Lcy08g016450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g016450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ankyrin repeat-containing protein
Location	Chr08: 47044157 .. 47044785 (-)
RNA-Seq Expression	Lcy08g016450
Synteny	Lcy08g016450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGGAGTTTTTATTAAAGAAACCAATGCTTGAAAGGCTGATCAACAAGCAAGATAAAGATGGCAACACGCCTTTGCATCTCGCTTCCCACTTTAAATTGCATGCTGTGATTGAAATTCTTGCCAGGACTAAAAATGTGTCTTTGAAAATTGCCAACAAGGAGTTCTTGACGCCACTTGAAGTCTACGATCAACATAATGAGGTAAGTTTTTTAGTCTATAGTCTTTTTTCCAAACTTTTTAGTTGGAGAATTTCGTTTTGTGGTTATACTTTTAATTTGATTTTGAACTTTTAGAGTGAGGGTTTACCTAATCATCCCTATTTTTGTCTTTTTTATTTGAAACAATGTGACATGACTTGACAATTAAAACGTGTTAGGTAGACTAAATTAGAGCAAGTGGATTAATGAGGCTAGATTTTTTTTTTTTTTTAGTTCAACAACATTTGAGGGTGGGAAAATTCAAACCGAGTATTTGTCAATTACTACTAAGTTATGCCCACTTTGGCGGAATGAGGTAGTTACATTTTAGAAAATTTTTCCACTAGGCCATAAAGCCACCAAATCAGATTGCATACCCAAATCGAATTAGTACACCCAAGACATCGTGCCAAATTATCCGTTAG

mRNA sequence

ATGGCTGTGGAGTTTTTATTAAAGAAACCAATGCTTGAAAGGCTGATCAACAAGCAAGATAAAGATGGCAACACGCCTTTGCATCTCGCTTCCCACTTTAAATTGCATGCTGTGATTGAAATTCTTGCCAGGACTAAAAATGTGTCTTTGAAAATTGCCAACAAGGAGTTCTTGACGCCACTTGAAGTCTACGATCAACATAATGAGGCCATAAAGCCACCAAATCAGATTGCATACCCAAATCGAATTAGTACACCCAAGACATCGTGCCAAATTATCCGTTAG

Coding sequence (CDS)

ATGGCTGTGGAGTTTTTATTAAAGAAACCAATGCTTGAAAGGCTGATCAACAAGCAAGATAAAGATGGCAACACGCCTTTGCATCTCGCTTCCCACTTTAAATTGCATGCTGTGATTGAAATTCTTGCCAGGACTAAAAATGTGTCTTTGAAAATTGCCAACAAGGAGTTCTTGACGCCACTTGAAGTCTACGATCAACATAATGAGGCCATAAAGCCACCAAATCAGATTGCATACCCAAATCGAATTAGTACACCCAAGACATCGTGCCAAATTATCCGTTAG

Protein sequence

MAVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLEVYDQHNEAIKPPNQIAYPNRISTPKTSCQIIR

Homology

[Close]

BLAST of Lcy08g016450 vs. ExPASy TrEMBL
Match: A0A6J1CNI9 (ankyrin-2-like OS=Momordica charantia OX=3673 GN=LOC111013103 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERL NKQDKDGNT LHLA   K +A I I+  +  +S +I N  FLTP 
Sbjct: 302 AVEFILKTPTLERLTNKQDKDGNTALHLAVLHKFYAAIHIITDSTKLSARIVNNRFLTPF 361

Query: 62  EVYDQHNEAI 72
           +V D+H+E +
Sbjct: 362 DVSDEHDEEV 371

[Close]

BLAST of Lcy08g016450 vs. ExPASy TrEMBL
Match: A0A5A7VAZ3 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00970 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERLINK D DG+TPLHLA+ FK   +I+I+   KNV   I N + LTPL
Sbjct: 306 AVEFILKTPRLERLINKSDTDGDTPLHLAARFKFVHIIQIIVSKKNVRFNIVNNKRLTPL 365

Query: 62  EVYDQH 68
           ++Y +H
Sbjct: 366 QLYSEH 371

[Close]

BLAST of Lcy08g016450 vs. ExPASy TrEMBL
Match: A0A5D3D4H9 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001670 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERLINK D DG+TPLHLA+ FK   +I+I+   KNV   I N + LTPL
Sbjct: 306 AVEFILKTPRLERLINKSDTDGDTPLHLAARFKFVHIIQIIVSKKNVRFNIVNNKRLTPL 365

Query: 62  EVYDQH 68
           ++Y +H
Sbjct: 366 QLYSEH 371

[Close]

BLAST of Lcy08g016450 vs. ExPASy TrEMBL
Match: A0A6J1CQ03 (ankyrin repeat-containing protein At5g02620-like OS=Momordica charantia OX=3673 GN=LOC111013102 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           +VEF+LK P LERLINKQD DGNT LHLA+  K +  IE++   K  + +IAN EFLTP 
Sbjct: 304 SVEFILKTPTLERLINKQDCDGNTALHLAALHKFYDAIEVITNHKIATWQIANNEFLTPF 363

Query: 62  EVYDQHNE 70
           +VY +H+E
Sbjct: 364 DVYKKHDE 371

[Close]

BLAST of Lcy08g016450 vs. ExPASy TrEMBL
Match: A0A6J1CN22 (ankyrin repeat-containing protein At5g02620-like OS=Momordica charantia OX=3673 GN=LOC111013104 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 3   VEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLE 62
           VEF+LK P LERLINKQD DGNT LHLA+  K +  IE++   K  + +IAN EF TP +
Sbjct: 304 VEFILKTPPLERLINKQDCDGNTTLHLAALHKFYDAIEVITNHKIATWQIANNEFSTPFD 363

Query: 63  VYDQHNE 70
           VY +H++
Sbjct: 364 VYKKHDQ 370

[Close]

BLAST of Lcy08g016450 vs. NCBI nr
Match: XP_022143169.1 (ankyrin-2-like [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERL NKQDKDGNT LHLA   K +A I I+  +  +S +I N  FLTP 
Sbjct: 302 AVEFILKTPTLERLTNKQDKDGNTALHLAVLHKFYAAIHIITDSTKLSARIVNNRFLTPF 361

Query: 62  EVYDQHNEAI 72
           +V D+H+E +
Sbjct: 362 DVSDEHDEEV 371

[Close]

BLAST of Lcy08g016450 vs. NCBI nr
Match: KAA0063586.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERLINK D DG+TPLHLA+ FK   +I+I+   KNV   I N + LTPL
Sbjct: 306 AVEFILKTPRLERLINKSDTDGDTPLHLAARFKFVHIIQIIVSKKNVRFNIVNNKRLTPL 365

Query: 62  EVYDQH 68
           ++Y +H
Sbjct: 366 QLYSEH 371

[Close]

BLAST of Lcy08g016450 vs. NCBI nr
Match: TYK18441.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           AVEF+LK P LERLINK D DG+TPLHLA+ FK   +I+I+   KNV   I N + LTPL
Sbjct: 306 AVEFILKTPRLERLINKSDTDGDTPLHLAARFKFVHIIQIIVSKKNVRFNIVNNKRLTPL 365

Query: 62  EVYDQH 68
           ++Y +H
Sbjct: 366 QLYSEH 371

[Close]

BLAST of Lcy08g016450 vs. NCBI nr
Match: XP_022143167.1 (ankyrin repeat-containing protein At5g02620-like [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPL 61
           +VEF+LK P LERLINKQD DGNT LHLA+  K +  IE++   K  + +IAN EFLTP 
Sbjct: 304 SVEFILKTPTLERLINKQDCDGNTALHLAALHKFYDAIEVITNHKIATWQIANNEFLTPF 363

Query: 62  EVYDQHNE 70
           +VY +H+E
Sbjct: 364 DVYKKHDE 371

[Close]

BLAST of Lcy08g016450 vs. NCBI nr
Match: XP_022143170.1 (ankyrin repeat-containing protein At5g02620-like [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 9.5e-11
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 3   VEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLE 62
           VEF+LK P LERLINKQD DGNT LHLA+  K +  IE++   K  + +IAN EF TP +
Sbjct: 304 VEFILKTPPLERLINKQDCDGNTTLHLAALHKFYDAIEVITNHKIATWQIANNEFSTPFD 363

Query: 63  VYDQHNE 70
           VY +H++
Sbjct: 364 VYKKHDQ 370

[Close]

BLAST of Lcy08g016450 vs. TAIR 10
Match: AT5G15500.1 (Ankyrin repeat family protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 14  RLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLEVYDQHN 69
           R+IN++DKDGNTPLHLA++      +++L  +  +++ I NK  LT  ++   HN
Sbjct: 75  RVINRRDKDGNTPLHLAAYEINRQAMKLLLESSKINVNIENKNGLTVFDIAVLHN 129

[Close]

BLAST of Lcy08g016450 vs. TAIR 10
Match: AT5G15500.2 (Ankyrin repeat family protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 14  RLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLEVYDQHN 69
           R+IN++DKDGNTPLHLA++      +++L  +  +++ I NK  LT  ++   HN
Sbjct: 181 RVINRRDKDGNTPLHLAAYEINRQAMKLLLESSKINVNIENKNGLTVFDIAVLHN 235

[Close]

BLAST of Lcy08g016450 vs. TAIR 10
Match: AT1G03670.1 (ankyrin repeat family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 3   VEFLLKKPMLERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLE 62
           V++LLK    +R++N+QD +GNTPLHLA+  +   V+ +L     ++L+  N E  T L+
Sbjct: 337 VKYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALNNEGFTALD 396

Query: 63  V 64
           +
Sbjct: 397 I 397

[Close]

BLAST of Lcy08g016450 vs. TAIR 10
Match: AT4G03460.1 (Ankyrin repeat family protein )

HSP 1 Score: 44.3 bits (103), Expect = 6.4e-05
Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 13  ERLINKQDKDGNTPLHLASHFKLHAVIEILARTKNVSLKIANKEFLTPLEVYDQHNEA 71
           E+LIN++D +GNTPLHLA+      V+ +L     V LK  N + +T L++ +++ ++
Sbjct: 413 EKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMDS 470

[Close]

BLAST of Lcy08g016450 vs. TAIR 10
Match: AT4G03490.1 (Ankyrin repeat family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 2   AVEFLLKKPMLERLINKQDKDGNTPLHLAS 32
           AV +LL+K  ++RLIN+QD +GNTPLHLAS
Sbjct: 317 AVGYLLRKSDVKRLINEQDIEGNTPLHLAS 346

The following BLAST results are available for this feature:

BLAST of Lcy08g016450 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g016450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNI9	1.1e-12	55.71	ankyrin-2-like OS=Momordica charantia OX=3673 GN=LOC111013103 PE=4 SV=1	[more]
A0A5A7VAZ3	1.4e-12	57.58	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D4H9	1.4e-12	57.58	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1CQ03	1.9e-12	57.35	ankyrin repeat-containing protein At5g02620-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1CN22	4.6e-11	55.22	ankyrin repeat-containing protein At5g02620-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of Lcy08g016450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143169.1	2.3e-12	55.71	ankyrin-2-like [Momordica charantia]	[more]
KAA0063586.1	3.0e-12	57.58	ankyrin repeat-containing protein [Cucumis melo var. makuwa]	[more]
TYK18441.1	3.0e-12	57.58	ankyrin repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_022143167.1	3.9e-12	57.35	ankyrin repeat-containing protein At5g02620-like [Momordica charantia]	[more]
XP_022143170.1	9.5e-11	55.22	ankyrin repeat-containing protein At5g02620-like [Momordica charantia]	[more]

BLAST of Lcy08g016450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15500.1	1.5e-06	40.00	Ankyrin repeat family protein	[more]
AT5G15500.2	1.5e-06	40.00	Ankyrin repeat family protein	[more]
AT1G03670.1	2.0e-06	37.70	ankyrin repeat family protein	[more]
AT4G03460.1	6.4e-05	36.21	Ankyrin repeat family protein	[more]
AT4G03490.1	1.1e-04	66.67	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	PFAM	PF00023	Ank	coord: 22..42 e-value: 2.2E-4 score: 21.5
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 1..72 e-value: 3.1E-10 score: 41.9
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 3..63
None	No IPR available	PANTHER	PTHR24178:SF18	ANKYRIN REPEAT PROTEIN	coord: 2..69
None	No IPR available	PANTHER	PTHR24178	MOLTING PROTEIN MLT-4	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g016450.1	Lcy08g016450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding