Lcy08g013580 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g013580
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionAutophagy-related protein 3
LocationChr08: 43588408 .. 43588617 (+)
RNA-Seq ExpressionLcy08g013580
SyntenyLcy08g013580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCCCCATGCGATGCTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAAAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

mRNA sequence

ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCCCCATGCGATGCTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAAAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

Coding sequence (CDS)

ATGGATGCTAAAACGGAAAAATCTAGGGCTGTGACGAATAATCTATCCCCATGCGATGCTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATTAAGTGCGAGTCTCAAATACAGGCCTTCAAAAAGTCTTCTTGCTCCCTAAAGAAACCTAATCCTTCTTCGCAATCTGGAAGGGACGACCTCGAGACTGCCGTTTGA

Protein sequence

MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQSGRDDLETAV
Homology
BLAST of Lcy08g013580 vs. ExPASy TrEMBL
Match: A0A0A0L2G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD  TEKSRAVT N SPCD EAL+KCLQENNGDR+KCESQIQAF   SCSLKK NPS QS
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAF-MFSCSLKKSNPSLQS 60

Query: 61 GRDDLETAV 70
          GR+D +T V
Sbjct: 61 GRNDFDTGV 68

BLAST of Lcy08g013580 vs. ExPASy TrEMBL
Match: A0A6A4N3Q2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSS 59
          MD K E++++V   +S CD +AL+KCL++N GD +KC+SQI+AF KSSCSLKKPNPSS
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAF-KSSCSLKKPNPSS 57

BLAST of Lcy08g013580 vs. ExPASy TrEMBL
Match: A0A5N6RFC3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD + E S +    +SPCD EAL+KCL+ENNGD +KC+SQI+AF KSSCSLKKPN SSQ 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAF-KSSCSLKKPN-SSQE 60

Query: 61 GRDDLET 68
              L+T
Sbjct: 61 SEPQLKT 64

BLAST of Lcy08g013580 vs. ExPASy TrEMBL
Match: A0A5N6RHF1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD + E S +    +SPCD EAL+KCL+ENNGD +KC+SQI+AF KSSCSLKKPN SSQ 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAF-KSSCSLKKPN-SSQE 60

Query: 61 GRDDLET 68
              L+T
Sbjct: 61 SEPQLKT 64

BLAST of Lcy08g013580 vs. ExPASy TrEMBL
Match: B9RIW7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPS 58
          MD K E S A    LSPCD EAL+KCL+EN GD +KC+SQI+AF KSSCSLKKP PS
Sbjct: 1  MDEKGESSSA-KKVLSPCDVEALKKCLEENKGDYVKCQSQIEAF-KSSCSLKKPTPS 55

BLAST of Lcy08g013580 vs. NCBI nr
Match: KAE8650146.1 (hypothetical protein Csa_010997, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-18
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD  TEKSRAVT N SPCD EAL+KCLQENNGDR+KCESQIQAF   SCSLKK NPS QS
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAF-MFSCSLKKSNPSLQS 60

Query: 61 GRDDLET 68
          GR+D +T
Sbjct: 61 GRNDFDT 66

BLAST of Lcy08g013580 vs. NCBI nr
Match: KAF3954648.1 (hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical protein CMV_000104 [Castanea mollissima])

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-11
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD K E S  V   +SPCD EAL+KCL+EN GD +KC+SQI+AF KSSCS+KKPNPS +S
Sbjct: 1  MDQKAE-SNTVKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAF-KSSCSIKKPNPSQES 58

BLAST of Lcy08g013580 vs. NCBI nr
Match: KAE9589066.1 (hypothetical protein Lalb_Chr21g0305111 [Lupinus albus])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSS 59
          MD K E++++V   +S CD +AL+KCL++N GD +KC+SQI+AF KSSCSLKKPNPSS
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAF-KSSCSLKKPNPSS 57

BLAST of Lcy08g013580 vs. NCBI nr
Match: KAE8077725.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-10
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD + E S +    +SPCD EAL+KCL+ENNGD +KC+SQI+AF KSSCSLKKPN SSQ 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAF-KSSCSLKKPN-SSQE 60

Query: 61 GRDDLET 68
              L+T
Sbjct: 61 SEPQLKT 64

BLAST of Lcy08g013580 vs. NCBI nr
Match: KAE8077726.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 74.7 bits (182), Expect = 3.5e-10
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDAKTEKSRAVTNNLSPCDAEALRKCLQENNGDRIKCESQIQAFKKSSCSLKKPNPSSQS 60
          MD + E S +    +SPCD EAL+KCL+ENNGD +KC+SQI+AF KSSCSLKKPN SSQ 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAF-KSSCSLKKPN-SSQE 60

Query: 61 GRDDLET 68
              L+T
Sbjct: 61 SEPQLKT 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2G85.7e-1976.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1[more]
A0A6A4N3Q25.8e-1162.07Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1[more]
A0A5N6RFC31.7e-1061.19Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1[more]
A0A5N6RHF11.7e-1061.19Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1[more]
B9RIW76.4e-1068.42Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8650146.14.5e-1877.61hypothetical protein Csa_010997, partial [Cucumis sativus][more]
KAF3954648.19.1e-1165.00hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical... [more]
KAE9589066.11.2e-1062.07hypothetical protein Lalb_Chr21g0305111 [Lupinus albus][more]
KAE8077725.13.5e-1061.19hypothetical protein FH972_016259 [Carpinus fangiana][more]
KAE8077726.13.5e-1061.19hypothetical protein FH972_016259 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..69
NoneNo IPR availablePANTHERPTHR36856:SF1OS07G0175200 PROTEINcoord: 1..67
NoneNo IPR availablePANTHERPTHR36856OS07G0175200 PROTEINcoord: 1..67
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 14..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g013580.1Lcy08g013580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity