Lcy08g012920 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g012920
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr08: 42352043 .. 42353980 (-)
RNA-Seq ExpressionLcy08g012920
SyntenyLcy08g012920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCAAAGACAGGTGGTTAAGATTGGTAGAAAATTCAATGGAAGCATTGGAGAGGATCTGTGTGGGAGCCTGGGCAATTTGGAACGACAGGAATAATATAATTCACCAGCGCCAGGTTCCTAGCCCATTAGTTAGATGTGAATGGATTAATGATTACCTGTTAGAGTTCTTGAAGGCCAATCCGAAAACCATGACTCCTCAGACAAAGGAGGACGTTGGAAATATAATCTCTGAGGGAGAATACTTGATTATGCATACAGATGCATCTGTTATGGGAGGGCAAAGTACATGCGGTATGGGGATTGTGCTGCGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAGTGCTTGTACTAGGGCGTATGCAACTCCTTTGGAAGCAGAAGCATTGGCGGTGCTTGAAGGGATGCGTTTGGCTATGTTGTTAAATGTTAAGCGCCTGACAGTCTTGTCGGATTCATTGACTGTGATAAATTCAATAAACGACAAGATACAGGTGGAGTCCTCTATTGTGACGACGTTGTGGGACATCAAAGAAATCCATAAGCTTTTTGATTGTATAACTTTCCATTTTACAAGTCACAAAATTAATGGCTTTGCTCATAGAGTGGCCCGAATGGGTTTATTTACATCACCACTGTAACGCCCCAGGCCCAGGATTCGGAATTCGGATTTGGCACCTAAGGCCCCGCTATTCCCCTGCGACCTGGCCACGTCACCATACTTGTCTGATACTACTTCTAAGATTGAAGATTGTCCCCACAAACCAACACGGGGTCCTTTTAGCATGTTTTGTCCTCACTCACATACTTCCTAGGAAAATTCCCAGGAGGTCACCCAACATAGAACTTTTCCAAGCCAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTCTCTAGGCCATACTTTCATGTCCTCAGGATCCCTCTCATTCGGATGTGATCTCGGTTCATTCATGTACCCCTCCTAACTTCGGGTGTCACATGCCCACCAGCTTCCGCCTTGGTTCGTCCCCGAACCACATCCTACTGGGAGAGGTTCCGCTCTGATACCATCTGTAACGCCCCAGGCCCAGGATTTGGAATTCGGATTTGGCACCTAAGGCCCCGCTATTCCCCTGCGACCTGGCCACGTCACCATACTTGTCTGATACTACTTCTAAGATTGAAGATTGTCCCCACAAACCAACACGGGGTCCTTTTAGCATGCTTTGTCCTCACTCACATGCTTCCTAGGAAAATTCCCAGGAGGTCACCCAACATAGAACTTCTCCAAACCAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTCTCTAGGCCATACTTTCATGTCCTCAGGATCCCTCTCATTCGGATGTGATCTCGGTTCATTCATGTATCCCTCCTAACTTCGGGTGTCACAACCACAATTGTGGTTAGGGGACTATCTTGAGTGGATGGTTGGATTGTTGCTCAAGGAGCGATGCTTATTTGTATCCCTTGGGGATTCTTTTCTGTGTTGAATGAAATTTCTTTACTATAAAAAAAAAAAAAAAAAAAAAAAAGGTACACGATTTAGTCGTCCACTATACCCTACCTCATCCTTCCTTTTCTCCCTCGCGCCGACAGACCTCGCCTTCCTCAGGTTTTTTTTTTCTTCCTACATAATAACTTTGTTCAAGACAACATTTTTCTATGGAACAAAATATACCACAGTTAGGTTTTATGTGTGAGCAATACGTCATAAATATAACTGACATCATTCAACAAACTTGGAGGCTAATCGTTGCTGACACTGATAAGACGTGTGCTTGTCGCAGACGTCGTTGA

mRNA sequence

ATGGATATCAAAGACAGGTGGTTAAGATTGGTAGAAAATTCAATGGAAGCATTGGAGAGGATCTGTGTGGGAGCCTGGGCAATTTGGAACGACAGGAATAATATAATTCACCAGCGCCAGGTTCCTAGCCCATTAGTTAGATGTGAATGGATTAATGATTACCTGTTAGAGTTCTTGAAGGCCAATCCGAAAACCATGACTCCTCAGACAAAGGAGGACGTTGGAAATATAATCTCTGAGGGAGAATACTTGATTATGCATACAGATGCATCTGTTATGGGAGGGCAAAGTACATGCGGTATGGGGATTGTGCTGCGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAGTGCTTGTACTAGGGCGTATGCAACTCCTTTGGAAGCAGAAGCATTGGCGGTGCTTGAAGGGATGCGTTTGGCTATGTTGTTAAATGTTAAGCGCCTGACAGTCTTGTCGGATTCATTGACTGTGATAAATTCAATAAACGACAAGATACAGTTAGGTTTTATGTGTGAGCAATACGTCATAAATATAACTGACATCATTCAACAAACTTGGAGGCTAATCGTTGCTGACACTGATAAGACGTGTGCTTGTCGCAGACGTCGTTGA

Coding sequence (CDS)

ATGGATATCAAAGACAGGTGGTTAAGATTGGTAGAAAATTCAATGGAAGCATTGGAGAGGATCTGTGTGGGAGCCTGGGCAATTTGGAACGACAGGAATAATATAATTCACCAGCGCCAGGTTCCTAGCCCATTAGTTAGATGTGAATGGATTAATGATTACCTGTTAGAGTTCTTGAAGGCCAATCCGAAAACCATGACTCCTCAGACAAAGGAGGACGTTGGAAATATAATCTCTGAGGGAGAATACTTGATTATGCATACAGATGCATCTGTTATGGGAGGGCAAAGTACATGCGGTATGGGGATTGTGCTGCGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAGTGCTTGTACTAGGGCGTATGCAACTCCTTTGGAAGCAGAAGCATTGGCGGTGCTTGAAGGGATGCGTTTGGCTATGTTGTTAAATGTTAAGCGCCTGACAGTCTTGTCGGATTCATTGACTGTGATAAATTCAATAAACGACAAGATACAGTTAGGTTTTATGTGTGAGCAATACGTCATAAATATAACTGACATCATTCAACAAACTTGGAGGCTAATCGTTGCTGACACTGATAAGACGTGTGCTTGTCGCAGACGTCGTTGA

Protein sequence

MDIKDRWLRLVENSMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKTMTPQTKEDVGNIISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYATPLEAEALAVLEGMRLAMLLNVKRLTVLSDSLTVINSINDKIQLGFMCEQYVINITDIIQQTWRLIVADTDKTCACRRRR
Homology
BLAST of Lcy08g012920 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-12
Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = 0

Query: 7    WLRLVEN-SMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKT 66
            W  L E    + L    +  W IWNDRN++IH +QV     +CEW+  +L    +A    
Sbjct: 1219 WSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN 1278

Query: 67   MTPQTKEDVGNII-----SEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACT 126
             +P+T+ +   ++     S    L ++TDA+  G  ++   G ++RD   +L A  S   
Sbjct: 1279 YSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGASTS--FGCIIRDSSCSLVAATSIRV 1338

Query: 127  RAYATPLEAEALAVLEGMRLAMLLNVKRLTVLSDSLTVINSINDKI 167
                +PL AE   +LEG++ A   N   L V SDSL  I  I ++I
Sbjct: 1339 PFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEI 1382

BLAST of Lcy08g012920 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = 0

Query: 23  VGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEF---LKANPKTMTPQTKE---DVGN 82
           +  WA+WNDR+ +I+++++P  L++ EWI  Y  E         K   P+  E    +G 
Sbjct: 14  ITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVNEWRPPLGG 73

Query: 83  IISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACT-RAYATPLEAEALAVL 142
           ++       M+TDA+V   +   G+G++LR  +GN + V +        TPL A+ LA+ 
Sbjct: 74  VVK------MNTDAAV--SEEGSGVGVLLR--EGNAEIVGAMVDFHMVKTPLLAKILAIR 133

Query: 143 EGMRLAMLLNVKRLTVLSDSLTVINSINDK 166
           EG+ LA  L V R+ V +DSL  +N I DK
Sbjct: 134 EGLSLATRLGVHRVVVETDSLEALNLIGDK 153

BLAST of Lcy08g012920 vs. ExPASy TrEMBL
Match: A0A803Q185 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.5e-10
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 0

Query: 14  SMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKTMTPQTKED 73
           S +  E   V  W++WN RN   H   VP P    EW    L +F     +      +E+
Sbjct: 359 SKDQFEMFLVITWSLWNTRNACTHDGFVPQPAEMVEWCYKLLEDFQGGRSRPQEVMRREE 418

Query: 74  -VGNIISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYATPLEAEAL 133
            V  +   GE  I + DASV  G    G+G V+R +QG++    S   +   +PL+ E +
Sbjct: 419 GVWKVPRHGEVKI-NVDASVKTGAGYSGLGCVIRGEQGDVLFASSTAIQREYSPLQLELM 478

Query: 134 AVLEGMRLAMLLNVKRLTVLSDSLTVINSINDK 166
           A+L+G+++ +  +++  ++  D L  I  I+ K
Sbjct: 479 AILKGIQVGLQRHIRHFSIELDCLEAIQLIHKK 510

BLAST of Lcy08g012920 vs. ExPASy TrEMBL
Match: A0A1U8P8B0 (uncharacterized protein LOC107956232 OS=Gossypium hirsutum OX=3635 GN=LOC107956232 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 0

Query: 7   WLRLV--ENSMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPK 66
           WL  V    + E L+  C   W IW  RNN+++++++ S       I  Y+ E      +
Sbjct: 4   WLTWVFDRGNEEQLQLFCCSLWFIWFSRNNLVYEKRLKSGSEIARKIRVYITELAVTKVR 63

Query: 67  TMTPQTKEDVGNIISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYA 126
            +T  +  ++  I   G +  +H DA+    +     GI++R++   + A Q+      A
Sbjct: 64  NLTLHSSNNLQQIHKRG-WTFIHFDAAYDRLEFRSASGIIVRNENREILASQAVIHSNIA 123

Query: 127 TPLEAEALAVLEGMRLAMLLNVKRLTVLSDSLTVINSINDKIQLGFMCEQYVIN--ITDI 183
            P  AEA A L+ ++L + L V +LTVL DS TVI          F  ++ VI   ITDI
Sbjct: 124 DPFTAEAYAGLQAIKLGIRLGVNKLTVLGDSKTVIKKCQ-----SFFTDKSVIGAIITDI 177

BLAST of Lcy08g012920 vs. ExPASy TrEMBL
Match: A0A7J6HML3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005782 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 0

Query: 26  WAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKT-MTPQTKEDVGNIISEGEYL 85
           W +W  RNN + Q ++    +   W  D +   L+ + KT   P  K +   I  +  Y 
Sbjct: 506 WLVWQRRNNFVFQHKILDEKIWTSWAIDLISTHLEPHQKTSKNPAMKLNSAWIPPQQNYF 565

Query: 86  IMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYATPLEAEALAVLEGMRLAMLL 145
           +++TDAS++ GQ  CG+  V+RD +G L    ++      + L AEA AV  G++LA+  
Sbjct: 566 LINTDASLIAGQQGCGLSAVIRDPKGGLVVAATSFIPGCLSVLLAEANAVHLGIQLAIRW 625

Query: 146 NVKRLTVLSDSLTVINSIN 164
           ++    V SDS ++I ++N
Sbjct: 626 SITNAQVGSDSHSLIKALN 644

BLAST of Lcy08g012920 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 8.4e-12
Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = 0

Query: 7    WLRLVEN-SMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKT 66
            W  L E    + L    +  W IWNDRN++IH +QV     +CEW+  +L    +A    
Sbjct: 1219 WSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN 1278

Query: 67   MTPQTKEDVGNII-----SEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACT 126
             +P+T+ +   ++     S    L ++TDA+  G  ++   G ++RD   +L A  S   
Sbjct: 1279 YSPRTQSNHRPVVQYWRPSSSVSLKLNTDAACRGASTS--FGCIIRDSSCSLVAATSIRV 1338

Query: 127  RAYATPLEAEALAVLEGMRLAMLLNVKRLTVLSDSLTVINSINDKI 167
                +PL AE   +LEG++ A   N   L V SDSL  I  I ++I
Sbjct: 1339 PFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEI 1382

BLAST of Lcy08g012920 vs. NCBI nr
Match: XP_030930858.1 (uncharacterized protein LOC115956689 [Quercus lobata])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 0

Query: 16  EALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKTMTPQTKEDVG 75
           +AL ++ + AW IW++RN I       S  +  +W  DYL EF  AN K      + + G
Sbjct: 4   QALAQLFMVAWGIWSNRNEIRTGGSQKSASLIVKWTLDYLEEFQVANHKVQITSAESECG 63

Query: 76  NIISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYATPLEAEALAVL 135
             +       ++ DA++     + G+G+V+RD  G+++A  S   RA   PLE EA A+ 
Sbjct: 64  WSLPHAPGFKVNMDAAIFENLRSVGIGVVIRDHLGSVRAAMSKKLRAMLGPLEIEAKAME 123

Query: 136 EGMRLAMLLNVKRLTVLSDSLTV 159
           EG+R A     +  T   DSL V
Sbjct: 124 EGLRFAWDRGFRAATFEGDSLLV 146

BLAST of Lcy08g012920 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-10
Identity = 51/150 (34.00%), Postives = 81/150 (54.00%), Query Frame = 0

Query: 23  VGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEF---LKANPKTMTPQTKE---DVGN 82
           +  WA+WNDR+ +I+++++P  L++ EWI  Y  E         K   P+  E    +G 
Sbjct: 14  ITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVNEWRPPLGG 73

Query: 83  IISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACT-RAYATPLEAEALAVL 142
           ++       M+TDA+V   +   G+G++LR  +GN + V +        TPL A+ LA+ 
Sbjct: 74  VVK------MNTDAAV--SEEGSGVGVLLR--EGNAEIVGAMVDFHMVKTPLLAKILAIR 133

Query: 143 EGMRLAMLLNVKRLTVLSDSLTVINSINDK 166
           EG+ LA  L V R+ V +DSL  +N I DK
Sbjct: 134 EGLSLATRLGVHRVVVETDSLEALNLIGDK 153

BLAST of Lcy08g012920 vs. NCBI nr
Match: XP_040960280.1 (uncharacterized protein LOC121223215 [Gossypium hirsutum])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-09
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 0

Query: 7   WLRLV--ENSMEALERICVGAWAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPK 66
           WL  V  + + E  +  C   WAIWN RN ++H+R++ S       I  YL E      +
Sbjct: 15  WLTWVFEKGTNEQCKVFCCALWAIWNSRNQLVHERKIVSGRDLVHRIKAYLAEIETVGME 74

Query: 67  TMTPQTKEDVGNIISEGEYLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYA 126
             T +T E V        +  +H DA+    +     G+++RD +G L+A+++      +
Sbjct: 75  KRTLKTVE-VQRHWEVRTHDTIHFDAAFDTNRYRSASGVIVRDWRGELRALKTTLHSNIS 134

Query: 127 TPLEAEALAVLEGMRLAMLLNVKRLTVLSDSLTVINSINDK 166
           +P  AEA A L+ ++L + + ++ +T++ DS TVI     K
Sbjct: 135 SPFLAEAYACLQAVKLGLAMGLRSVTIMGDSKTVIKKCQAK 174

BLAST of Lcy08g012920 vs. NCBI nr
Match: XP_030485460.1 (uncharacterized protein LOC115702143 [Cannabis sativa])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-09
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 0

Query: 26  WAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKANPKT-MTPQTKEDVGNIISEGEYL 85
           W +W  RNN + Q ++    +   W  D +   L+ + KT   P  K +   I  +  Y 
Sbjct: 163 WLVWQRRNNFVFQHKILDEKIWTSWAIDLISTHLEPHQKTSKNPAMKLNSAWIPPQQNYF 222

Query: 86  IMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQSACTRAYATPLEAEALAVLEGMRLAMLL 145
           +++TDAS++ GQ  CG+  V+RD +G L    ++      + L AEA AV  G++LA+  
Sbjct: 223 LINTDASLIAGQQGCGLSAVIRDPKGGLVVAATSFIPGCLSVLLAEANAVHLGIQLAIRW 282

Query: 146 NVKRLTVLSDSLTVINSIN 164
           ++    V SDS ++I ++N
Sbjct: 283 SITNAQVGSDSHSLIKALN 301

BLAST of Lcy08g012920 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 39/148 (26.35%), Postives = 63/148 (42.57%), Query Frame = 0

Query: 26  WAIWNDRNNIIHQRQVPSPLVRCEWINDYLLEFLKAN---PKTMTPQTKEDVGNIISEGE 85
           W IW  RN +I Q    S +          L +  A    PK      + +    ++   
Sbjct: 101 WHIWKARNQLIFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHD- 160

Query: 86  YLIMHTDASVMGGQSTCGMGIVLRDKQGNLKAVQ--SACTRAYATPLEAEALAVLEGMRL 145
             + + DA+     S  G G V +    + K +   SA  R + +PL AEA A+   M  
Sbjct: 161 -FLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLH 220

Query: 146 AMLLNVKRLTVLSDSLTVINSINDKIQL 169
           A+ L    L VLSDS ++++++N  + L
Sbjct: 221 ALQLERSDLLVLSDSKSIVDALNSNVSL 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX304.1e-1231.33uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DZK32.9e-1034.00uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803Q1856.5e-1028.76Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A1U8P8B01.1e-0929.44uncharacterized protein LOC107956232 OS=Gossypium hirsutum OX=3635 GN=LOC1079562... [more]
A0A7J6HML31.1e-0930.94Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005782 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022158377.18.4e-1231.33uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030930858.11.2e-1032.87uncharacterized protein LOC115956689 [Quercus lobata][more]
XP_022158489.16.0e-1034.00uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_040960280.11.0e-0928.57uncharacterized protein LOC121223215 [Gossypium hirsutum][more]
XP_030485460.12.3e-0930.94uncharacterized protein LOC115702143 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT1G10000.12.4e-0426.35Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 88..188
e-value: 4.2E-14
score: 52.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 83..199
e-value: 4.0E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR47074:SF37PROTEIN, PUTATIVE-RELATEDcoord: 87..165
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 87..165
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 88..166
e-value: 4.78425E-15
score: 66.5688
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 83..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g012920.1Lcy08g012920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity