Lcy08g016290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g016290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	PSII 6.1 kDa protein
Location	Chr08: 46865013 .. 46866659 (-)
RNA-Seq Expression	Lcy08g016290
Synteny	Lcy08g016290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGACTCAAACTTTCACTACTGCACATGGATGGGAGGGACACGTGGAGAGCAGGGATTGGATGGATGAGGATTGAAAATAAGGAACTATTTGGCTGTTCCCATATCCAAATTGTGTGGTGCATAAAAAACAACATTTTCCACTACAAATCACAACTTAAAAACACAAAAACAGAAGAAGAATCTCCAGATCTAGCAGGTTTCTTTGGCCGGAAACAATGGCTTCCACTCTGCTTTCTCACTCCGGGCTTGTGCTCAAAGGATCAGCCAAGGTCATTCTTCCATCGCCAACAATGGCAGCTCACCGTGAGTTTCTTCAGTTTCCAAGCAGCTTTTGCAGTACTTTTTGGATTCCATTGGAGAAAAAGCCATTACTTTCTTTATCTTCACTTGATGAACTGAACTGGGTTTTGGCTTGATGTTTCATTTTTCAAGTTTAATTATCATTTTAGTCCTCGCTATTTCCTATAATTCAGTACGACCTTTTCGAAACGTCTAGTTTCTTATGTGACATGTTTTCTTTAGATATGGAGAATAAGTTGACATTTGATTGAGAATATATGTGAAAGTTAAATTGGTCGACTGAGATGGATGTTTTCTTCCTGTCTCTAGTCTCTGGTGTTTCCATCTATCTACGACTATTTAATTGTTCATCCTGCCTTGGGCCTTTTGTTTGTTGCTCTTTGATCGACTTCGGTTCGAGTCTCGAAGGCCATTTAAGTTTGAATCAGTAAAAAGCAGAGAACATCATATTCATTATCAAGGAAAGAGGAAATAGATTGTTAAAGAGTGGATCTTGTTGCATATTTTTAAAAACTTTAGTCTCCAAAATGCTTCACTTTTTCTCTCTTTGTTATCCTATTGAAAACATGCCATGTTAAGAAAATGATTAACATTGGTTAAGTTGATTCAAATTGAGATTATAGTTGAATTGAAATCAAGCTCAAATCTTTGTACCAAAATGTTTAATTTAGCCTATTTTCCTTGATGATTTGAGTTATCATAGGACAGAAATTTGAAAGTGGATTTTTGCAGGGTTGCCTGTGTTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCCAGAAGGAAAGAGCTCAGAAGAAAGTATGATTTCCGCGACGGTGGCGGCCGTGGCGACGGCTGCGGTGGCAGCGGCAGGTCCCGCGGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGCACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCCCTCTGAATCAATCACAACATTTCTTGATTAAAAATGGACTATTCCGTCAACATTTCTATTAAAATGAGGACGGAAAAGTGACGTGACAATGACTTGCAAAATAGTGGTGTTCATAATAGAGGGCATGCCCCTGGAACTTTGAGTTGAGTTTTAATAACGATGCCCTTAACCTTTACAATTGTTTCGAAATAACTATTTCATTACCTTCCCTGTTAAAGTTAAAAATATATAATGTGATGATAAGTCGAAAAACCAGGGTGAGATATGGGCATACTTTGGTGTTGAGCCATCAAGAAACGAAG

mRNA sequence

TATGACTCAAACTTTCACTACTGCACATGGATGGGAGGGACACGTGGAGAGCAGGGATTGGATGGATGAGGATTGAAAATAAGGAACTATTTGGCTGTTCCCATATCCAAATTGTGTGGTGCATAAAAAACAACATTTTCCACTACAAATCACAACTTAAAAACACAAAAACAGAAGAAGAATCTCCAGATCTAGCAGGTTTCTTTGGCCGGAAACAATGGCTTCCACTCTGCTTTCTCACTCCGGGCTTGTGCTCAAAGGATCAGCCAAGGTCATTCTTCCATCGCCAACAATGGCAGCTCACCGGTTGCCTGTGTTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCCAGAAGGAAAGAGCTCAGAAGAAAGTATGATTTCCGCGACGGTGGCGGCCGTGGCGACGGCTGCGGTGGCAGCGGCAGGTCCCGCGGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGCACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCCCTCTGAATCAATCACAACATTTCTTGATTAAAAATGGACTATTCCGTCAACATTTCTATTAAAATGAGGACGGAAAAGTGACGTGACAATGACTTGCAAAATAGTGGTGTTCATAATAGAGGGCATGCCCCTGGAACTTTGAGTTGAGTTTTAATAACGATGCCCTTAACCTTTACAATTGTTTCGAAATAACTATTTCATTACCTTCCCTGTTAAAGTTAAAAATATATAATGTGATGATAAGTCGAAAAACCAGGGTGAGATATGGGCATACTTTGGTGTTGAGCCATCAAGAAACGAAG

Coding sequence (CDS)

ATGGCTTCCACTCTGCTTTCTCACTCCGGGCTTGTGCTCAAAGGATCAGCCAAGGTCATTCTTCCATCGCCAACAATGGCAGCTCACCGGTTGCCTGTGTTGCAAAAGATGAAGAAGGGAGGGATTAAGTGCAGGTTGGAAGAGAAGCCAGAAGGAAAGAGCTCAGAAGAAAGTATGATTTCCGCGACGGTGGCGGCCGTGGCGACGGCTGCGGTGGCAGCGGCAGGTCCCGCGGTGGCGCTGGTGGATGAGAGATTGAGCACAGAAGGCACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCCCTCTGA

Protein sequence

MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSGLSL

Homology

[Close]

BLAST of Lcy08g016290 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-27
Identity = 77/138 (55.80%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEES 60
           MAS   S S +     A ++ P+  ++A    LP + K KKGG++C +E     K    S
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMET----KQGNVS 60

Query: 61  MISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWAL 120
           ++ A V+A ATAA+ A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  
Sbjct: 61  VMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTF 120

Query: 121 YFVYASSLEEDEDSGLSL 135
           +FVY SSLEEDE+SGLSL
Sbjct: 121 FFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Lcy08g016290 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-25
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 2   ASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPE----GKSSEE 61
           +++L++ + LV   S   +  SP +    LP + K  K  + C +E KP       ++ +
Sbjct: 9   SASLVARASLV-HNSRVGVSSSPILG---LPSMTKRSK--VTCSIENKPSTTETTTTTNK 68

Query: 62  SMISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALY 121
           SM ++ +AA A A +  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALY
Sbjct: 69  SMGASLLAAAAAATI--SNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 128

Query: 122 FVYASSLEEDEDSGLSL 135
           FVYAS LEEDE+SGLSL
Sbjct: 129 FVYASGLEEDEESGLSL 137

[Close]

BLAST of Lcy08g016290 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 17  AKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMISATVAAVATAAVAAAG 76
           A+ +L  P      LP ++  +   ++C   ++    ++      A++ A+A    A A 
Sbjct: 14  ARAVLAGPL----GLPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMA----ATAA 73

Query: 77  PAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYASSLEEDEDSG 132
           PA+ALVDER+STEGTGL  GLSNNLLGWIL GVFGLIW+LY +Y S LEEDE+SG
Sbjct: 74  PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Lcy08g016290 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-11
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 58  SMISATVAAVAT-AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWAL 117
           S ++  VA ++T  A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA+
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 118 YFVYASSLE--EDEDSGLSL 135
           +F+    L   ED D GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.4e-52
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSG+ LKGS K +LP P MAAHRLPV+QKMKKGGIKC+LEEK EGK S+ES+I
Sbjct: 1   MASTLLSHSGITLKGSPK-LLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLI 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S TVAA+AT  VA AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVY
Sbjct: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSLEEDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL
Match: A0A6J1HLU7 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.8e-51
Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSG+ LKGS K +LP P MAAHRL V+QK KKGGIKCRLEEK E KSS+ESMI
Sbjct: 1   MASTLLSHSGITLKGSPK-LLPPPLMAAHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMI 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVY
Sbjct: 61  SGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSLEEDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.2e-50
Identity = 112/134 (83.58%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLL HS L+LKGS+K +LPS TMAA RLP LQKMK G IKC++EEKPEGK SEESM+
Sbjct: 1   MASTLLPHSRLLLKGSSK-LLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMV 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
             TVAAVA AA+AAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVY
Sbjct: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 114/135 (84.44%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKS-SEESM 60
           MASTLL HS L+LKGS+K +L SPTMAAHRLP LQKMKKGGIKC +EEKPEGK  SEESM
Sbjct: 1   MASTLLPHSRLLLKGSSK-LLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESM 60

Query: 61  ISATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFV 120
           +  TV AVA AA+AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILA VF LIWALYFV
Sbjct: 61  VPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFV 120

Query: 121 YASSLEEDEDSGLSL 135
           YASSL+EDEDSGLSL
Sbjct: 121 YASSLDEDEDSGLSL 134

[Close]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL
Match: A0A6J1CNY5 (PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.2e-46
Identity = 106/134 (79.10%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSGL LKGS K + P P MAA RL ++ KMKKGGIKC++EE+PE KSS ES +
Sbjct: 1   MASTLLSHSGLTLKGSPK-LHPLPAMAAPRLLMVPKMKKGGIKCKVEERPECKSSGESTV 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S T+AAV  A VAAAGPA ALVDERLSTEGTGLPFGLSNNLL WILAGVF LIWALYFVY
Sbjct: 61  SVTMAAVVAAVVAAAGPAAALVDERLSTEGTGLPFGLSNNLLAWILAGVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 117/134 (87.31%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHS L+LKGS+KV LPSP +AAHRLP+LQKMKKGGIKCR+EEKPEGK SEES++
Sbjct: 1   MASTLLSHSRLLLKGSSKV-LPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLV 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S T+AAVA AA+AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVF LIWALYFVY
Sbjct: 61  SGTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 5.4e-52
Identity = 116/134 (86.57%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSG+ LKGS K +LP P MAAHRL V+QKMKKGGIKCRLEEK EGK S+ESMI
Sbjct: 1   MASTLLSHSGITLKGSPK-LLPPPLMAAHRLSVVQKMKKGGIKCRLEEKQEGKRSKESMI 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVY
Sbjct: 61  SGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSLEEDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.2 bits (544), Expect = 7.1e-52
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSG+ LKGS K +LP P MAAHRLPV+QKMKKGGIKC+LEEK EGK S+ES+I
Sbjct: 1   MASTLLSHSGITLKGSPK-LLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLI 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S TVAA+AT  VA AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVY
Sbjct: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSLEEDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. NCBI nr
Match: XP_022966002.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 7.8e-51
Identity = 115/134 (85.82%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLLSHSG+ LKGS K +LP P MAAHRL V+QK KKGGIKCRLEEK E KSS+ESMI
Sbjct: 1   MASTLLSHSGITLKGSPK-LLPPPLMAAHRLSVVQKRKKGGIKCRLEEKQEVKSSKESMI 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
           S TVAAVAT  VA AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYFVY
Sbjct: 61  SGTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSLEEDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-50
Identity = 112/134 (83.58%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAHRLPVLQKMKKGGIKCRLEEKPEGKSSEESMI 60
           MASTLL HS L+LKGS+K +LPS TMAA RLP LQKMK G IKC++EEKPEGK SEESM+
Sbjct: 1   MASTLLPHSRLLLKGSSK-LLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMV 60

Query: 61  SATVAAVATAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVY 120
             TVAAVA AA+AAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYFVY
Sbjct: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120

Query: 121 ASSLEEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of Lcy08g016290 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-28
Identity = 77/138 (55.80%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MASTLLSHSGLVLKGSAKVILPSPTMAAH--RLPVLQKMKKGGIKCRLEEKPEGKSSEES 60
           MAS   S S +     A ++ P+  ++A    LP + K KKGG++C +E     K    S
Sbjct: 1   MASFTASASTVSAARPALLLKPTVAISAPVLGLPPMGK-KKGGVRCSMET----KQGNVS 60

Query: 61  MISATVAAVATAAVAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWAL 120
           ++ A V+A ATAA+ A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  
Sbjct: 61  VMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTF 120

Query: 121 YFVYASSLEEDEDSGLSL 135
           +FVY SSLEEDE+SGLSL
Sbjct: 121 FFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Lcy08g016290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	6.3e-27	55.80	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	2.6e-25	53.28	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	2.8e-19	47.83	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	4.8e-11	48.75	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Lcy08g016290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBR0	3.4e-52	85.07	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1HLU7	3.8e-51	85.82	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111465720 PE=3 SV=1	[more]
A0A1S3C2B0	3.2e-50	83.58	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	1.2e-49	84.44	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1CNY5	8.2e-46	79.10	PSII 6.1 kDa protein OS=Momordica charantia OX=3673 GN=LOC111013009 PE=3 SV=1	[more]

BLAST of Lcy08g016290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890119.1	1.7e-53	87.31	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_023521133.1	5.4e-52	86.57	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022937622.1	7.1e-52	85.07	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]
XP_022966002.1	7.8e-51	85.82	photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_008456049.1	6.6e-50	83.58	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]

BLAST of Lcy08g016290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	4.5e-28	55.80	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 28..134 e-value: 4.6E-44 score: 149.6
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..134
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g016290.1	Lcy08g016290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast