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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGAACAGACATGATTATCAGAAACTCAAAGGGTGAAATGATGGCAGCTGCAGAAAGTTTCATGAGAACGAGTTGTTCTGTAGAGTGGGCAGAAGCAAAGACACTGGTGGAGGGTGTGCAACTAGCTTTGGATTCGGGCTTATCACCAGTCTGGACAGAGATAGATTTCAAAATTGTGTGGAATTTACTCTATGATCGCCAACAACATTTAAATGAGATTGCCCCCTAA mRNA sequence ATGGGAACAGACATGATTATCAGAAACTCAAAGGGTGAAATGATGGCAGCTGCAGAAAGTTTCATGAGAACGAGTTGTTCTGTAGAGTGGGCAGAAGCAAAGACACTGGTGGAGGGTGTGCAACTAGCTTTGGATTCGGGCTTATCACCAGTCTGGACAGAGATAGATTTCAAAATTGTGTGGAATTTACTCTATGATCGCCAACAACATTTAAATGAGATTGCCCCCTAA Coding sequence (CDS) ATGGGAACAGACATGATTATCAGAAACTCAAAGGGTGAAATGATGGCAGCTGCAGAAAGTTTCATGAGAACGAGTTGTTCTGTAGAGTGGGCAGAAGCAAAGACACTGGTGGAGGGTGTGCAACTAGCTTTGGATTCGGGCTTATCACCAGTCTGGACAGAGATAGATTTCAAAATTGTGTGGAATTTACTCTATGATCGCCAACAACATTTAAATGAGATTGCCCCCTAA Protein sequence MGTDMIIRNSKGEMMAAAESFMRTSCSVEWAEAKTLVEGVQLALDSGLSPVWTEIDFKIVWNLLYDRQQHLNEIAP
Homology
BLAST of Lcy08g012430 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 8.9e-05 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 2 GTDMIIRNSKGEMMAAAESFMRTSCSVEWAEAKTLVEGVQLALDSGLSPVWTEIDFKIVW 61
G +IIRN +G++MA+A ++ SV+ AEA VEG+QLA G++PV E D ++
Sbjct: 58 GLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIF 117
Query: 62 NLLYDRQQHLNE 74
NL + L+E
Sbjct: 118 NLFSQPSEDLSE 129
BLAST of Lcy08g012430 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia]) HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0
Query: 2 GTDMIIRNSKGEMMAAAESFMRTSCSVEWAEAKTLVEGVQLALDSGLSPVWTEIDFKIVW 61
G +IIRN +G++MA+A ++ SV+ AEA VEG+QLA G++PV E D ++
Sbjct: 58 GLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIF 117
Query: 62 NLLYDRQQHLNE 74
NL + L+E
Sbjct: 118 NLFSQPSEDLSE 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CIF1 | 8.9e-05 | 40.28 | uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022140628.1 | 1.8e-04 | 40.28 | uncharacterized protein LOC111011237 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002156 | Ribonuclease H domain | PFAM | PF13456 | RVT_3 | coord: 5..73
e-value: 9.1E-13
score: 48.1 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
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