Lcy08g019070 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g019070
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Growth-regulating factor
Location	Chr08: 49742230 .. 49742652 (-)
RNA-Seq Expression	Lcy08g019070
Synteny	Lcy08g019070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGTGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCACAATGAAAGCTGA

mRNA sequence

ATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGTGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCACAATGAAAGCTGA

Coding sequence (CDS)

ATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATTCCTGGCAGCTAACTCCTCTGACAATGAGCTGCTCTTCCTCATCCTCCAGACACAAGAACTGCTCTGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTTCAGAGCTTTGGCGATTCCCCTAAGCAACTCAAGCAAGAGGACCATTACTACGTGCTGGGAAAATACAATGAGATGCAGAGTAAGATGGAAAGAGATGAACCACAGAAGACTATGCATCACTTCTTTGATGAATGGTCTCCAAAAGACAGAGAATCGTGGCTTGATTTGGATGATAAGTCATCGAATACTGGCTCAGTTTCTGCAACTCGGCTTTCAATGTCTATTCCTAACTCATCACAACATGACTTCTCCTCCATCTTCAGTTCCAACAAGCACAATGAAAGCTGA

Protein sequence

MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDHYYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSIPNSSQHDFSSIFSSNKHNES

Homology

[Close]

BLAST of Lcy08g019070 vs. ExPASy TrEMBL
Match: A0A6J1KAB2 (Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111493661 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.0e-62
Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 232 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 291

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKMER++P+KTMHHFF EWSPKDRESW+DLDDKSSNTGSVS TRLSMSI
Sbjct: 292 YYAVGKYNEMQSKMEREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSI 351

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIFSSNKHNE+
Sbjct: 352 LNSSQHDFSSIFSSNKHNEN 371

[Close]

BLAST of Lcy08g019070 vs. ExPASy TrEMBL
Match: A0A6J1G4J3 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111450713 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 122/140 (87.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 233 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 292

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTGSVS TRLSMSI
Sbjct: 293 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSI 352

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIF SNKHNE+
Sbjct: 353 LNSSQHDFSSIFGSNKHNEN 372

[Close]

BLAST of Lcy08g019070 vs. ExPASy TrEMBL
Match: A0A6J1G4G2 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111450713 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 122/140 (87.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 260 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 319

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTGSVS TRLSMSI
Sbjct: 320 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSI 379

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIF SNKHNE+
Sbjct: 380 LNSSQHDFSSIFGSNKHNEN 399

[Close]

BLAST of Lcy08g019070 vs. ExPASy TrEMBL
Match: A0A6J1DPG3 (Growth-regulating factor OS=Momordica charantia OX=3673 GN=LOC111021882 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58
Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASS+EDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQE+H
Sbjct: 236 MRGFSASSLEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEH 295

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY      EMQ+KM R+EPQK MHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI
Sbjct: 296 YY------EMQNKMGREEPQKIMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 355

Query: 121 PNSS-QHDFSSIFSSNKHNES 141
            N+S QHDFSSIF+SNKHNE+
Sbjct: 356 SNNSLQHDFSSIFNSNKHNEN 370

[Close]

BLAST of Lcy08g019070 vs. ExPASy TrEMBL
Match: A0A6J1DMB1 (Growth-regulating factor OS=Momordica charantia OX=3673 GN=LOC111021882 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.6e-58
Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASS+EDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQE+H
Sbjct: 233 MRGFSASSLEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEEH 292

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY      EMQ+KM R+EPQK MHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI
Sbjct: 293 YY------EMQNKMGREEPQKIMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 352

Query: 121 PNSS-QHDFSSIFSSNKHNES 141
            N+S QHDFSSIF+SNKHNE+
Sbjct: 353 SNNSLQHDFSSIFNSNKHNEN 367

[Close]

BLAST of Lcy08g019070 vs. NCBI nr
Match: XP_022999222.1 (growth-regulating factor 5-like [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 232 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 291

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKMER++P+KTMHHFF EWSPKDRESW+DLDDKSSNTGSVS TRLSMSI
Sbjct: 292 YYAVGKYNEMQSKMEREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSI 351

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIFSSNKHNE+
Sbjct: 352 LNSSQHDFSSIFSSNKHNEN 371

[Close]

BLAST of Lcy08g019070 vs. NCBI nr
Match: XP_023546923.1 (growth-regulating factor 1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 122/140 (87.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 233 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 292

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTG+VS TRLSMSI
Sbjct: 293 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGAVSETRLSMSI 352

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIFSSNKHNE+
Sbjct: 353 LNSSQHDFSSIFSSNKHNEN 372

[Close]

BLAST of Lcy08g019070 vs. NCBI nr
Match: XP_023546920.1 (growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 122/140 (87.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 260 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 319

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTG+VS TRLSMSI
Sbjct: 320 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGAVSETRLSMSI 379

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIFSSNKHNE+
Sbjct: 380 LNSSQHDFSSIFSSNKHNEN 399

[Close]

BLAST of Lcy08g019070 vs. NCBI nr
Match: XP_023546921.1 (growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023546922.1 growth-regulating factor 5-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 122/140 (87.14%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 259 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 318

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTG+VS TRLSMSI
Sbjct: 319 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGAVSETRLSMSI 378

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIFSSNKHNE+
Sbjct: 379 LNSSQHDFSSIFSSNKHNEN 398

[Close]

BLAST of Lcy08g019070 vs. NCBI nr
Match: XP_022946732.1 (growth-regulating factor 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 6.7e-61
Identity = 122/140 (87.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MRGFSASSMEDSWQLTPLTMSCSSSSSRHKNCSALQGDYSSYLQLQSFGDSPKQLKQEDH 60
           MRGFSASSMED WQLTPLTMSCSSSS RHKNCSALQGDYSSYLQLQSFG SPKQ+KQ++H
Sbjct: 233 MRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEH 292

Query: 61  YYVLGKYNEMQSKMERDEPQKTMHHFFDEWSPKDRESWLDLDDKSSNTGSVSATRLSMSI 120
           YY +GKYNEMQSKM+R++P+KTMHHFF EWSPKDRESW+DLDDKSSNTGSVS TRLSMSI
Sbjct: 293 YYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSI 352

Query: 121 PNSSQHDFSSIFSSNKHNES 141
            NSSQHDFSSIF SNKHNE+
Sbjct: 353 LNSSQHDFSSIFGSNKHNEN 372

The following BLAST results are available for this feature:

BLAST of Lcy08g019070 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g019070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAB2	5.0e-62	88.57	Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111493661 PE=3 SV=1	[more]
A0A6J1G4J3	3.2e-61	87.14	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111450713 PE=3 SV=1	[more]
A0A6J1G4G2	3.2e-61	87.14	Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111450713 PE=3 SV=1	[more]
A0A6J1DPG3	2.6e-58	87.94	Growth-regulating factor OS=Momordica charantia OX=3673 GN=LOC111021882 PE=3 SV=...	[more]
A0A6J1DMB1	2.6e-58	87.94	Growth-regulating factor OS=Momordica charantia OX=3673 GN=LOC111021882 PE=3 SV=...	[more]

BLAST of Lcy08g019070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999222.1	1.0e-61	88.57	growth-regulating factor 5-like [Cucurbita maxima]	[more]
XP_023546923.1	5.1e-61	87.14	growth-regulating factor 1-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023546920.1	5.1e-61	87.14	growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023546921.1	5.1e-61	87.14	growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]
XP_022946732.1	6.7e-61	87.14	growth-regulating factor 5-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Lcy08g019070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..140
None	No IPR available	PANTHER	PTHR31602:SF46	GROWTH-REGULATING FACTOR 6	coord: 3..126
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0
IPR031137	Growth-regulating factor	PANTHER	PTHR31602	FAMILY NOT NAMED	coord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g019070.1	Lcy08g019070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding