Lcy08g019040 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g019040
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Elf4 domain-containing protein
Location	Chr08: 49723435 .. 49725681 (-)
RNA-Seq Expression	Lcy08g019040
Synteny	Lcy08g019040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGCTGAAATGGAAAATAATAAATCCGAAATAACAGGTGGATATTTGATTATAAAAATACAGCCCCAAAATGAAAATGAAAATGAAAATGAAAAATATATTGTATTATAATATTATTTAAAGTTTATTAGACACAGAGGGGTCCGACTCCAAGCGTGACTGTCAAATCTATATATTCTCTCTCTCCTTTTAATTTTTATTTTTTGTTCTTTATCTCTCTCTCTTTAGATTTCTCAGAAATTACAGAAGAGGTGTCTGTTCCGGAGATTCGATTCAATCGCCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTTCTTCCTCAATATAATGTTCCAGATTTTCAAGGTAATTTTTACCCCATTTTCTTTATTTTCATTCATACCTTTCGTCACTTTTTTTTTTTTCTTTTCTTTTGGAACATAACATATCATGGTACTACAAAATTTATAATAATTACATAATCAAAAAACAAAAAAAAGACGACTTTTTCCCAGGCCATCTCCTTGTTTTTCCAGTGGGAGTTTCTCTTTTTGTTGATGGCTTCGTGGGGCTCTTTTTCTTTCTTACAGAACATTGATTCTATCTGCGTCCTCAATGGTTGTTTCTAGACTTCTCCAGTTTTTTTTTTTTTTTTTTGTCTTTCTGTAATTAAATCTTAAAAAAGAAAAAAAAAAAAAACTGTGGCTGTGTGTTTTTGTTTTTAATTTAGTTTAGTTGTATTAAGATCTTCTCCTCTCCTCTCCTCTCCTCAAGAGTTATTGATGGGTTTTTCTTTTTTCCTTTAAAAAAAAGGAAAAAAATAATAATTTTGCTGTTCCCATGTAGCTGCAGTTATTAAATCTTCTTCCCCACTTAGTCCTTTACTATTCTGAAAAGAATTTCAGATTGTTCTTTGATTTCTTCTGTTTTGTCCGAATTTGAATTAATATGCTTTTGGTTTTAAATAGTATTGTATATCTCTTACAAATTTGAAAATCCCCTTTATTGGAAATATAGAAAATAGATCAATAATGGTGTGTGGGCTTAGCTTCTCTGCATCATTGACTGGTTTTTGAGTGTTTGAAGAGATTCTTCCTTGGAACTCTGAGCTCTAGGTGGCTATTCTCTCAGTACATTAAAAAAGTTCCCTTTTATGGAAATGGGAATGGGATCTGCTTTTTCTTTCTACATCTCATTATCAAATAATAATAAAAACAATTATTCTTTTTTAAAAAAACATTAATAATTTCTCTTGTTTGTCCTCTCATAATCCATGGAGATGGAGGTGATGATTTCTGCTACAGTTCTTGTCTCATGTGCAGAAACGCCTTTTCTTTTTTCTCTTTTTTATATTAAAGAAATCCCCTTTTTTCCATTTTTTTTTTTCTTTTTGGGGCTCATGTTAGTGAAAGCTTGTACAGATAAGAAGATATGATTATGGTTCGTTCTTTAAAAACAGATGTTAAATTAAACTATGCAAATTTTAATTTGTAACTAACCCATCCCAGCTTTTGTTCTGTTTTTTTCTTCTTTGGGGGGCACAAATTACCAACAAATATTTTTTTAAAAAAAAATTGACTTGATATGTAGCAGGATTGGGAGTGATTTTGAGAAGAAAAAGAATAAAGAAGAGAGGGGGAAATGGAGGGGGAGACATTCTCATCAGGAGGAGTTGGAAATGGAAGCCAAATTGATGGGAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAACCACGAGTCCAAAATGCCCGACAATCTCAGCAGAAACGTCGGTCTGATTCGCGAGCTCAACAACAACATCAGAAGGGTTGTTGATCTCTACGCCGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCCTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGTCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAGCCATAATAAAATACTACATACCCCCTTCTCTCCCTCTCTTCATTCTTTGCCTTGAACAATAATTTCCCCCAGGTTCTCTGTTGCAGTGTAGTAGCCCCCTTTTGGATCTAATTCAAAAACCAAAATTAAGCATATATTTGAATTTCATGTCATATGGAAATGGCTAGTTTAGATTTTTTTTTTTTTTTTTTTTTTTCATGTCAGTCAGCTGATCTGTTTTTTGTTTTTTTGTTTGTCCATTCCTTTTAAAAATTGATTTGTCTGTTG

mRNA sequence

AGCAGCTGAAATGGAAAATAATAAATCCGAAATAACAGATTTCTCAGAAATTACAGAAGAGGTGTCTGTTCCGGAGATTCGATTCAATCGCCGATCTTTTTCCACTGCTCCTCGGGAATCAGACTCTTTCTTCCTCAATATAATGTTCCAGATTTTCAAGGATTGGGAGTGATTTTGAGAAGAAAAAGAATAAAGAAGAGAGGGGGAAATGGAGGGGGAGACATTCTCATCAGGAGGAGTTGGAAATGGAAGCCAAATTGATGGGAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAACCACGAGTCCAAAATGCCCGACAATCTCAGCAGAAACGTCGGTCTGATTCGCGAGCTCAACAACAACATCAGAAGGGTTGTTGATCTCTACGCCGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCCTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGTCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAGCCATAATAAAATACTACATACCCCCTTCTCTCCCTCTCTTCATTCTTTGCCTTGAACAATAATTTCCCCCAGGTTCTCTGTTGCAGTGTAGTAGCCCCCTTTTGGATCTAATTCAAAAACCAAAATTAAGCATATATTTGAATTTCATGTCATATGGAAATGGCTAGTTTAGATTTTTTTTTTTTTTTTTTTTTTTCATGTCAGTCAGCTGATCTGTTTTTTGTTTTTTTGTTTGTCCATTCCTTTTAAAAATTGATTTGTCTGTTG

Coding sequence (CDS)

ATGGAGGGGGAGACATTCTCATCAGGAGGAGTTGGAAATGGAAGCCAAATTGATGGGAAAATGCTGCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGACCAAAACAGATTGCTGATCAATGAAATTAACCAAAACCACGAGTCCAAAATGCCCGACAATCTCAGCAGAAACGTCGGTCTGATTCGCGAGCTCAACAACAACATCAGAAGGGTTGTTGATCTCTACGCCGATCTCTCCACTTCCTTCACCAAATCCATGGAGGCTTCCTCGGAAGGAGACTCCGCCGCCGCCATCAGACCCGACGTCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAG

Protein sequence

MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRPPP

Homology

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BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-34
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S   +G+G Q+DGK+LQTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNN+RRV  LY DLS +F+KSMEASSEGDS+         G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG------RGNRRIRP 108

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BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.1e-33
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+  S  G G+   +DGK+LQ+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

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BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-31
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+ +S  G G   Q+DGK+LQ FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKR 113
           NVGLIRELNNNIR V  LY DLS SF +S++ASSEG+S   ++ D K  +++
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQK 114

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BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-16
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYADLSTSFTKSMEASSEG 97
           +Y+DL+TSF+        G
Sbjct: 82  MYSDLNTSFSSGFHGGKNG 100

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BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-13
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D ++  T    F + Q  LDQNR LI  +N+NH S++PDN+SRNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 78  LYADLSTSFTKSME----ASSEGDS 99
           +Y+DLS +F K  +     + +GD+
Sbjct: 94  IYSDLSLNFAKKFDQRRRTTKDGDT 118

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BLAST of Lcy08g019040 vs. ExPASy TrEMBL
Match: A0A2C9W4E0 (Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G038900 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.5e-46
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SFTKSMEASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFTKSMEASSEGDSSGALKSDAKAGHKRNRP 113

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BLAST of Lcy08g019040 vs. ExPASy TrEMBL
Match: A0A251JFU2 (Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G097100 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.3e-46
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GIGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SF+KSMEASSEGDS+ A+R D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFSKSMEASSEGDSSGALRSDGKAGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. ExPASy TrEMBL
Match: B9MSX7 (Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G143800 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

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BLAST of Lcy08g019040 vs. ExPASy TrEMBL
Match: A0A6M2ESE4 (Elf4 domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. ExPASy TrEMBL
Match: A0A4U5QTY9 (Elf4 domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000053300 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. NCBI nr
Match: XP_021606568.1 (protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021606569.1 protein ELF4-LIKE 3-like [Manihot esculenta] >KAG8657102.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta] >KAG8657103.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta] >OAY53981.1 hypothetical protein MANES_03G038900v8 [Manihot esculenta])

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SFTKSMEASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFTKSMEASSEGDSSGALKSDAKAGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. NCBI nr
Match: XP_021596442.1 (protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596443.1 protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596444.1 protein ELF4-LIKE 3-like [Manihot esculenta] >KAG8636079.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta] >OAY27068.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta] >OAY27069.1 hypothetical protein MANES_16G097100v8 [Manihot esculenta])

HSP 1 Score: 192.6 bits (488), Expect = 1.9e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GIGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLS+SF+KSMEASSEGDS+ A+R D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSSSFSKSMEASSEGDSSGALRSDGKAGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. NCBI nr
Match: XP_006381644.1 (protein ELF4-LIKE 3 [Populus trichocarpa] >XP_011045972.1 PREDICTED: protein ELF4-LIKE 3 [Populus euphratica] >XP_024458736.1 protein ELF4-LIKE 3 [Populus trichocarpa] >XP_034913477.1 protein ELF4-LIKE 3 [Populus alba] >XP_034913478.1 protein ELF4-LIKE 3 [Populus alba] >KAF9851294.1 hypothetical protein H0E87_015477 [Populus deltoides] >KAG6769926.1 hypothetical protein POTOM_025593 [Populus tomentosa] >KAG6772021.1 hypothetical protein POTOM_023417 [Populus tomentosa] >PNT31684.1 hypothetical protein POPTR_006G143800 [Populus trichocarpa] >PNT31685.1 hypothetical protein POPTR_006G143800 [Populus trichocarpa])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+TFS  G+GNG+QIDGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 1   MEGDTFS--GLGNGTQIDGKILQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLYADLSTSFTKSM+ASSEGDS+ A++ D K GHKRNRP
Sbjct: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMDASSEGDSSGALKSDGKGGHKRNRP 113

[Close]

BLAST of Lcy08g019040 vs. NCBI nr
Match: XP_022946747.1 (protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022999232.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999233.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999234.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >XP_022999235.1 protein ELF4-LIKE 3-like [Cucurbita maxima] >KAG7030507.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-45
Identity = 102/117 (87.18%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEGET SSGG+GNG Q+DGKM QTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNL+R
Sbjct: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRPPP 118
           NVGLIRELNNNIRRVVDLYA LS SFTKSMEASSEG+SAA      KPGHKRNRPPP
Sbjct: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAA------KPGHKRNRPPP 111

[Close]

BLAST of Lcy08g019040 vs. NCBI nr
Match: KAA8534789.1 (hypothetical protein F0562_029769 [Nyssa sinensis])

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 99/115 (86.09%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEGETFS  G+GNG+Q+DGK+LQTFQKNFVQVQNILDQNRLLINEINQNHESK+PDNLSR
Sbjct: 8   MEGETFS--GLGNGTQLDGKVLQTFQKNFVQVQNILDQNRLLINEINQNHESKIPDNLSR 67

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNNIRRVVDLY DLS+SFTKSMEASSEGDS+ A++ D K GHKRNRP
Sbjct: 68  NVGLIRELNNNIRRVVDLYGDLSSSFTKSMEASSEGDSSGALKSDGKAGHKRNRP 120

[Close]

BLAST of Lcy08g019040 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-35
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+T S   +G+G Q+DGK+LQTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNRP 116
           NVGLIRELNNN+RRV  LY DLS +F+KSMEASSEGDS+         G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEG------RGNRRIRP 108

[Close]

BLAST of Lcy08g019040 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+  S  G G+   +DGK+LQ+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

[Close]

BLAST of Lcy08g019040 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-34
Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+  S  G G+   +DGK+LQ+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKRNR 115
           NVGLI+ELNNNIRRV  LY DLS SF +S++ASSEG+S+  ++ D K   KR R
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFR 112

[Close]

BLAST of Lcy08g019040 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-32
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MEGETFSSGGVGNGSQIDGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSR 60
           MEG+ +S  G G   Q+DGK+LQ FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYADLSTSFTKSMEASSEGDSAAAIRPDVKPGHKR 113
           NVGLIRELNNNIR V  LY DLS SF +S++ASSEG+S   ++ D K  +++
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQK 114

[Close]

BLAST of Lcy08g019040 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 84.7 bits (208), Expect = 5.3e-17
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 18  DGKMLQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLSRNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+S+NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYADLSTSFTKSMEASSEG 97
           +Y+DL+TSF+        G
Sbjct: 82  MYSDLNTSFSSGFHGGKNG 100

The following BLAST results are available for this feature:

BLAST of Lcy08g019040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8F5	2.7e-34	69.57	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	5.1e-33	65.79	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	2.2e-31	64.29	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
O04211	7.4e-16	49.37	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	5.9e-13	44.71	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]

BLAST of Lcy08g019040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2C9W4E0	5.5e-46	86.96	Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G038900 P...	[more]
A0A251JFU2	9.3e-46	86.96	Elf4 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G097100 P...	[more]
B9MSX7	1.2e-45	86.96	Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G14380...	[more]
A0A6M2ESE4	1.2e-45	86.96	Elf4 domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1	[more]
A0A4U5QTY9	1.2e-45	86.96	Elf4 domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000053300 PE=3...	[more]

BLAST of Lcy08g019040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021606568.1	1.1e-45	86.96	protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021606569.1 protein ELF4-LIKE 3...	[more]
XP_021596442.1	1.9e-45	86.96	protein ELF4-LIKE 3-like [Manihot esculenta] >XP_021596443.1 protein ELF4-LIKE 3...	[more]
XP_006381644.1	2.5e-45	86.96	protein ELF4-LIKE 3 [Populus trichocarpa] >XP_011045972.1 PREDICTED: protein ELF...	[more]
XP_022946747.1	3.3e-45	87.18	protein ELF4-LIKE 3-like [Cucurbita moschata] >XP_022946748.1 protein ELF4-LIKE ...	[more]
KAA8534789.1	5.6e-45	86.09	hypothetical protein F0562_029769 [Nyssa sinensis]	[more]

BLAST of Lcy08g019040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06255.1	1.9e-35	69.57	ELF4-like 3	[more]
AT1G17455.1	3.6e-34	65.79	ELF4-like 4	[more]
AT1G17455.2	3.6e-34	65.79	ELF4-like 4	[more]
AT1G72630.1	1.5e-32	64.29	ELF4-like 2	[more]
AT2G40080.1	5.3e-17	49.37	Protein of unknown function (DUF1313)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 16..97 e-value: 4.0E-41 score: 138.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..117
None	No IPR available	PANTHER	PTHR33469:SF16	PROTEIN ELF4-LIKE 3	coord: 1..115
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g019040.1	Lcy08g019040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005634	nucleus