|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAAACATCGCCTTGTCGGAAGGAAGCATGAAGCATGAAGCCACTGTTGGGCCGTACGATGGATGTGTTGGCATTTGGCAACCCAATCGACGGCTCAGAGCCATCCAGCGTGGCAGAGCCGAGCCGAGCCCTGAGAGCGTCTCGGTTGCCGACAAGGAGTACATGGATCCACGTGGGATCACGAGGAGAGTGGGGACCACATGGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGCATTTTTTTTTTTGGCTTGTGTGTCCCCAGGTGGGGGTGCGTGTCTGCTTCACGGTTGA mRNA sequence ATGGAAAACATCGCCTTGTCGGAAGGAAGCATGAAGCATGAAGCCACTGTTGGGCCGTACGATGGATGTGTTGGCATTTGGCAACCCAATCGACGGCTCAGAGCCATCCAGCGTGGCAGAGCCGAGCCGAGCCCTGAGAGCGTCTCGGTTGCCGACAAGGAGTACATGGATCCACGTGGGATCACGAGGAGAGTGGGGACCACATGGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGCATTTTTTTTTTTGGCTTGTGTGTCCCCAGGTGGGGGTGCGTGTCTGCTTCACGGTTGA Coding sequence (CDS) ATGGAAAACATCGCCTTGTCGGAAGGAAGCATGAAGCATGAAGCCACTGTTGGGCCGTACGATGGATGTGTTGGCATTTGGCAACCCAATCGACGGCTCAGAGCCATCCAGCGTGGCAGAGCCGAGCCGAGCCCTGAGAGCGTCTCGGTTGCCGACAAGGAGTACATGGATCCACGTGGGATCACGAGGAGAGTGGGGACCACATGGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGCATTTTTTTTTTTGGCTTGTGTGTCCCCAGGTGGGGGTGCGTGTCTGCTTCACGGTTGA Protein sequence MENIALSEGSMKHEATVGPYDGCVGIWQPNRRLRAIQRGRAEPSPESVSVADKEYMDPRGITRRVGTTWKRTCQPPTSHPVDRRLRDLCTAFFFLACVSPGGGACLLHG
Homology
BLAST of Lcy08g016660 vs. ExPASy TrEMBL
Match: A0A0A0LJ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16 Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0
Query: 30 NRRLRAIQRGRAEPSPESVSVADKEYMDPRGITRRVGTTWKRTCQPPTSHPVDRRLRDL 89
N LR + RGR SVSVADKEYMDPRGITR VGTTWKRTCQPPTSHPVDRRLRDL
Sbjct: 4 NEGLRDVLRGR---EGWSVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59
BLAST of Lcy08g016660 vs. NCBI nr
Match: KAG6586336.1 (hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 106.3 bits (264), Expect = 1.7e-19 Identity = 67/118 (56.78%), Postives = 69/118 (58.47%), Query Frame = 0
Query: 1 MENIALSEGSM------------KHEATVGPYDGCVGIWQPNRRLRAIQRGRAEPSPESV 60
MENIALSEG+M K AT P WQ +R R R P
Sbjct: 1 MENIALSEGNMLSRTIDELALPTKSTATFLP------TWQ-SRPSRVELRREYSQRP--- 60
Query: 61 SVADKEYMDPRGITRRVGTTWKRTCQPPTSHPVDRRLRDLCTAF-FFLACVSPGGGAC 106
SVADKEYMDPRGITR VGTT KRTCQPPTSHPVDRRLRDLCTAF F L C G C
Sbjct: 61 SVADKEYMDPRGITRSVGTTKKRTCQPPTSHPVDRRLRDLCTAFIFLLVCPQVGVRVC 108
BLAST of Lcy08g016660 vs. NCBI nr
Match: KGN60767.1 (hypothetical protein Csa_019309 [Cucumis sativus]) HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16 Identity = 47/59 (79.66%), Postives = 48/59 (81.36%), Query Frame = 0
Query: 30 NRRLRAIQRGRAEPSPESVSVADKEYMDPRGITRRVGTTWKRTCQPPTSHPVDRRLRDL 89
N LR + RGR SVSVADKEYMDPRGITR VGTTWKRTCQPPTSHPVDRRLRDL
Sbjct: 4 NEGLRDVLRGR---EGWSVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LJ66 | 1.9e-16 | 79.66 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6586336.1 | 1.7e-19 | 56.78 | hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN60767.1 | 3.9e-16 | 79.66 | hypothetical protein Csa_019309 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
