Lcy08g014110 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g014110
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein NIM1-INTERACTING 3-like
LocationChr08: 44324177 .. 44324851 (+)
RNA-Seq ExpressionLcy08g014110
SyntenyLcy08g014110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTCCCACCATTGGAGCAGAGCCATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAACATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAAACATGAAGCTGTTCTTTGCTCTGATTCAAAACACCAAAGCCATGAGAGACAGAATCATCAAATCCAAAGACTCAGCACAAGAAGAGAAATCCAAAGGGATTTGGAATCCAAAGTTCCAACCAGAAGATTTCATGGAAGAAGATGGCTATGGCAGCAGCAACAACAACAAATCCAACACAACCCTTCAGCTTGCAGCTTCTTCATCATCAACACCAAAACAGAGCAACCCAAAGGATGAACAACAAGATAAAGACAAGGTTGGAGAAACAAATAAAGGGCTTGATCTCAATCTCTCTCTTTGAGTTTATTTGGGTTTTTTTGTGTGTAATCAACAGTGTTTGATGATGGGTTGCTTTTGGATTTTCATGATTCAATTTAAAAGCTCCTCATCTCAGCCATTTTTGTTTGTGCTTTTGAGATTGCTCTGTTTTTTGGGACTCTGTTTCTGTTGAGCATTTGAAGATGTTTTCTTTGATTGTTTTGAGAAAAAAAATGGAAGTTGAAGATAAGGGTCATTGTGAAAATGAAAATTTGTTTTGGTTTGAGCCCTTCTCATTTTTGTTGTCAC

mRNA sequence

CATTTCCCACCATTGGAGCAGAGCCATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAACATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAAACATGAAGCTGTTCTTTGCTCTGATTCAAAACACCAAAGCCATGAGAGACAGAATCATCAAATCCAAAGACTCAGCACAAGAAGAGAAATCCAAAGGGATTTGGAATCCAAAGTTCCAACCAGAAGATTTCATGGAAGAAGATGGCTATGGCAGCAGCAACAACAACAAATCCAACACAACCCTTCAGCTTGCAGCTTCTTCATCATCAACACCAAAACAGAGCAACCCAAAGGATGAACAACAAGATAAAGACAAGGTTGGAGAAACAAATAAAGGGCTTGATCTCAATCTCTCTCTTTGAGTTTATTTGGGTTTTTTTGTGTGTAATCAACAGTGTTTGATGATGGGTTGCTTTTGGATTTTCATGATTCAATTTAAAAGCTCCTCATCTCAGCCATTTTTGTTTGTGCTTTTGAGATTGCTCTGTTTTTTGGGACTCTGTTTCTGTTGAGCATTTGAAGATGTTTTCTTTGATTGTTTTGAGAAAAAAAATGGAAGTTGAAGATAAGGGTCATTGTGAAAATGAAAATTTGTTTTGGTTTGAGCCCTTCTCATTTTTGTTGTCAC

Coding sequence (CDS)

ATGGAAGGAGGAAGAAAAAGAAGAAAATTGCAGAACATTGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAAACATGAAGCTGTTCTTTGCTCTGATTCAAAACACCAAAGCCATGAGAGACAGAATCATCAAATCCAAAGACTCAGCACAAGAAGAGAAATCCAAAGGGATTTGGAATCCAAAGTTCCAACCAGAAGATTTCATGGAAGAAGATGGCTATGGCAGCAGCAACAACAACAAATCCAACACAACCCTTCAGCTTGCAGCTTCTTCATCATCAACACCAAAACAGAGCAACCCAAAGGATGAACAACAAGATAAAGACAAGGTTGGAGAAACAAATAAAGGGCTTGATCTCAATCTCTCTCTTTGA

Protein sequence

MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKGIWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQDKDKVGETNKGLDLNLSL
Homology
BLAST of Lcy08g014110 vs. ExPASy TrEMBL
Match: A0A0A0LJ23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.1e-27
Identity = 84/130 (64.62%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME GRKRRKLQ       EEE+EEE+E M+LF+ALIQNTKAMRD +  SK+  +EEKSKG
Sbjct: 1   MESGRKRRKLQ-------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSN-TTLQLAASSSSTPKQSNPKDEQQDKD--KVGET 120
           +WNPKFQPEDF EEDGY  + NNKSN   LQL+A+SSST KQ N K +Q++    KV E 
Sbjct: 61  VWNPKFQPEDFNEEDGY--NYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEV 120

Query: 121 NKGLDLNLSL 128
            KGLDLNLSL
Sbjct: 121 KKGLDLNLSL 121

BLAST of Lcy08g014110 vs. ExPASy TrEMBL
Match: A0A6J1DQG7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia OX=3673 GN=LOC111023284 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 72/127 (56.69%), Postives = 97/127 (76.38%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME  R++RKLQ+ +E+E ++EDEEEEE MKLFFALIQNTK++RDR+   + + Q++KSKG
Sbjct: 1   MESVRRKRKLQD-DEKEAQKEDEEEEEKMKLFFALIQNTKSIRDRVKSKQSAPQQDKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQDKDKVGETNKG 120
           +WNPKFQPEDF+E+       + KSN T Q AA SSST +++  ++E+Q KDKV E  + 
Sbjct: 61  VWNPKFQPEDFIED------CDKKSNPTPQFAA-SSSTKQRNKQEEEEQGKDKV-EGIED 118

Query: 121 LDLNLSL 128
           LDLNLSL
Sbjct: 121 LDLNLSL 118

BLAST of Lcy08g014110 vs. ExPASy TrEMBL
Match: A0A061F4Z3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 0

Query: 1   MEGGRKRRKLQN------IEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQ 60
           ME GRK+RK+ N       EEEEEE+++EEEEE ++ FFALI++T+ MRDR+    + ++
Sbjct: 1   MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRSTREMRDRLRNVPNGSK 60

Query: 61  EEKSK---------GIWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPK 120
           EE+ +          +WNPKFQPEDFME+           +    L A + + P  SN +
Sbjct: 61  EEEERKKQEEKQVAAVWNPKFQPEDFMED-----------SKPKNLLAVNEAGP-SSNRE 120

Query: 121 DEQQDKDKVGETNKGLDLNLSL 128
            EQ    K G  + GLDL LSL
Sbjct: 121 QEQGQDTKEGGEDGGLDLKLSL 130

BLAST of Lcy08g014110 vs. ExPASy TrEMBL
Match: A0A4S4D4V2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_028392 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           M+G  ++RK++N       EED+++EE M+ FFALI++T+  R R++   D  QE + KG
Sbjct: 1   MDGESRKRKMEN-------EEDDDDEEKMQKFFALIRSTRDARKRVMSGADKLQEAEKKG 60

Query: 61  -----IWNPKFQPEDFMEEDGYGS-SNNNKSNTTLQLAASSSSTPKQSNPKDEQQDKDKV 120
                 WNP FQPEDFME  G  S S   +++  L LA + +   K+   + ++Q++D  
Sbjct: 61  GKPAEAWNPSFQPEDFMEGGGDPSKSPPPQASLALALALAIAGPSKREEDEAKEQEQDHK 120

Query: 121 GETNKGLDLNLSL 128
           G  N GLDL LSL
Sbjct: 121 GGDNDGLDLKLSL 126

BLAST of Lcy08g014110 vs. ExPASy TrEMBL
Match: A0A6P4N9F3 (uncharacterized protein LOC108462992 OS=Gossypium arboreum OX=29729 GN=LOC108462992 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKS----------- 60
           ME GRK+RK+ N EE+++E+ED++EEE ++ FFALI++T+ MRDR+  +           
Sbjct: 1   MEDGRKKRKMGNEEEKDDEDEDDDEEEKVEKFFALIRSTREMRDRLRNAAVPNGPKEEEY 60

Query: 61  KDSAQEEKS-------KGIWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQS 120
           +   QE+K+        G WNP FQ EDFME    GS + +++N+     A  SS+  Q 
Sbjct: 61  QKKKQEDKAVVVGGGGVGQWNPTFQAEDFME----GSISRSENNSLGLNVAGPSSSKVQR 120

Query: 121 NPKDEQQDKDKVGETNKGLDLNLSL 128
            P+   +D D  GE   GLDL LSL
Sbjct: 121 EPEKGTED-DGGGEGGGGLDLKLSL 140

BLAST of Lcy08g014110 vs. NCBI nr
Match: KAG6599168.1 (hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 7.5e-27
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIE-----EEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQE 60
           MEGGRKRRKLQNIE     EEE+E+EDE+EEE MKLFFALIQNTKAMRD+ IKSK+SA+E
Sbjct: 1   MEGGRKRRKLQNIEEDDDDEEEDEDEDEDEEEKMKLFFALIQNTKAMRDK-IKSKESAEE 60

Query: 61  EK-SKGIWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQD---- 120
           +  +KG+WNPKFQPEDF+ EDG+  ++ +KS   ++L A+SSS  KQSN K+E Q+    
Sbjct: 61  DNPTKGVWNPKFQPEDFI-EDGF-DTHKSKSKAAIELGAASSSATKQSNQKEEHQEHQEH 120

Query: 121 ------KDKVGETNKGLDLNLSL 128
                 ++++ E  KGLDLNLSL
Sbjct: 121 QEHQEHQEQLEEPKKGLDLNLSL 140

BLAST of Lcy08g014110 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_021295 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-26
Identity = 84/130 (64.62%), Postives = 98/130 (75.38%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME GRKRRKLQ       EEE+EEE+E M+LF+ALIQNTKAMRD +  SK+  +EEKSKG
Sbjct: 1   MESGRKRRKLQ-------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSN-TTLQLAASSSSTPKQSNPKDEQQDKD--KVGET 120
           +WNPKFQPEDF EEDGY  + NNKSN   LQL+A+SSST KQ N K +Q++    KV E 
Sbjct: 61  VWNPKFQPEDFNEEDGY--NYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEV 120

Query: 121 NKGLDLNLSL 128
            KGLDLNLSL
Sbjct: 121 KKGLDLNLSL 121

BLAST of Lcy08g014110 vs. NCBI nr
Match: XP_038889660.1 (protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25
Identity = 83/118 (70.34%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME GRKRRKL     EEEEEED++EE  MKL FALIQN KAMR R +KSK+S +EEKSKG
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGEMKLVFALIQNIKAMRGR-MKSKESPEEEKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPK---DEQQDKDKVG 116
           +WNPKFQPEDF+ EDGY    NNKSN TLQL A+SSST K SNPK    EQQDK KVG
Sbjct: 61  VWNPKFQPEDFI-EDGY---YNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHKVG 108

BLAST of Lcy08g014110 vs. NCBI nr
Match: XP_038889662.1 (protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME GRKRRKL     EEEEEED++EE  MKL FALIQN KAMR R +KSK+S +EEKSKG
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGEMKLVFALIQNIKAMRGR-MKSKESPEEEKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQDKDKVGETN 119
           +WNPKFQPEDF+ EDGY    NNKSN TLQL A+SSST K SNPK EQQ++    +T+
Sbjct: 61  VWNPKFQPEDFI-EDGY---YNNKSNITLQLPAASSSTTKHSNPKKEQQEQQDKHKTS 108

BLAST of Lcy08g014110 vs. NCBI nr
Match: XP_038889661.1 (protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRIIKSKDSAQEEKSKG 60
           ME GRKRRKL     EEEEEED++EE  MKL FALIQN KAMR R +KSK+S +EEKSKG
Sbjct: 1   MERGRKRRKL-----EEEEEEDDDEEGEMKLVFALIQNIKAMRGR-MKSKESPEEEKSKG 60

Query: 61  IWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQDK 112
           +WNPKFQPEDF+ EDGY    NNKSN TLQL A+SSST K SNPK EQQ++
Sbjct: 61  VWNPKFQPEDFI-EDGY---YNNKSNITLQLPAASSSTTKHSNPKKEQQEQ 101

BLAST of Lcy08g014110 vs. TAIR 10
Match: AT1G09415.1 (NIM1-interacting 3 )

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-05
Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 0

Query: 1   MEGGRKRRKLQNIEEEEEEEEDEEEEENMKLFFALIQNTKAMRDRI---IKSKDSAQEEK 60
           M+  RKR K+         E++++EEE M+  + +++N + MR  +   ++ K   +EE+
Sbjct: 1   MDRDRKRVKM---------EKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEER 60

Query: 61  SKGIWNPKFQPEDFMEEDGYGSSNNNKSNTTLQLAASSSSTPKQSNPKDEQQDKDKVGET 120
           ++    P FQPEDF+        N  ++N   + A  SSS    SN  D  ++K +  ET
Sbjct: 61  ARVRRFPSFQPEDFI------FMNKAEANNIEKAANESSSA---SNEYDGSKEKQEGSET 112

Query: 121 NKGLDLNLSL 128
           N  LDLNLSL
Sbjct: 121 NVCLDLNLSL 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ238.1e-2764.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1[more]
A0A6J1DQG71.5e-2056.69LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia... [more]
A0A061F4Z31.4e-1041.55Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026807 PE=3 SV=1[more]
A0A4S4D4V25.3e-1039.85Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0283... [more]
A0A6P4N9F32.6e-0940.69uncharacterized protein LOC108462992 OS=Gossypium arboreum OX=29729 GN=LOC108462... [more]
Match NameE-valueIdentityDescription
KAG6599168.17.5e-2760.14hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61024.11.7e-2664.62hypothetical protein Csa_021295 [Cucumis sativus][more]
XP_038889660.19.2e-2570.34protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida][more]
XP_038889662.17.8e-2466.95protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida][more]
XP_038889661.17.8e-2470.27protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G09415.18.6e-0533.08NIM1-interacting 3 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..127
NoneNo IPR availablePANTHERPTHR33669:SF4PROTEIN NIM1-INTERACTING 3coord: 5..127
IPR031425NPR1/NH1-interacting proteinPFAMPF15699NPR1_interactcoord: 21..124
e-value: 3.2E-18
score: 66.4
IPR031425NPR1/NH1-interacting proteinPANTHERPTHR33669PROTEIN NEGATIVE REGULATOR OF RESISTANCEcoord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g014110.1Lcy08g014110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance