Lcy08g016940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g016940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr08: 47614396 .. 47615007 (-)
RNA-Seq Expression	Lcy08g016940
Synteny	Lcy08g016940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGCATCGCCGGCTGCGACTCCGAGATCCACCGCCGCCCCTACCATCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCCGCCCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTCGCCTCCGCTTCCTCTTCCCCTTCCTCCTCTCCTGTCGTCGGTAAGTCCTCTCAGCCTGGTGCCGCTTTGAGCGACGACGATGACGATGACGCTACTACTCAGTTTGCCAGGAATTGAATTTCAATACGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTATTTTTATTTTTCATTTTCTTTCATGTTTTCGACAATTTTCCTGCCTTAGATGTTGAATAATTGGGAACCAGATGAGATGAGATTTATAATTGTGATTTTCTTTTCTTTTTTAAGTTTCTGTGATCTGAAAAACATTGTTGGATCCGTTCGTGTTCTGAGTCGTGTTGCTTACTACTCGCCGTCAAATAGATGGCGAGGATTGAAAATCGGTCTTCTCTGTGTTGGTGATTAA

mRNA sequence

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGCATCGCCGGCTGCGACTCCGAGATCCACCGCCGCCCCTACCATCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCCGCCCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTCGCCTCCGCTTCCTCTTCCCCTTCCTCCTCTCCTGTCGTCGGTAAGTCCTCTCAGCCTGGTGCCGCTTTGAGCGACGACGATGACGATGACGCTACTACTCATTTCTGTGATCTGAAAAACATTGTTGGATCCGTTCGTGTTCTGAGTCGTGTTGCTTACTACTCGCCGTCAAATAGATGGCGAGGATTGAAAATCGGTCTTCTCTGTGTTGGTGATTAA

Coding sequence (CDS)

ATGGCCGCCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGCATCGCCGGCTGCGACTCCGAGATCCACCGCCGCCCCTACCATCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCCGCCCACTGCTCCCATTCCAAGTCCAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGCTGCTTGACGCTCGTCCTCGCCTCCGCTTCCTCTTCCCCTTCCTCCTCTCCTGTCGTCGGTAAGTCCTCTCAGCCTGGTGCCGCTTTGAGCGACGACGATGACGATGACGCTACTACTCATTTCTGTGATCTGAAAAACATTGTTGGATCCGTTCGTGTTCTGAGTCGTGTTGCTTACTACTCGCCGTCAAATAGATGGCGAGGATTGAAAATCGGTCTTCTCTGTGTTGGTGATTAA

Protein sequence

MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRRSWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHFCDLKNIVGSVRVLSRVAYYSPSNRWRGLKIGLLCVGD

Homology

[Close]

BLAST of Lcy08g016940 vs. ExPASy TrEMBL
Match: A0A1S4E0F4 (uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.8e-44
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQP  HCSHSKSKS+SYPIRR
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQP-PHCSHSKSKSISYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCL+L LASASSSPS+SPVVGK+SQPGAALS+DDDDDA   F
Sbjct: 61  SWSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILF 105

[Close]

BLAST of Lcy08g016940 vs. ExPASy TrEMBL
Match: A0A6J1FII0 (uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC111444438 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ S HC HSK KSVSYPIRR
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLS-HCYHSKYKSVSYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCLTL  AS SSSPSSSPVVGKSSQPGAALSDDDDDDA   F
Sbjct: 61  SWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQF 105

[Close]

BLAST of Lcy08g016940 vs. ExPASy TrEMBL
Match: A0A0A0LI78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-42
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRP+YEACI GCDSEIHRRPYHRNCGCALHKS RQP  HCSHSKSKS+SYPIRR
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQP-PHCSHSKSKSISYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCL+LVLASASSSPSSSPVVGK+SQPGA LS+DDDDD+   F
Sbjct: 61  SWSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILF 104

[Close]

BLAST of Lcy08g016940 vs. ExPASy TrEMBL
Match: A0A6J1KE46 (uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.7e-42
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ S  CSHSKSKS+ YPIRR
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQ-SPRCSHSKSKSIFYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDA 103
           SWSEGCL L LASASSSPSSSPVVGK+SQPG ALSDDDDDDA
Sbjct: 61  SWSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDA 101

[Close]

BLAST of Lcy08g016940 vs. ExPASy TrEMBL
Match: A0A6J1G546 (uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC111450804 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ S  CSHSKSKS+ YPIRR
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQ-SPRCSHSKSKSIFYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDD 101
           SWSEGCL L LASASSSPSSSPV+GK+SQPG ALSDDDDD
Sbjct: 61  SWSEGCLALALASASSSPSSSPVIGKTSQPGVALSDDDDD 99

[Close]

BLAST of Lcy08g016940 vs. NCBI nr
Match: XP_038889376.1 (uncharacterized protein LOC120079294 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQP  HCSHSKSKS+SYPIRR
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQP-PHCSHSKSKSISYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCLTLVLASASSSPSSSPVVGK+SQPGAALSDDDDDD    F
Sbjct: 61  SWSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILF 105

[Close]

BLAST of Lcy08g016940 vs. NCBI nr
Match: XP_016901708.1 (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 5.8e-44
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADGLLRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQP  HCSHSKSKS+SYPIRR
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQP-PHCSHSKSKSISYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCL+L LASASSSPS+SPVVGK+SQPGAALS+DDDDDA   F
Sbjct: 61  SWSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILF 105

[Close]

BLAST of Lcy08g016940 vs. NCBI nr
Match: XP_022938303.1 (uncharacterized protein LOC111444438 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 3.8e-43
Identity = 94/106 (88.68%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ S HC HSK KSVSYPIRR
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLS-HCYHSKYKSVSYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCLTL  AS SSSPSSSPVVGKSSQPGAALSDDDDDDA   F
Sbjct: 61  SWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQF 105

[Close]

BLAST of Lcy08g016940 vs. NCBI nr
Match: KAG7021199.1 (hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-42
Identity = 93/106 (87.74%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ S HC HSK KSVSYPIRR
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLS-HCYHSKYKSVSYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATTHF 107
           SWSEGCLTL  AS SSSPSSSPVVGK SQPGAALSDDDDDDA   F
Sbjct: 61  SWSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQF 105

[Close]

BLAST of Lcy08g016940 vs. NCBI nr
Match: XP_023536961.1 (uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 5.4e-42
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSAHCSHSKSKSVSYPIRR 60
           MAADG+LRPVYEACIAGCDSE+HRRPYHRNCGCALH+SRRQ S HC HSK KSVSYPIRR
Sbjct: 1   MAADGVLRPVYEACIAGCDSEVHRRPYHRNCGCALHESRRQLS-HCYHSKYKSVSYPIRR 60

Query: 61  SWSEGCLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDD 102
           SWSEGCLTL  AS SSSPSSSPVVGKSSQPGAALSDDDDDD
Sbjct: 61  SWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD 100

[Close]

BLAST of Lcy08g016940 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 6.9e-19
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH---------KSRRQPSAHCSHSKS 60
           MAADG+ R ++E CI+G DS I RRPYH+NCGCALH         +++R+P +   H  S
Sbjct: 1   MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61  KSVSYPIRRSWSEG-CLTLVLASASSSPSSSPVVGKSSQPGAALSDDDDDDATT 105
           +S+S+PIRRSWSEG  + + L S+SSS S+   +  SS      SD   D+A T
Sbjct: 61  ESISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSLSNLASDLPVDNAAT 114

[Close]

BLAST of Lcy08g016940 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-17
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 4   DGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRR--QPSAHCSHSKSKSVSYPIRRS 63
           DG+ R ++E CI+ CDS I RRPYH+NCGCALH+  R    +  C H +S+ V +PI+RS
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 64  WSEG-CLTLVLASASSSP-----SSSPVVGKSSQPGAALSDDD 99
           WSEG  L L LAS+SSS      SSS  +   +   + +SD D
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

The following BLAST results are available for this feature:

BLAST of Lcy08g016940 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g016940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0F4	2.8e-44	88.68	uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=...	[more]
A0A6J1FII0	1.8e-43	88.68	uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A0A0LI78	2.0e-42	86.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1	[more]
A0A6J1KE46	7.7e-42	89.22	uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529...	[more]
A0A6J1G546	1.4e-40	88.00	uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC1114508...	[more]

BLAST of Lcy08g016940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889376.1	3.6e-46	92.45	uncharacterized protein LOC120079294 [Benincasa hispida]	[more]
XP_016901708.1	5.8e-44	88.68	PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo]	[more]
XP_022938303.1	3.8e-43	88.68	uncharacterized protein LOC111444438 [Cucurbita moschata]	[more]
KAG7021199.1	1.9e-42	87.74	hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023536961.1	5.4e-42	90.10	uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy08g016940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	6.9e-19	46.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	6.5e-17	47.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..92
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g016940.1	Lcy08g016940.1	mRNA