Lcy09g003910 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g003910
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription factor protein
Location	Chr09: 3445940 .. 3448603 (+)
RNA-Seq Expression	Lcy09g003910
Synteny	Lcy09g003910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGTTTCCAACTGAAACTGCCTCTCTTCTTCTTCTCTCTTTCTCTTTCTCTTTCTCTACTTTCCACTAGCACTTTCCCTTCAGCTTCCACTTTTTGGTTTTTGTTGCCTTTTAAAAACCCTTCCACTCTCTCTTAGCCACAACCACCACCTGCACAGAACTCTGCATAAACTTAACATTAAGAACATGTCTAGCAGAAGATCAAGGCAGTCAGGCGCTTCCAGAATCAGTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTACCTGTCAAAATTTCTAATACTCTTGTAGTACCTACTCCGTTCATCCAGTAAAATTTCCAATTTTTTTTTTCTCTTCTCTCCCATGTCTTAGAAGCAGCACATTTTAAGTTCTTAACCTAGCTTTAATCGTAGTGAAACCCAAAATCTACATTTTGGGATGGTTGAAAAAAAATAGACTTGACCCGGATATCAAGGGAAAACTAACCAAGTTTAATTTAATTTTTTTTTTTAATTTTGAAAAAGAAAAGTCTTTATGTTGCTTTAAGCTAAAGATTCTCATTGTCTTGATGGGGGGTTCACATTGACTCTATTATACACTTAATTCATGCCACCGATTGGAAATGTACGGTCCAAAGAAACTCCATTGGTCTAGTCAATTAAAGAATTTAACAATTACATTAGCTAAGTAAAGTAATTGAATTTTTTTGTTTAATTTTAATTGGGTGTACCACAAACATGATTAAATCAAACCCACTTGATTAAAAATGGGCAAAACAAACAATGCAAAAGTACAACCAAGTGTTTGCTTTTTGTTTAATTTCAGATTTGACTTTATTATTAATGTTTTTAGGCTAAATTATACAAAAATACCCCTAAACTACTTTAAGGTAGGTTTCAATAATGTCCCTAAACTTTCAAAAGTTCTTACTTTTACAATTGAACTTTAAACTTGTTTCAAAACTGTCATTCCGTCAAATTTTCTAGTTAAATGAAGATAGAAAAGTGATGTGGTAACTTGTAAAATAGTGGTATATGTGACCAAGGAAGCAAGTTTCAATTATACCTTTAGCATTTCAAATTTCTCCTTTAAATCCTTAACCATTGAAATTGTTTCAAAAAAACCATTTCATTAGCTTCCTCGCTTAAAATGACGATAGAAATATGACGTGGTGGTAAACTATAATTTAAAAGAAAAACGGAAACAAACTTTTTAAAGGAGTAGGTAGACCACAAAGGATGAATGAAATTTGAAACCTCTATCTCACGTTCAGCTGTCGAAAATTAATGTTAAAGCATAAATGGAGAAGAGAAAGAGACTACAAAGAGAATAATGGAAACTTGGTACCATTTTTTTCTCAATAGAACTTCTTACATCTGAGGATGAAAATTATCAATCTCTATTTTTGTTATTCTCCTGACTTTCACAAACCAACTCTTTGAATTGATGTCACTCTTCCATAATTTTTCTCTCAAAAACATATATATTTATATCATGAAGTTTCTCTTTTTCGATTTTCTAGTGTTTCATTTTTCATTGTCAAAAGAGATGGTTGATTTTTACTCATGCATGACTTTTCTTATCATAGGTAGCTTCTATTAGATTACATGGGCTTCCATCTCAAAACCAATTGGCCATGAGTGGGGTGAATCTTCAACAGGGTCGGATCCCAATTTTTTTATTTTTTATTTTTTATTTTTTGACAATATGTGGGGTGGAGGGATTCGAACCACAAACTTTTTGGTTATCAGTACAACTTTATGCCAGTTGAGCTATGCTCTTGTTGGCAATTGGTTTTGAGATGGAAGCCCATGTAATTTAATATGGTATCAGAGCCCATGAAACCCAAACGGGTATTCGGTCCATAAAAAAAAAAAAAAAATCCGATACAAGAATGGTGAACCCAAAGAGACACCATCTTGAAGGGGCATGTTGAGGATCCCACATTGAAAAGATAAGAGGAGAACTCACAATATATAAGATACATGAGTTACTTCACTCATTGCCAATTGGTTTTGAGATGGAAGCCCATGTTATCTAATAGCTTCTCCCACAATTTCAACCAAAACTTAATTTTCTAAAATAAAATTGCTTCCCCCTCTGATTGAGACCATTCTGTTTTTAGTTTAAGTAAACTAATTATTGGGTTTGTTTTGTTTTTGCTTTTCAGGTATCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCACAGGGAGGTTGATGACCTAAGTGAGAGACTCTCTCAGCTGCTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGGAAGAAGGAGAACAAGGCTGTTGGTTTGATAATGATATATATATTTTAATATAATAATATAATATAATATATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTTTTTTATATTCCCTTTTCTAGGTTTTTGGTCGCTTAGATCAAAAAAAGGGAAATTTAAAAAAATGGGTGTATTTTTCCATGAAAAGAGAAACGTCCCTTTATTATTTATATAAAGCTATATAAATACACCCAAAAAATGTACCATCTCTTCTCGCTTTTATTTGAGAGAAATGAATATCAAATTAGCTTTTGAATC

mRNA sequence

ACTAGTTTCCAACTGAAACTGCCTCTCTTCTTCTTCTCTCTTTCTCTTTCTCTTTCTCTACTTTCCACTAGCACTTTCCCTTCAGCTTCCACTTTTTGGTTTTTGTTGCCTTTTAAAAACCCTTCCACTCTCTCTTAGCCACAACCACCACCTGCACAGAACTCTGCATAAACTTAACATTAAGAACATGTCTAGCAGAAGATCAAGGCAGTCAGGCGCTTCCAGAATCAGTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTATCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCACAGGGAGGTTGATGACCTAAGTGAGAGACTCTCTCAGCTGCTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGGAAGAAGGAGAACAAGGCTGTTGGTTTGATAATGATATATATATTTTAATATAATAATATAATATAATATATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTTTTTTATATTCCCTTTTCTAGGTTTTTGGTCGCTTAGATCAAAAAAAGGGAAATTTAAAAAAATGGGTGTATTTTTCCATGAAAAGAGAAACGTCCCTTTATTATTTATATAAAGCTATATAAATACACCCAAAAAATGTACCATCTCTTCTCGCTTTTATTTGAGAGAAATGAATATCAAATTAGCTTTTGAATC

Coding sequence (CDS)

ATGTCTAGCAGAAGATCAAGGCAGTCAGGCGCTTCCAGAATCAGTGATGACCAAATCATTGAACTCGTCTCCAAGCTTCGCCAACTCGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTATCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTGCACAGGGAGGTTGATGACCTAAGTGAGAGACTCTCTCAGCTGCTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

Protein sequence

MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

Homology

[Close]

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSR---RSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNL 60
          MSSR   RSRQSG+SRISDDQI +LVSKL+ L+PE+R RRSDKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-29
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSRRSRQ-SGASRISDDQIIELVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S ASRISDDQ+I+LVSKLRQ +PEI   RRSDKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-28
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSSRRSRQ-SGASRISDDQIIELVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S A RISD+Q+I+LVSKLRQ++PEI + RRSDK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-26
Identity = 65/92 (70.65%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSSR--RSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLH 60
          MSSR  RSRQSG+SRI+D+QI +LVSKL+ L+PE R R +D+V +S+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-26
Identity = 65/92 (70.65%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSSR--RSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLH 60
          MSSR  RSRQSG+SRI+D+QI +LVSKL+ L+PE R R +D+V +S+VLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          +EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.5e-38
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSG SRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS ASRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS ASRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS ASRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL
Match: A0A6J1GKQ6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
           +S+RRSRQ GASRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 60  ISTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 119

Query: 61  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
           VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 120 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 150

[Close]

BLAST of Lcy09g003910 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQSG SRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSGGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS ASRISDDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MS+RRSRQ GASRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. NCBI nr
Match: KAG7033162.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
           MS+RRSRQ GASRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHRE
Sbjct: 39  MSTRRSRQPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 98

Query: 61  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
           VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 99  VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 129

[Close]

BLAST of Lcy09g003910 vs. NCBI nr
Match: XP_038890645.1 (LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 2.8e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHRE 60
          MSSRRSRQS ASRI+DDQIIELVSKLRQLVPEIRHRR DKVSASKVLQETCNYIRNLHRE
Sbjct: 1  MSSRRSRQSSASRITDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHRE 60

Query: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 61 VDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of Lcy09g003910 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 7.7e-32
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSR---RSRQSGASRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNL 60
          MSSR   RSRQSG+SRISDDQI +LVSKL+ L+PE+R RRSDKVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          HREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy09g003910 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 72/92 (78.26%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MSSRRSRQ-SGASRISDDQIIELVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S ASRISDDQ+I+LVSKLRQ +PEI   RRSDKVSASKVLQETCNYIR LH
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLH 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LS+RLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-29
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSSRRSRQ-SGASRISDDQIIELVSKLRQLVPEI-RHRRSDKVSASKVLQETCNYIRNLH 60
          MS+RRSRQ S A RISD+Q+I+LVSKLRQ++PEI + RRSDK SASKVLQETCNYIRNL+
Sbjct: 1  MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN 60

Query: 61 REVDDLSERLSQLLSTIDADSAEAAIIRSLIM 91
          REVD+LSERLSQLL ++D DS EAA+IRSL+M
Sbjct: 61 REVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lcy09g003910 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-27
Identity = 66/90 (73.33%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 2  SSRRSRQ-SGASRISDDQIIELVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRNLHR 61
          SSRRSRQ S +SRISDDQI +L+SKLRQ +PEIR +RRS+ VSASKVLQETCNYIRNL++
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 62 EVDDLSERLSQLLSTIDADSAEAAIIRSLI 90
          E DDLS+RL+QLL +ID +S +AA+IRSLI
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Lcy09g003910 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-26
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MSSRRSR---QSGASRISDDQIIELVSKLRQLVPEIR-HRRSDKVSASKVLQETCNYIRN 60
          MS RRSR    SG SRIS+DQI +L+ KL+QL+PE+R  RRSDKVSA++VLQ+TCNYIRN
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ 92
          LHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Sbjct: 61 LHREVDDLSERLSELLA--NSDTAQAALIRSLLTQ 93

The following BLAST results are available for this feature:

BLAST of Lcy09g003910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.1e-30	79.35	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LJX1	3.5e-29	78.26	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	3.9e-28	76.09	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
B8APB5	2.8e-26	70.65	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	2.8e-26	70.65	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]

BLAST of Lcy09g003910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BY51	9.5e-38	98.90	transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV...	[more]
A0A5A7T970	1.4e-36	96.70	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	1.4e-36	96.70	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	1.4e-36	96.70	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]
A0A6J1GKQ6	4.0e-36	94.51	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=...	[more]

BLAST of Lcy09g003910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134204.1	2.0e-37	98.90	transcription factor PRE6 [Momordica charantia]	[more]
XP_004151201.2	2.8e-36	96.70	transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcrip...	[more]
XP_023548992.1	2.8e-36	95.60	transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transc...	[more]
KAG7033162.1	2.8e-36	95.60	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038890645.1	2.8e-36	96.70	LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]	[more]

BLAST of Lcy09g003910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	7.7e-32	79.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	2.5e-30	78.26	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.7e-29	76.09	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	5.7e-27	73.33	BANQUO 2	[more]
AT1G74500.1	8.3e-26	68.42	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	PANTHER	PTHR46446:SF28	TRANSCRIPTION REGULATOR	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 8..74 e-value: 2.82399E-21 score: 77.3435
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..58 e-value: 6.9E-5 score: 22.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 3..57 score: 10.658005
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 2..86 e-value: 5.5E-9 score: 37.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 17..76
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g003910.1	Lcy09g003910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity