Lcy08g006660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g006660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CLAVATA3/ESR-RELATED 7
Location	Chr08: 8404203 .. 8404478 (-)
RNA-Seq Expression	Lcy08g006660
Synteny	Lcy08g006660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATAACCTTCGTTTCAACACAAAGCTTGCTCCATTAATGGCTGTCCTTTTCATGGTGATGCTCGTCGTGGCGGTGGCCGGCCGCCATGCATCTCCGCCGTGGCCGGAGAAGGAGGGCGGCGGCAGCAGCAGCATTATGATAATGCGTAGATTAGGTTATAGCAAAAGCCAAATGGAGCATTTGAGAAGACTTTCTTCTTCTTCCATTGCAAGATACACTCCTGGAGGACCTGATTCTCAGCATCATTCTCAACCTCCTCGTTTACCTTAG

mRNA sequence

ATGGCCAATAACCTTCGTTTCAACACAAAGCTTGCTCCATTAATGGCTGTCCTTTTCATGGTGATGCTCGTCGTGGCGGTGGCCGGCCGCCATGCATCTCCGCCGTGGCCGGAGAAGGAGGGCGGCGGCAGCAGCAGCATTATGATAATGCGTAGATTAGGTTATAGCAAAAGCCAAATGGAGCATTTGAGAAGACTTTCTTCTTCTTCCATTGCAAGATACACTCCTGGAGGACCTGATTCTCAGCATCATTCTCAACCTCCTCGTTTACCTTAG

Coding sequence (CDS)

ATGGCCAATAACCTTCGTTTCAACACAAAGCTTGCTCCATTAATGGCTGTCCTTTTCATGGTGATGCTCGTCGTGGCGGTGGCCGGCCGCCATGCATCTCCGCCGTGGCCGGAGAAGGAGGGCGGCGGCAGCAGCAGCATTATGATAATGCGTAGATTAGGTTATAGCAAAAGCCAAATGGAGCATTTGAGAAGACTTTCTTCTTCTTCCATTGCAAGATACACTCCTGGAGGACCTGATTCTCAGCATCATTCTCAACCTCCTCGTTTACCTTAG

Protein sequence

MANNLRFNTKLAPLMAVLFMVMLVVAVAGRHASPPWPEKEGGGSSSIMIMRRLGYSKSQMEHLRRLSSSSIARYTPGGPDSQHHSQPPRLP

Homology

[Close]

BLAST of Lcy08g006660 vs. ExPASy Swiss-Prot
Match: Q8S8N1 (CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana OX=3702 GN=CLE7 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12 APLMAVLFMVMLVVAVAGRHASPPWPEKEGGGSSSIMIMRRLGYSKSQMEHL-RRLS-SS 71
          A L+ V+   +LV+ + GR        K+G  +    +++RLGY+ S+++ + R LS  +
Sbjct: 5  ALLLFVMLTFLLVIEMEGRILRVNSKTKDGESND---LLKRLGYNVSELKRIGRELSVQN 64

Query: 72 SIARYTPGGPDSQHHSQP 88
           + R++PGGPD QHHS P
Sbjct: 65 EVDRFSPGGPDPQHHSYP 79

[Close]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL
Match: A0A5D3C664 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00250 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 66/91 (72.53%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 5  LRFNTKLAPLMAVLFMVMLVVAVAGRHASP-PWPEKEGG---GSSSIMIMRRLGYSKSQM 64
          LR N  LAPLMAVLFMVMLV A A RHA+  PW  +E      SS  MIMR+ GYSK QM
Sbjct: 3  LRSNRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQM 62

Query: 65 EHLRRLSSSSIARYTPGGPDSQHHSQPPRLP 92
          EHLRRLSSSS ARY PGGPDSQHHSQPPRLP
Sbjct: 63 EHLRRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL
Match: A0A0A0KGI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 62/92 (67.39%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 5  LRFNTKLA-PLMAVLFMVMLVVAVAGRHASP-PWPEKEGG---GSSSIMIMRRLGYSKSQ 64
          LRFN  LA PLMAVLFM MLV A    HA+   W  +E      SSS M+MR+ GYSK Q
Sbjct: 3  LRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQ 62

Query: 65 MEHLRRLSSSSIARYTPGGPDSQHHSQPPRLP 92
          MEHLRRLSSSS  RY PGGPDSQHHSQPPRLP
Sbjct: 63 MEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

[Close]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL
Match: A0A438JK32 (Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDp000546_1 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-04
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 46  SIMIMRRLGYSKSQMEHLRRLSS--SSIARYTPGGPDSQHHSQPPRLP 92
           S +++R LGY +S+++HL+R+S+  +   R +PGGPD QHHS+PP LP
Sbjct: 870 SQILLRDLGYDESKLKHLQRMSTLDAGANRVSPGGPDPQHHSKPPALP 917

[Close]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL
Match: A0A2C9UV50 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G091100 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-04
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 17 VLFMVMLVVAVAGRHASPPWPEKEGGGSSSIMIMRRLGYSKSQMEHLRRLSSSSIARYTP 76
          V+FMV L++ V    A     E       S +++R +GY++S++E+ R++   +  R +P
Sbjct: 11 VVFMVALIILVMRSEAKVTRNELH-----SRLLLREIGYTESKLEYHRQIFKQNSDRVSP 70

Query: 77 GGPDSQHHSQPPR 90
          GGPD +HHS PPR
Sbjct: 71 GGPDPEHHSHPPR 78

[Close]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL
Match: A0A565C1T9 (Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS18001 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.0e-04
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 12 APLMAVLFMVMLVVAVAGRHASPPWPEKEGGGSSSIMIMRRLGYSKSQMEHLRRLS-SSS 71
          A L+ V+  ++LV+ + GR         + GGS+   +++RLGY+ S+++ + +LS  + 
Sbjct: 5  ALLLIVMLTLLLVIGIEGRIVRVNSKITKDGGSND--LLQRLGYNVSELKRIGKLSLENE 64

Query: 72 IARYTPGGPDSQHHSQP 88
          + R++PGGPD QHHS P
Sbjct: 65 VDRFSPGGPDPQHHSYP 79

[Close]

BLAST of Lcy08g006660 vs. NCBI nr
Match: KAG6589262.1 (hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 4.5e-26
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 4  NLRFNTKLAPLMAVLFMVMLVVAVAGRHASPPWPEKE-GGGSSSIMIMRRLGYSKSQMEH 63
          NLRF++KLAP MAVLF+ ML+V VAGRHA+PPW  +E    SSSIMIMR+ GYSK+QMEH
Sbjct: 3  NLRFSSKLAPFMAVLFIGMLLVTVAGRHATPPWTTEEVTESSSSIMIMRKFGYSKTQMEH 62

Query: 64 LRRLSSSSIARYTPGGPDSQHHSQPPRLP 92
          L+RLSSS+  RYTPGGPDSQHHS PPRLP
Sbjct: 63 LKRLSSST-ERYTPGGPDSQHHSHPPRLP 90

[Close]

BLAST of Lcy08g006660 vs. NCBI nr
Match: KAA0061638.1 (hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK05869.1 hypothetical protein E5676_scaffold1465G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 4.7e-23
Identity = 66/91 (72.53%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 5  LRFNTKLAPLMAVLFMVMLVVAVAGRHASP-PWPEKEGG---GSSSIMIMRRLGYSKSQM 64
          LR N  LAPLMAVLFMVMLV A A RHA+  PW  +E      SS  MIMR+ GYSK QM
Sbjct: 3  LRSNRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQM 62

Query: 65 EHLRRLSSSSIARYTPGGPDSQHHSQPPRLP 92
          EHLRRLSSSS ARY PGGPDSQHHSQPPRLP
Sbjct: 63 EHLRRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of Lcy08g006660 vs. NCBI nr
Match: KAG6572409.1 (hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 2   ANNLRFNTKLAPLMAVLFMVMLVVAVAGRHASPPWPEK----EGGG-----SSSIMIMRR 61
           A + RFN K APL AV+FMVMLV A AGRHA P   E+    EGGG     SSS MIMRR
Sbjct: 3   ATHHRFNPKFAPLTAVIFMVMLVTAAAGRHALPLRTEEAAAIEGGGGSSSSSSSSMIMRR 62

Query: 62  LGYSKSQMEHLRRLSSSSIARYTPGGPDSQHHSQPPRLP 92
           LGY+KSQMEHLRRLSSS+ ARY PGGPDSQHHS+ PR P
Sbjct: 63  LGYTKSQMEHLRRLSSST-ARYIPGGPDSQHHSRSPRSP 100

[Close]

BLAST of Lcy08g006660 vs. NCBI nr
Match: KAE8647339.1 (hypothetical protein Csa_003556, partial [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 59/89 (66.29%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 5  LRFNTKLA-PLMAVLFMVMLVVAVAGRHASP-PWPEKEGG---GSSSIMIMRRLGYSKSQ 64
          LRFN  LA PLMAVLFM MLV A    HA+   W  +E      SSS M+MR+ GYSK Q
Sbjct: 3  LRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQ 62

Query: 65 MEHLRRLSSSSIARYTPGGPDSQHHSQPP 89
          MEHLRRLSSSS  RY PGGPDSQHHSQPP
Sbjct: 63 MEHLRRLSSSSTERYIPGGPDSQHHSQPP 91

[Close]

BLAST of Lcy08g006660 vs. TAIR 10
Match: AT2G31082.1 (CLAVATA3/ESR-RELATED 7 )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12 APLMAVLFMVMLVVAVAGRHASPPWPEKEGGGSSSIMIMRRLGYSKSQMEHL-RRLS-SS 71
          A L+ V+   +LV+ + GR        K+G  +    +++RLGY+ S+++ + R LS  +
Sbjct: 5  ALLLFVMLTFLLVIEMEGRILRVNSKTKDGESND---LLKRLGYNVSELKRIGRELSVQN 64

Query: 72 SIARYTPGGPDSQHHSQP 88
           + R++PGGPD QHHS P
Sbjct: 65 EVDRFSPGGPDPQHHSYP 79

The following BLAST results are available for this feature:

BLAST of Lcy08g006660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8N1	1.7e-04	35.90	CLAVATA3/ESR (CLE)-related protein 7 OS=Arabidopsis thaliana OX=3702 GN=CLE7 PE=...	[more]

BLAST of Lcy08g006660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C664	2.3e-23	72.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGI4	6.9e-20	67.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1	[more]
A0A438JK32	6.9e-04	50.00	Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDp...	[more]
A0A2C9UV50	6.9e-04	36.99	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G091100 PE=3 SV=...	[more]
A0A565C1T9	9.0e-04	36.36	Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS18001 PE=3 SV...	[more]

BLAST of Lcy08g006660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589262.1	4.5e-26	74.16	hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061638.1	4.7e-23	72.53	hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK0586...	[more]
KAG6572409.1	1.4e-22	68.69	hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647339.1	1.0e-17	66.29	hypothetical protein Csa_003556, partial [Cucumis sativus]	[more]

BLAST of Lcy08g006660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31082.1	1.2e-05	35.90	CLAVATA3/ESR-RELATED 7	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..91
None	No IPR available	PANTHER	PTHR36016:SF9	SUBFAMILY NOT NAMED	coord: 10..91
IPR039617	CLAVATA3/ESR (CLE)-related protein	PANTHER	PTHR36016	CLAVATA3/ESR (CLE)-RELATED PROTEIN 7	coord: 10..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g006660.1	Lcy08g006660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005576	extracellular region