Lcy08g016170 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g016170
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr08: 46724819 .. 46725574 (-)
RNA-Seq Expression	Lcy08g016170
Synteny	Lcy08g016170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCGATAGCCTCGGTCTTCCCCGATTCCGACTCCTCCCCTGCTCTTGGCTTTCGTTGTTCCCTCACTGATAGAGAGGTGGCAGAGGTCGTCAGTCTTCTTTCCCTTTTGGTTGTCCAGTCGTTTCATCTTGGGAGAAGGGACTCTCGGTTCTGGACCCCGAAGCCTTCTGAGGGCTTCTCTTGTGCTTCTTTTTTTCGTTCTCTTTCTATGTCTCACCCTCCTCCAAAAGCCTCCATTTTCTCCTCGATATGGAGGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGGGAAGTTTTACATGGTCGGGTGAATACTCAGGATCAGATCCAAAGGTTCTCCTCTTTCGTGTTGTGGCCGCAGTGGTGTGTCCTCTCTAGGAGTCAGGAGGAGGACCTAGATCATTTGCTTTGGGATTTTCCTTTCGTCTACTCTATTTGGAGTCAGTTCTTCAAGGTGTTTGGGGTTGCTTCGGCTCGTAACATTGACTGCTTCTCTATGTTTGAGGAAATCCTTTGGCATCCTCCTTTTCGTGACAAAGGGAGAGTTATTTGGCAAGCGTGCTTCTTTGCTATTTTGTGGGATGTTTGGCTTGAGAGGAATAGTAGAATTTTTAGAGGGGTGGAGAAATCCACGAATGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGCGTCTGTTTCTAAGCTTTTTTGTAATTATCAGCTTGGTCTTATTATTTTGGATTGGGACCCGTTCTTGTAG

mRNA sequence

ATGTATTCGATAGCCTCGGTCTTCCCCGATTCCGACTCCTCCCCTGCTCTTGGCTTTCGTTGTTCCCTCACTGATAGAGAGGTGGCAGAGGTCGTCAGTCTTCTTTCCCTTTTGGTTGTCCAGTCGTTTCATCTTGGGAGAAGGGACTCTCGGTTCTGGACCCCGAAGCCTTCTGAGGGCTTCTCTTGTGCTTCTTTTTTTCGTTCTCTTTCTATGTCTCACCCTCCTCCAAAAGCCTCCATTTTCTCCTCGATATGGAGGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGGGAAGTTTTACATGGTCGGGTGAATACTCAGGATCAGATCCAAAGGTTCTCCTCTTTCGTGTTGTGGCCGCAGTGGTGTGTCCTCTCTAGGAGTCAGGAGGAGGACCTAGATCATTTGCTTTGGGATTTTCCTTTCGTCTACTCTATTTGGAGTCAGTTCTTCAAGGTGTTTGGGGTTGCTTCGGCTCGTAACATTGACTGCTTCTCTATGTTTGAGGAAATCCTTTGGCATCCTCCTTTTCGTGACAAAGGGAGAGTTATTTGGCAAGCGTGCTTCTTTGCTATTTTGTGGGATGTTTGGCTTGAGAGGAATAGTAGAATTTTTAGAGGGGTGGAGAAATCCACGAATGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGCGTCTGTTTCTAAGCTTTTTTGTAATTATCAGCTTGGTCTTATTATTTTGGATTGGGACCCGTTCTTGTAG

Coding sequence (CDS)

ATGTATTCGATAGCCTCGGTCTTCCCCGATTCCGACTCCTCCCCTGCTCTTGGCTTTCGTTGTTCCCTCACTGATAGAGAGGTGGCAGAGGTCGTCAGTCTTCTTTCCCTTTTGGTTGTCCAGTCGTTTCATCTTGGGAGAAGGGACTCTCGGTTCTGGACCCCGAAGCCTTCTGAGGGCTTCTCTTGTGCTTCTTTTTTTCGTTCTCTTTCTATGTCTCACCCTCCTCCAAAAGCCTCCATTTTCTCCTCGATATGGAGGGTCAAAATTCCCAAGAAAGTGAAGTTCTTTGCCTGGGAAGTTTTACATGGTCGGGTGAATACTCAGGATCAGATCCAAAGGTTCTCCTCTTTCGTGTTGTGGCCGCAGTGGTGTGTCCTCTCTAGGAGTCAGGAGGAGGACCTAGATCATTTGCTTTGGGATTTTCCTTTCGTCTACTCTATTTGGAGTCAGTTCTTCAAGGTGTTTGGGGTTGCTTCGGCTCGTAACATTGACTGCTTCTCTATGTTTGAGGAAATCCTTTGGCATCCTCCTTTTCGTGACAAAGGGAGAGTTATTTGGCAAGCGTGCTTCTTTGCTATTTTGTGGGATGTTTGGCTTGAGAGGAATAGTAGAATTTTTAGAGGGGTGGAGAAATCCACGAATGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGCGTCTGTTTCTAAGCTTTTTTGTAATTATCAGCTTGGTCTTATTATTTTGGATTGGGACCCGTTCTTGTAG

Protein sequence

MYSIASVFPDSDSSPALGFRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQRFSSFVLWPQWCVLSRSQEEDLDHLLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPPFRDKGRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGLIILDWDPFL

Homology

[Close]

BLAST of Lcy08g016170 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 47/172 (27.33%), Postives = 72/172 (41.86%), Query Frame = 0


Query: 39  VVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSH--PPPKASIFSSIWRVKIPKKVKF 98
           VV     G RD   W       FS  S +  L++     P  AS F+ +W+V++P++VK 
Sbjct: 243 VVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKT 302

Query: 99  FAWEVLHGRVNTQDQIQRFSSFVLWPQWCVLSRSQEEDLDHLLWDFPFVYSIWSQFFKVF 158
           F W V +  V T++  +R    +     C + +   E + H+L D P    IW    +V 
Sbjct: 303 FLWLVGNQAVMTEE--ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIW---VRVV 362

Query: 159 GVASARNIDCFSMFEEILWHPPFRDKGRVI-WQACFFAILWDVWLERNSRIF 208
                +     S+FE +  +   R     I W   F  I+W  W  R   IF
Sbjct: 363 PQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 409

[Close]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL
Match: A0A438K969 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 85/245 (34.69%), Postives = 120/245 (48.98%), Query Frame = 0


Query: 19  FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
           FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P  
Sbjct: 242 FRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSFFYALSKVSNPLM 301

Query: 79  ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                 +W  K+P KVK  AW V HG+VNT D++Q R     L+PQWC+L +   E +DH
Sbjct: 302 FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYPQWCILCKGHGESIDH 361

Query: 139 LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP----------FRD-----K 198
           L    P    +W + F + GV               +W PP          F+      +
Sbjct: 362 LFLHCPITIGLWHRLFNLVGV---------------IWVPPRSLEDMLVISFKGLGNSLR 421

Query: 199 GRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGL 248
           G+ +WQ     ++W VW ERN+RIF    ++   +W++IRF SSLWAS +K F    L +
Sbjct: 422 GKTLWQIACLTLIWMVWHERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAFRGVPLSI 471

[Close]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL
Match: A0A438J1R4 (Actin-related protein 7 OS=Vitis vinifera OX=29760 GN=ARP7_3 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-33
Identity = 88/248 (35.48%), Postives = 122/248 (49.19%), Query Frame = 0


Query: 17  LGFRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPP 76
           L FR +LTD E+  +  L+S L    F     DSR W+   S+ FS  SFF + S    P
Sbjct: 476 LNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSDLFSVKSFFLASSKVSNP 535

Query: 77  PKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDL 136
                   +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +
Sbjct: 536 ILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESI 595

Query: 137 DHLLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP--FRD------------ 196
           DHL    P    +W++ FK+ G+                W PP  F D            
Sbjct: 596 DHLFLHCPVTIGLWNKLFKLVGLD---------------WVPPRSFEDMLVIAFKGLGNS 655

Query: 197 -KGRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQL 249
            +G+ +WQ     ++W VW ERN+RIF+   +S   LW++I F SSLWAS S  F    L
Sbjct: 656 LRGKTLWQVACLTLVWIVWQERNNRIFKDKGRSEETLWDLILFYSSLWASCSAAFRGVPL 708

[Close]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL
Match: A0A438KG54 (Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-33
Identity = 81/230 (35.22%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 19  FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
           FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P K
Sbjct: 361 FRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDLNPLK 420

Query: 79  ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                 +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +DH
Sbjct: 421 FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDH 480

Query: 139 LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPPFRDKGRVIWQACFFAILWD 198
           L    P    +W + F + GV+         M            +G+++WQ     ++W 
Sbjct: 481 LFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDMLVISFKGLGNSVRGKILWQIACLTLIWM 540

Query: 199 VWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGLIILDW 248
           VW ERN+RIF    ++   +W++IRF SSLWAS ++ F    L ++ ++W
Sbjct: 541 VWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQINW 590

[Close]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL
Match: A5BQI4 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.7e-33
Identity = 87/248 (35.08%), Postives = 121/248 (48.79%), Query Frame = 0


Query: 17  LGFRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPP 76
           L FR +LTD E+  +  L+S L    F     DSR W+   S  F+  SFF +LS    P
Sbjct: 640 LNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVSNP 699

Query: 77  PKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDL 136
                   +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L ++  E +
Sbjct: 700 ILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESI 759

Query: 137 DHLLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP--FRD------------ 196
           DHL    P    +W++ FK+ G+                W PP  F D            
Sbjct: 760 DHLFLHCPVTIGLWNKLFKMAGLD---------------WVPPRSFEDMLVIAFKGLGNS 819

Query: 197 -KGRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQL 249
            +G+ +WQ     ++W VW ERN RIF    +S   LW++I F S+LWAS S  F    L
Sbjct: 820 LRGKTLWQVACLTLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTLWASCSAAFRGVPL 872

[Close]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL
Match: A0A438C911 (Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=29760 GN=SMC3_7 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.7e-33
Identity = 84/248 (33.87%), Postives = 121/248 (48.79%), Query Frame = 0


Query: 19   FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
            FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P  
Sbjct: 782  FRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSRDSNPLM 841

Query: 79   ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                  +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +DH
Sbjct: 842  FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDH 901

Query: 139  LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP----------FRD-----K 198
            L    P    +W + F + GV               +W PP          F+      +
Sbjct: 902  LFLHCPITIGLWHRLFNLVGV---------------IWVPPRSIEDMLVISFKGLGNSVR 961

Query: 199  GRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGL 251
            G+++WQ     ++W VW ERN+RIF    ++   +W++IRF SSLWAS ++ F    L +
Sbjct: 962  GKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSI 1014

[Close]

BLAST of Lcy08g016170 vs. NCBI nr
Match: RVX17758.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-33
Identity = 85/245 (34.69%), Postives = 120/245 (48.98%), Query Frame = 0


Query: 19  FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
           FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P  
Sbjct: 242 FRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSFFYALSKVSNPLM 301

Query: 79  ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                 +W  K+P KVK  AW V HG+VNT D++Q R     L+PQWC+L +   E +DH
Sbjct: 302 FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYPQWCILCKGHGESIDH 361

Query: 139 LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP----------FRD-----K 198
           L    P    +W + F + GV               +W PP          F+      +
Sbjct: 362 LFLHCPITIGLWHRLFNLVGV---------------IWVPPRSLEDMLVISFKGLGNSLR 421

Query: 199 GRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGL 248
           G+ +WQ     ++W VW ERN+RIF    ++   +W++IRF SSLWAS +K F    L +
Sbjct: 422 GKTLWQIACLTLIWMVWHERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAFRGVPLSI 471

[Close]

BLAST of Lcy08g016170 vs. NCBI nr
Match: RVX02903.1 (Actin-related protein 7 [Vitis vinifera])

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-33
Identity = 88/248 (35.48%), Postives = 122/248 (49.19%), Query Frame = 0


Query: 17  LGFRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPP 76
           L FR +LTD E+  +  L+S L    F     DSR W+   S+ FS  SFF + S    P
Sbjct: 476 LNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSDLFSVKSFFLASSKVSNP 535

Query: 77  PKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDL 136
                   +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +
Sbjct: 536 ILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESI 595

Query: 137 DHLLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP--FRD------------ 196
           DHL    P    +W++ FK+ G+                W PP  F D            
Sbjct: 596 DHLFLHCPVTIGLWNKLFKLVGLD---------------WVPPRSFEDMLVIAFKGLGNS 655

Query: 197 -KGRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQL 249
            +G+ +WQ     ++W VW ERN+RIF+   +S   LW++I F SSLWAS S  F    L
Sbjct: 656 LRGKTLWQVACLTLVWIVWQERNNRIFKDKGRSEETLWDLILFYSSLWASCSAAFRGVPL 708

[Close]

BLAST of Lcy08g016170 vs. NCBI nr
Match: RVX20160.1 (Protein RETICULATA, chloroplastic [Vitis vinifera])

HSP 1 Score: 152.5 bits (384), Expect = 4.8e-33
Identity = 81/230 (35.22%), Postives = 117/230 (50.87%), Query Frame = 0


Query: 19  FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
           FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P K
Sbjct: 361 FRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDLNPLK 420

Query: 79  ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                 +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +DH
Sbjct: 421 FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDH 480

Query: 139 LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPPFRDKGRVIWQACFFAILWD 198
           L    P    +W + F + GV+         M            +G+++WQ     ++W 
Sbjct: 481 LFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDMLVISFKGLGNSVRGKILWQIACLTLIWM 540

Query: 199 VWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGLIILDW 248
           VW ERN+RIF    ++   +W++IRF SSLWAS ++ F    L ++ ++W
Sbjct: 541 VWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQINW 590

[Close]

BLAST of Lcy08g016170 vs. NCBI nr
Match: RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-32
Identity = 84/248 (33.87%), Postives = 121/248 (48.79%), Query Frame = 0


Query: 19   FRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPPPK 78
            FR +LTD E+  +  L+S L          DSR W+   S  FS  SFF +LS    P  
Sbjct: 782  FRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSRDSNPLM 841

Query: 79   ASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDLDH 138
                  +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L +   E +DH
Sbjct: 842  FLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDH 901

Query: 139  LLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP----------FRD-----K 198
            L    P    +W + F + GV               +W PP          F+      +
Sbjct: 902  LFLHCPITIGLWHRLFNLVGV---------------IWVPPRSIEDMLVISFKGLGNSVR 961

Query: 199  GRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQLGL 251
            G+++WQ     ++W VW ERN+RIF    ++   +W++IRF SSLWAS ++ F    L +
Sbjct: 962  GKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSI 1014

[Close]

BLAST of Lcy08g016170 vs. NCBI nr
Match: CAN70431.1 (hypothetical protein VITISV_030910 [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-32
Identity = 87/248 (35.08%), Postives = 121/248 (48.79%), Query Frame = 0


Query: 17  LGFRCSLTDREVAEVVSLLSLLVVQSFHLGRRDSRFWTPKPSEGFSCASFFRSLSMSHPP 76
           L FR +LTD E+  +  L+S L    F     DSR W+   S  F+  SFF +LS    P
Sbjct: 640 LNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVSNP 699

Query: 77  PKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQ-RFSSFVLWPQWCVLSRSQEEDL 136
                   +W  K+P KVK  AW V HG+VNT D++Q R     L PQWC+L ++  E +
Sbjct: 700 ILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESI 759

Query: 137 DHLLWDFPFVYSIWSQFFKVFGVASARNIDCFSMFEEILWHPP--FRD------------ 196
           DHL    P    +W++ FK+ G+                W PP  F D            
Sbjct: 760 DHLFLHCPVTIGLWNKLFKMAGLD---------------WVPPRSFEDMLVIAFKGLGNS 819

Query: 197 -KGRVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLWASVSKLFCNYQL 249
            +G+ +WQ     ++W VW ERN RIF    +S   LW++I F S+LWAS S  F    L
Sbjct: 820 LRGKTLWQVACLTLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTLWASCSAAFRGVPL 872

[Close]

BLAST of Lcy08g016170 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-09
Identity = 46/180 (25.56%), Postives = 80/180 (44.44%), Query Frame = 0


Query: 49  DSRFWTP---KPSEGFSCASFFRSL-SMSHPPPKASIFSSIWRVKIPKKVKFFAWEVLHG 108
           DS  W      PS  FS    + +L   SH  P      ++W      K  F  W V   
Sbjct: 96  DSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVP---WHKAVWFKNHVPKHAFICWVVAWN 155

Query: 109 RVNTQDQIQRFSSFVLWPQWCVLSRSQEEDLDHLLWDFPFVYSIWSQFFKVFGV-ASARN 168
           R++T+D++Q +   +  P  C+L  + ++   HL ++  F   +W  F     +   A+ 
Sbjct: 156 RLHTRDRLQNWGLSI--PAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQL 215

Query: 169 IDCFSMFEEILWHPPFRDKG-RVIWQACFFAILWDVWLERNSRIFRGVEKSTNELWEMIR 223
           +DC +         P R+K   +I +  F + ++ +W ERN R+  GV +ST  + + I+
Sbjct: 216 MDCLNWLLS-----PSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQ 265

[Close]

BLAST of Lcy08g016170 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-08
Identity = 44/169 (26.04%), Postives = 73/169 (43.20%), Query Frame = 0


Query: 49  DSRFWTP---KPSEGFSCASFFRSLSMSHPPPKASIFSSIWRVKIPKKVKFFAWEVLHGR 108
           DS  W      PS  FS A    SL++         + ++W      K  F  W V   R
Sbjct: 118 DSFIWKTDLHAPSNIFSTAK--TSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNR 177

Query: 109 VNTQDQIQRFSSFVLWPQWCVLSRSQEEDLDHLLWDFPFVYSIWSQFFKVFGVASARNID 168
           ++T+D+++ +   +  P  C+L  S +E   HL ++ PF  ++W      F    A    
Sbjct: 178 LHTRDRLRSWGLSI--PAVCLLCNSHDESRAHLFFECPFCGAVWR-----FFTGRANLFP 237

Query: 169 CFSMFEEILW-HPPFRDKG-RVIWQACFFAILWDVWLERNSRIFRGVEK 213
              +   ++W   P RDK   +I +  F A ++ +W ERN  +  GV +
Sbjct: 238 PAQLMYCLIWLLNPSRDKNTTLIIRLAFQAYVYAIWRERNLCLHTGVAR 277

[Close]

BLAST of Lcy08g016170 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-08
Identity = 40/160 (25.00%), Postives = 66/160 (41.25%), Query Frame = 0


Query: 75  PPPKASIFSSIWRVKIPKKVKFFAWEVLHGRVNTQDQIQRFSSFVLWPQWCVLSRSQEED 134
           PP KA I + IW++K   K+K F W++L G + T D ++R       PQ C     ++E 
Sbjct: 8   PPGKAEIKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKR-RHIRNHPQ-CHRCCQEDET 67

Query: 135 LDHLLWDFPFVYSIW------SQFFKVFGVASARNIDCFSMFEEILWHPPFRDKGRVIWQ 194
             HL +D  +   +W       Q  +  G+     ++   +    L +   +     IW 
Sbjct: 68  SQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMEL--LLSSCLANRQPQLFNLAIW- 127

Query: 195 ACFFAILWDVWLERNSRIFRGVEKSTNELWEMIRFNSSLW 229
                ILW +W  RN  +F+    S     +  R +   W
Sbjct: 128 -----ILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEW 157

[Close]

BLAST of Lcy08g016170 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 28/103 (27.18%), Postives = 46/103 (44.66%), Query Frame = 0


Query: 108 TQDQIQRFSSFVLW----PQWCVLSRSQEEDLDHLLWDFPFVYSIWSQFFKVFGVASARN 167
           T++++     F+ W    P  C+L  + +E   H+ +D PF + +WS F     V   R 
Sbjct: 263 TRNRLHICDRFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVTPPR- 322

Query: 168 IDCFSMFEEILWHPPFRDKGRVIWQACFFAILWDVWLERNSRI 207
              F      L HP    K   I +  + A ++ +W ERN R+
Sbjct: 323 --MFKDSARWLRHPCRDKKVAFILKLAYQASVYHIWRERNIRL 362

The following BLAST results are available for this feature:

BLAST of Lcy08g016170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	4.2e-08	27.33	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lcy08g016170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438K969	1.8e-33	34.69	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE...	[more]
A0A438J1R4	1.8e-33	35.48	Actin-related protein 7 OS=Vitis vinifera OX=29760 GN=ARP7_3 PE=4 SV=1	[more]
A0A438KG54	2.3e-33	35.22	Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1	[more]
A5BQI4	6.7e-33	35.08	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438C911	6.7e-33	33.87	Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=...	[more]

BLAST of Lcy08g016170 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX17758.1	3.6e-33	34.69	putative ribonuclease H protein [Vitis vinifera]	[more]
RVX02903.1	3.6e-33	35.48	Actin-related protein 7 [Vitis vinifera]	[more]
RVX20160.1	4.8e-33	35.22	Protein RETICULATA, chloroplastic [Vitis vinifera]	[more]
RVW19678.1	1.4e-32	33.87	Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]	[more]
CAN70431.1	1.4e-32	35.08	hypothetical protein VITISV_030910 [Vitis vinifera]	[more]

BLAST of Lcy08g016170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04650.1	3.0e-09	25.56	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G43730.1	3.3e-08	26.04	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT3G25270.1	4.3e-08	25.00	Ribonuclease H-like superfamily protein	[more]
AT1G45063.1	1.5e-05	27.18	copper ion binding;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 61..149 e-value: 8.8E-13 score: 48.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g016170.1	Lcy08g016170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding