Lcy08g015090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g015090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L27-like
Location	Chr08: 45446327 .. 45448638 (+)
RNA-Seq Expression	Lcy08g015090
Synteny	Lcy08g015090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCCGTTTAAGCAGCTGAGTGTCGCCGCCGCCCGTTCTCTGCTGCTGCCGGCGCCGTCGTCTTTCTTCCGCTCGTACCGCCGCTACCAGTATTTCTTCCATTCGTGCTGCCCCCGCATTCCTCCTAGCAGTTTTGCTCTGATTTTCTACTCCCCTTGTTGTCACTGGTATTCTCCCAATCTCGATCTATGTCTTCATTTCTCACTTGAAAAACACAAATTATAACTTCTCTAATGAAAGAATTGAGGCATTGTTTGATTTTTTTTAAAAAAAATTAATAACAATAGCCGAGTAGCAATGAAGAAAGCAGCCTTGCGGTAAATTGGGACGTGGTTTGTGTTTGGCTGTTCTGATTCGGACATGAATTTTTCGGAAAATTGAAAGTCTCTTCCTCAAATAACCAGTACAATAACCCATGATACTTTGAATTTATGGAAATAAGAGCATGAATCCAGATATATCTTCTATTGGAATATGAATCCATCACGGTGGGAAGTTGAAATCTGACTGAAAACATGAGTCCAGAGACTCCAGACATATTTTTCCATTATTTATTAGGAGTAATCGCTCAATGAAGATAATGAACCCATTACTCTGTTCTGTGAATGTAAATTATTTTTCTTGAGTAATGTAATATTCAACTACTTAATTTCAGAGATCAAGACAAAGGGTACACAATTTACAATGAAGGTGTGCCTTTTGTATGTAAATTGGTATATGCTCTTCAAGTGCTTGGTTCAAGCATTTGAATGAAAATCTTTTTTGTGCCTCCATTTTGGTATGAAATATCCATGCTTGTTTCTTGATTTTGTGTTGTTAACTATGAAGAGTTTAAAAGATGCAGCAACCTTCTGAAAAACTTGTTGCAGGTTTGTTGCAAAGTGCTTTCTAAGATGTAAATAGTAGGCTTATTTGTGGAATATGTTCATTTGAGCTTGTTGAACAAGATTATGTTATATTTGGTAGACTTATTACTGGAATTTGCTCATGTGTACTTGTCGAACCAGACTGTTTTACATGTTAGGTGTCTTTCGACATATTTCCAGGATAGGCTGCACTGAATATAATCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGAATGGTTCATCTAGAACAAGTTGTGCTTGTGTCATGCTACTTGTCTGCATATTTGATGATTACAATGGTTGTTTAATTGAGTCTCAGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGGTGAGTGCAAGACAAGAATTGAATCACATTATCATAAACTAGAACTGAAATTTCTGTTGATTGAAACTGTCTTGTTGTGAACTTTTCACGTTCTTCTCGATAAAGAGAGTTATTCCTGGTAACATTATCATTCGTCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGAAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACAACGGCATGATATCAAACTCTCGTTCCTTATCAAGTGTTTGAATTCGTTGATGAACACGAAAATGGATGGTAGTAAATTTTCCTGTAGTTTTTCATGGTCTATAGCAAATTCTGACTGAACTTAATCACTTGGTGGAGGGCGTGTAGGCTGGCTCTTTGAATACATGTTTTTAACGTTGATCAAGCAGGTTCATACTATTCCACTTCAGCTAAGCCAATGACGAAACAGTATCCAGATTTGTCTATAGATGAAGATAATATCCTTTAAGTAGGGGTGCACCGGACTGTGACGAATAATAGGTACCTCTGAATTCAAAGTCCTCTTTCAACCTGTTTCACAACCTGGAAATTTTTATATAGGGACATTTTCTTAATTGACATACCAATACGTAATTGCCTGAGAATATGCATCAGCTCCAGACAGCAGTTAATTGGTTGTGTTGTGGGCACTAAGTTGTTAAATTTGCTTTGAAATTTTTGTGTTTGTGGTTTATTCATGGAATGCTTTGTGATAGATCCACTGCTTAATCATGAGCATTAGTCATTAATTACTTATTA

mRNA sequence

CTCCTCCGTTTAAGCAGCTGAGTGTCGCCGCCGCCCGTTCTCTGCTGCTGCCGGCGCCGTCGTCTTTCTTCCGCTCGTACCGCCGCTACCAGTATTTCTTCCATTCGTGCTGCCCCCGCATTCCTCCTAGCAGTTTTGCTCTGATTTTCTACTCCCCTTGTTGTCACTGGATAGGCTGCACTGAATATAATCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGAAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACAACGGCATGATATCAAACTCTCGTTCCTTATCAAGTGTTTGAATTCGTTGATGAACACGAAAATGGATGGTAGTAAATTTTCCTGTAGTTTTTCATGGTCTATAGCAAATTCTGACTGAACTTAATCACTTGGTGGAGGGCGTGTAGGCTGGCTCTTTGAATACATGTTTTTAACGTTGATCAAGCAGGTTCATACTATTCCACTTCAGCTAAGCCAATGACGAAACAGTATCCAGATTTGTCTATAGATGAAGATAATATCCTTTAAGTAGGGGTGCACCGGACTGTGACGAATAATAGGTACCTCTGAATTCAAAGTCCTCTTTCAACCTGTTTCACAACCTGGAAATTTTTATATAGGGACATTTTCTTAATTGACATACCAATACGTAATTGCCTGAGAATATGCATCAGCTCCAGACAGCAGTTAATTGGTTGTGTTGTGGGCACTAAGTTGTTAAATTTGCTTTGAAATTTTTGTGTTTGTGGTTTATTCATGGAATGCTTTGTGATAGATCCACTGCTTAATCATGAGCATTAGTCATTAATTACTTATTA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGAAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACAACGGCATGA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA

Homology

[Close]

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVP 126
           L EG V F++ K   R +V ++P
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-25
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVP 126
           L +G V F++ K + R +V ++P
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-25
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIV 125
           LK+G V+F+      RK+V IV
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot
Match: Q6G0T7 (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIV 125
           L  G V F++ K + R +V +V
Sbjct: 62  LSNGVVSFQR-KANNRSYVSVV 82

[Close]

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot
Match: Q48NL3 (50S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-24
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VG+GKDHTLFA
Sbjct: 2   AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVPK 127
             EG +KF+     GR++V IVPK
Sbjct: 62  KVEGVIKFQVKGAFGRRYVSIVPK 85

[Close]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.8e-76
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKT 147
           VHI+PKEGHVLHPVYATT  SPELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.5e-76
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYATT  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL
Match: A0A6J1DS22 (uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023867 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIAT FCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALKEGC+KFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PKEGHVLHPVYA  ST+ ELKTT
Sbjct: 121 VHVIPKEGHVLHPVYA--STASELKTT 145

[Close]

BLAST of Lcy08g015090 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76
Identity = 140/148 (94.59%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VH++PKEGHVLHP+YATTSTSPELKTTT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 148

[Close]

BLAST of Lcy08g015090 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 7.9e-76
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKT 147
           VHI+PKEGHVLHPVYATT  SPELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of Lcy08g015090 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYATT  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of Lcy08g015090 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 3.9e-75
Identity = 139/147 (94.56%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Lcy08g015090 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 5.1e-75
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYA+T  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYASTDISPELKTAT 148

[Close]

BLAST of Lcy08g015090 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-57
Identity = 106/151 (70.20%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVY--ATTSTSPELKTTT 149
           W+H+ P  GHVLHP+Y  A  + S +LKT +
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]

BLAST of Lcy08g015090 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTTTA 151
           W+H+ P  GHVLHP+Y   + +   K  T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of Lcy08g015090 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTTTA 151
           W+H+ P  GHVLHP+Y   + +   K  T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of Lcy08g015090 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTTTA 151
           W+H+ P  GHVLHP+Y   + +   K  T +
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of Lcy08g015090 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVKFEKHKLSGRKWVHIVPKE 128
           L +G VKFEK     RK + + P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of Lcy08g015090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9IM57	1.7e-25	68.67	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
Q6G507	2.3e-25	67.47	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
B4RZH4	6.6e-25	69.51	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q6G0T7	1.9e-24	67.07	50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=...	[more]
Q48NL3	3.3e-24	64.29	50S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 144...	[more]

BLAST of Lcy08g015090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I390	3.8e-76	96.58	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A6J1HP14	8.5e-76	95.27	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]
A0A5A7TXR2	1.9e-75	94.56	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	1.9e-75	94.56	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A6J1DS22	1.0e-73	93.88	uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Lcy08g015090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877023.1	3.5e-76	94.59	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_022970580.1	7.9e-76	96.58	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_022964702.1	1.8e-75	95.27	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
XP_016901663.1	3.9e-75	94.56	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]
KAG6583414.1	5.1e-75	94.59	hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy08g015090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	1.0e-57	70.20	Ribosomal protein L27 family protein	[more]
AT2G16930.2	1.9e-56	67.55	Ribosomal protein L27 family protein	[more]
AT2G16930.1	1.9e-56	67.55	Ribosomal protein L27 family protein	[more]
AT2G16930.3	1.9e-56	67.55	Ribosomal protein L27 family protein	[more]
AT5G40950.1	1.0e-20	60.00	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 70..94 score: 57.38 coord: 95..119 score: 47.08 coord: 45..69 score: 63.85
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..124 e-value: 3.2E-35 score: 118.0
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..122 e-value: 3.3E-37 score: 126.4
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 2..148
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 25.848251
None	No IPR available	GENE3D	2.40.50.100		coord: 47..146 e-value: 1.1E-32 score: 114.3
None	No IPR available	PANTHER	PTHR15893:SF9	50S RIBOSOMAL PROTEIN L27-LIKE	coord: 2..148
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 43..124
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g015090.1	Lcy08g015090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome