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Lcy08g006340 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTATTGCCGATATCTTCTTGCATTCGTAAGCACAGTGAAATTTCTTGCGTTTCGTATTGGTAACTTTCGTGTTCCACTGATGTGCTCAAGTGAATTTTCAGACGAGTGTCAGATTTCGCCTGTATGATTGCAATTATCTGCTAATCTCAATAATAGTTTTGCTGAAAGTGGATTCTATTTTGATTTTACTTTATCGAGGTATGTTTGATCTCTTCAGATGAGAATGCGCATCTTAGCCAGATTTAGTTTTCAAGCTGGAATTGATCTGCCAAAAATTCAAATGAATCCTTGAAGTTCCTGATTGTTTTTCTAGCTAGGATTGCTTTAGTTTTCACATTTTGGCTCTGATATGCTTTTCTTCGATTCAATCGTTCTATTTAAGTTTTTCGAATTTCTACATGCAAAATGATTCTTATCTTCGTTCGCTTACTTGATCGGCAGGTTCTTGCCCTTAAACTGATAAAATCTGAAAAGAATGTTCTGCAAATTTTCTGCAAAATTTTTGAATATTTGTGTCGCCTCATTTTGTAAATCTCAGCAAATACTGAAAGCTGAAACTGTCATAATAGATAGCATACGTTTAGGAGTTCTCCCGGATGTAGTGACTTACAATACGTTGATTGATGGATATTGTCGATTTAGCGGTATCGATGCTGCTTATTATGTTCTTTATAGAATGAGGGAAGCTGGTATAATCCCAGATGTCATTACTTATAATTCCTTGATTGCTGGTGCAACCAGGAATTGCTCATTAAAACAGTCCCTTGATCTGTTTGAAGAAATGCTTCAATCACGTATCACTCCTGTTATATGGAGTTACAACACTTTGGTGCACTGCTTCTTCATATTAGGAAAGCCAGACAAAGCCAATAGAGTTTGTATGGATATTATACTTAAAGACCTCTCTCCTCATCCATTACGTTTAATACGGTGATTGACGGCCTTTGTAAACATGGAATATATAAGTAATGCCGTCATGTTATTAAGAAATTTACAGCGCCATGGATTTGTTCCTCAATTAGTTACATATATATAACATTCTTATTAATGGTCTTTACACTATGGGTAGGTTGAAGGCTGCTTGGAGGATGCTCAATGAGGCCGTGGATTTGGGTCTCGAGCCTGATGCTGTAATGTACACTACATCGATGAAAAAGTTGCTTTAG ATGGTTTATTGCCGATATCTTCTTGCATTCGTAAGCACAGTGAAATTTCTTGCGTTTCGTATTGGTAACTTTCGTGTTCCACTGATGTGCTCAAGTGAATTTTCAGACGAGTGTCAGATTTCGCCTCAAATACTGAAAGCTGAAACTGTCATAATAGATAGCATACGTTTAGGAGTTCTCCCGGATGTAGTGACTTACAATACGTTGATTGATGGATATTGTCGATTTAGCGGTATCGATGCTGCTTATTATGTTCTTTATAGAATGAGGGAAGCTGGTATAATCCCAGATGTCATTACTTATAATTCCTTGATTGCTGGTGCAACCAGGAATTGCTCATTAAAACAGTCCCTTGATCTGTTTGAAGAAATGCTTCAATCACGTATCACTCCTGTTATATGGAGTTACAACACTTTGGTGCACTGCTTCTTCATATTAGGAAAGCCAGACAAAGCCAATAGAGTTTGTATGGATATTATACTTAAAGACCTCTCTCCTCATCCATTACGTTTAATACGGTTGAAGGCTGCTTGGAGGATGCTCAATGAGGCCGTGGATTTGGGTCTCGAGCCTGATGCTGTAATGTACACTACATCGATGAAAAAGTTGCTTTAG ATGGTTTATTGCCGATATCTTCTTGCATTCGTAAGCACAGTGAAATTTCTTGCGTTTCGTATTGGTAACTTTCGTGTTCCACTGATGTGCTCAAGTGAATTTTCAGACGAGTGTCAGATTTCGCCTCAAATACTGAAAGCTGAAACTGTCATAATAGATAGCATACGTTTAGGAGTTCTCCCGGATGTAGTGACTTACAATACGTTGATTGATGGATATTGTCGATTTAGCGGTATCGATGCTGCTTATTATGTTCTTTATAGAATGAGGGAAGCTGGTATAATCCCAGATGTCATTACTTATAATTCCTTGATTGCTGGTGCAACCAGGAATTGCTCATTAAAACAGTCCCTTGATCTGTTTGAAGAAATGCTTCAATCACGTATCACTCCTGTTATATGGAGTTACAACACTTTGGTGCACTGCTTCTTCATATTAGGAAAGCCAGACAAAGCCAATAGAGTTTGTATGGATATTATACTTAAAGACCTCTCTCCTCATCCATTACGTTTAATACGGTTGAAGGCTGCTTGGAGGATGCTCAATGAGGCCGTGGATTTGGGTCTCGAGCCTGATGCTGTAATGTACACTACATCGATGAAAAAGTTGCTTTAG MVYCRYLLAFVSTVKFLAFRIGNFRVPLMCSSEFSDECQISPQILKAETVIIDSIRLGVLPDVVTYNTLIDGYCRFSGIDAAYYVLYRMREAGIIPDVITYNSLIAGATRNCSLKQSLDLFEEMLQSRITPVIWSYNTLVHCFFILGKPDKANRVCMDIILKDLSPHPLRLIRLKAAWRMLNEAVDLGLEPDAVMYTTSMKKLL Homology
BLAST of Lcy08g006340 vs. ExPASy Swiss-Prot
Match: P0C043 (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana OX=3702 GN=At4g17915 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 3.6e-34 Identity = 78/124 (62.90%), Postives = 91/124 (73.39%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy Swiss-Prot
Match: Q56XR6 (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX=3702 GN=At5g46680 PE=2 SV=2) HSP 1 Score: 145.2 bits (365), Expect = 8.1e-34 Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.2e-18 Identity = 56/169 (33.14%), Postives = 91/169 (53.85%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17 Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16 Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy TrEMBL
Match: A0A6J1D2P0 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica charantia OX=3673 GN=LOC111016743 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 4.7e-61 Identity = 133/209 (63.64%), Postives = 144/209 (68.90%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy TrEMBL
Match: A0A1S3B4M5 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo OX=3656 GN=LOC103486102 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 4.0e-60 Identity = 132/206 (64.08%), Postives = 144/206 (69.90%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy TrEMBL
Match: A0A0A0KYL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G481190 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 8.9e-60 Identity = 131/204 (64.22%), Postives = 143/204 (70.10%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy TrEMBL
Match: A0A6J1IFW8 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59 Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 0
BLAST of Lcy08g006340 vs. ExPASy TrEMBL
Match: A0A6J1ICF9 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59 Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 0
BLAST of Lcy08g006340 vs. NCBI nr
Match: XP_022147934.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147935.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147936.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147937.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147938.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia]) HSP 1 Score: 244.2 bits (622), Expect = 9.8e-61 Identity = 133/209 (63.64%), Postives = 144/209 (68.90%), Query Frame = 0
BLAST of Lcy08g006340 vs. NCBI nr
Match: XP_031740560.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >KAE8649736.1 hypothetical protein Csa_012878 [Cucumis sativus]) HSP 1 Score: 241.5 bits (615), Expect = 6.3e-60 Identity = 132/206 (64.08%), Postives = 144/206 (69.90%), Query Frame = 0
BLAST of Lcy08g006340 vs. NCBI nr
Match: XP_008442168.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442169.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442170.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo]) HSP 1 Score: 241.1 bits (614), Expect = 8.3e-60 Identity = 132/206 (64.08%), Postives = 144/206 (69.90%), Query Frame = 0
BLAST of Lcy08g006340 vs. NCBI nr
Match: XP_022973870.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucurbita maxima]) HSP 1 Score: 239.6 bits (610), Expect = 2.4e-59 Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 0
BLAST of Lcy08g006340 vs. NCBI nr
Match: XP_022973869.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucurbita maxima]) HSP 1 Score: 239.6 bits (610), Expect = 2.4e-59 Identity = 130/206 (63.11%), Postives = 142/206 (68.93%), Query Frame = 0
BLAST of Lcy08g006340 vs. TAIR 10
Match: AT5G46680.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 145.2 bits (365), Expect = 5.7e-35 Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of Lcy08g006340 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 92.4 bits (228), Expect = 4.4e-19 Identity = 56/169 (33.14%), Postives = 91/169 (53.85%), Query Frame = 0
BLAST of Lcy08g006340 vs. TAIR 10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 90.5 bits (223), Expect = 1.7e-18 Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 0
BLAST of Lcy08g006340 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17 Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 0
BLAST of Lcy08g006340 vs. TAIR 10
Match: AT1G22960.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 84.3 bits (207), Expect = 1.2e-16 Identity = 54/168 (32.14%), Postives = 90/168 (53.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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