Lcy08g011230 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g011230
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr08: 37718229 .. 37718454 (+)
RNA-Seq ExpressionLcy08g011230
SyntenyLcy08g011230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACGAGCAAGGACGAAATGGAGTGAAACCGTCGGAAGGAGTTGTATGCAGAGTTGCAGTCCATACCGAGAGTGTCTATGTAGGATGACCTGGTGATCGCACGGGCTTTACTAGCTGATTTAAACATGCTGACTCACTTCATGGACTTCCCTCTGGAGTGGAAGTATGACTATTGCATGGAAGTCCTTGGTAGAGCACCCAGACAGCCCAGCCAACCGTGA

mRNA sequence

ATGGCCGACGAGCAAGGACGAAATGGAGTGAAACCGTCGGAAGGAGTTGATGACCTGGTGATCGCACGGGCTTTACTAGCTGATTTAAACATGCTGACTCACTTCATGGACTTCCCTCTGGAGTGGAAGTATGACTATTGCATGGAAGTCCTTGGTAGAGCACCCAGACAGCCCAGCCAACCGTGA

Coding sequence (CDS)

ATGGCCGACGAGCAAGGACGAAATGGAGTGAAACCGTCGGAAGGAGTTGATGACCTGGTGATCGCACGGGCTTTACTAGCTGATTTAAACATGCTGACTCACTTCATGGACTTCCCTCTGGAGTGGAAGTATGACTATTGCATGGAAGTCCTTGGTAGAGCACCCAGACAGCCCAGCCAACCGTGA

Protein sequence

MADEQGRNGVKPSEGVDDLVIARALLADLNMLTHFMDFPLEWKYDYCMEVLGRAPRQPSQP
Homology
[Close]
BLAST of Lcy08g011230 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 12  PSEGVDD-LVIARALLADLNMLTHFMDFPLEWKYDYCMEVLGRAP 56
           P   VDD L++A +LL D  ML  F+D+P EWKY  CM +LGR P
Sbjct: 503 PGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

[Close]
BLAST of Lcy08g011230 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 12  PSEGVDD-LVIARALLADLNMLTHFMDFPLEWKYDYCMEVLGRAP 56
           P   VDD L++A +LL D  ML  F+D+P EWKY  CM +LGR P
Sbjct: 217 PGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Lcy08g011230 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 12  PSEGVDD-LVIARALLADLNMLTHFMDFPLEWKYDYCMEVLGRAP 56
           P   VDD L++A +LL D  ML  F+D+P EWKY  CM +LGR P
Sbjct: 217 PGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

[Close]
BLAST of Lcy08g011230 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-04
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 12  PSEGVDD-LVIARALLADLNMLTHFMDFPLEWKYDYCMEVLGRAP 56
           P   VDD L++A +LL D  ML  F+D+P EWKY  CM +LGR P
Sbjct: 503 PGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

The following BLAST results are available for this feature:
BLAST of Lcy08g011230 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g011230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VG453.5e-0453.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7F73.5e-0453.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy08g011230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050106.17.3e-0453.33retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065306.17.3e-0453.33retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lcy08g011230 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g011230.1Lcy08g011230.1mRNA