Lcy07g013540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g013540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protodermal factor 1-like
Location	Chr07: 42663239 .. 42664510 (-)
RNA-Seq Expression	Lcy07g013540
Synteny	Lcy07g013540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCCTCAACCCCTCTATATATTCCCCTTTGTTCCAAACATTCCATCCACCATTAGCCTTCCTTCTTTCCCATTTCATATCCCTTTGCTCCAAGCAGCTCCAAACAAGAAACCATGAGAAGCAAACAAGCTTCTGCTCTCCTTTTCACCTTGCTTGCTGGGTTGCTTTCTCACAGCCTTGTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAAAGCTATTACTCTCCTTCAGACCCACATGCTGGAACTCCCCCATCAGGTCACACAGACATTCACAAAGAAACAAACATTTAGTATCAGCATAGTAGTTATAGTAGTAACTAGTAGACTTACAGCATTCTACATTTTGCATTGCAGGTTCACACAGCAACCCCATACCACCATCACATGGCTATGGAGGCACACCGCCGCATTACTCCACACCAACCCCTTCGACGCCATCGAAGCCTCCGTCTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCTCCAACCATCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACACCAAGCACACCAAGCACTCCCTCTACTCCATTTATTGGTACCTGCAAGTAAGTCACAGTAACTGTTTCAAAGGAGAAGAAACTATCATCTTTATGTTCTAAAAAATGTGTTTGTTTGCAGTTATTGGCTGAATCACCCAGGAATGATATGGGGAGTATTGGGATGGTCGGGAACGTTGGGAAATTGCTTTGGAGCAACCAATATCCCAGGATTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTGAGAGAAGGCTCTGCTTCGTACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGAGCGAGTTTTGTCTCGGCACTTAGCTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAGTTAGCCAACGAGGGCAAAATTAAGCACGGAGCCTGAACACGCCCTTTGCCTTGCCAGTTACCACCTTAATAATTAATGAGTGTGCCTTAGCAGTTAGTAGTGAGACAGTGAGACCAATTTACCATTTCATGTCTTGTTTTGTTTTCTTTTGTTCTCGTTTGTTGTTCCTTGCATCTCTTATGTTCATGTATTTGAACATAGAGATGCTCGGTCTTTATTTTCCAGATTCATTGTGAAGTCAAGATTTGTTGCGAGTAGTTCATTATGATTAATCAGATGTTATTCAAAAAGGGGTTGAAATTAAA

mRNA sequence

CTTCCCCTCAACCCCTCTATATATTCCCCTTTGTTCCAAACATTCCATCCACCATTAGCCTTCCTTCTTTCCCATTTCATATCCCTTTGCTCCAAGCAGCTCCAAACAAGAAACCATGAGAAGCAAACAAGCTTCTGCTCTCCTTTTCACCTTGCTTGCTGGGTTGCTTTCTCACAGCCTTGTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAAAGCTATTACTCTCCTTCAGACCCACATGCTGGAACTCCCCCATCAGGTTCACACAGCAACCCCATACCACCATCACATGGCTATGGAGGCACACCGCCGCATTACTCCACACCAACCCCTTCGACGCCATCGAAGCCTCCGTCTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCTCCAACCATCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACACCAAGCACACCAAGCACTCCCTCTACTCCATTTATTGGTACCTGCAATTATTGGCTGAATCACCCAGGAATGATATGGGGAGTATTGGGATGGTCGGGAACGTTGGGAAATTGCTTTGGAGCAACCAATATCCCAGGATTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTGAGAGAAGGCTCTGCTTCGTACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGAGCGAGTTTTGTCTCGGCACTTAGCTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAGTTAGCCAACGAGGGCAAAATTAAGCACGGAGCCTGAACACGCCCTTTGCCTTGCCAGTTACCACCTTAATAATTAATGAGTGTGCCTTAGCAGTTAGTAGTGAGACAGTGAGACCAATTTACCATTTCATGTCTTGTTTTGTTTTCTTTTGTTCTCGTTTGTTGTTCCTTGCATCTCTTATGTTCATGTATTTGAACATAGAGATGCTCGGTCTTTATTTTCCAGATTCATTGTGAAGTCAAGATTTGTTGCGAGTAGTTCATTATGATTAATCAGATGTTATTCAAAAAGGGGTTGAAATTAAA

Coding sequence (CDS)

ATGAGAAGCAAACAAGCTTCTGCTCTCCTTTTCACCTTGCTTGCTGGGTTGCTTTCTCACAGCCTTGTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAAAGCTATTACTCTCCTTCAGACCCACATGCTGGAACTCCCCCATCAGGTTCACACAGCAACCCCATACCACCATCACATGGCTATGGAGGCACACCGCCGCATTACTCCACACCAACCCCTTCGACGCCATCGAAGCCTCCGTCTGGTGGTGGATACTACAACCCTCCATCTTCCGGTGGCGGTAGCCCTCCAACCATCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACACCAAGCACACCAAGCACTCCCTCTACTCCATTTATTGGTACCTGCAATTATTGGCTGAATCACCCAGGAATGATATGGGGAGTATTGGGATGGTCGGGAACGTTGGGAAATTGCTTTGGAGCAACCAATATCCCAGGATTTGGAACAAATCTCAACTTGCTCCAAGCACTTTCAAACACAAGGACTGATGGGTTTGGGGCCCTTTTGAGAGAAGGCTCTGCTTCGTACCTCAACTCTCTTGCCAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGAGCGAGTTTTGTCTCGGCACTTAGCTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAGTTAGCCAACGAGGGCAAAATTAAGCACGGAGCCTGA

Protein sequence

MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPSHGYGGTPPHYSTPTPSTPSKPPSGGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPSTPSTPFIGTCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNLLQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIFKLANEGKIKHGA

Homology

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BLAST of Lcy07g013540 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 130/302 (43.05%), Postives = 160/302 (52.98%), Query Frame = 0


Query: 7   SALLFTLLAGLLSHSLVIPVLSTTIADQKSYY-SPSDPHAGTPPS--------------- 66
           S  ++ L A LLS  L   V S    D K+YY SP     GTPPS               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSNPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S+P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGYYNPPSSG------------------GGSPPTIPVDPGTPSTPSTPSTP 186
            TPS PPSGG Y +PP                     GGSPPT  +DPGTP TP  P+  
Sbjct: 126 PTPSHPPSGGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA-- 185

Query: 187 STPSTPFIGTCNYWLNHPGMIWGVLGWSGTLGNCFGA----TNIPGFGTNLNLLQALSNT 236
             P  P  GTC+YW NHP +IWG+LGW GT+G  FG     ++IPGF  ++NLLQALSNT
Sbjct: 186 --PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNT 245

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BLAST of Lcy07g013540 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.3e-106
Identity = 212/249 (85.14%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGG-GYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PT PVDPGTPSTPSTPSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPFIG-------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNL 180
           PSTP                TCN+WLNHPGMIWGVLGW GTLGNCFGATN+PGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIF 236
           LQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQANIF
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of Lcy07g013540 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.6e-106
Identity = 213/252 (84.52%), Postives = 222/252 (88.10%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSG-GGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PT PVDPGTPSTPSTPSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPFIG----------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTN 180
           PSTP                   TCN+WLNHPGMIWGVLGW GTLGNCFGATN+PGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQA 236
           LNLLQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

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BLAST of Lcy07g013540 vs. ExPASy TrEMBL
Match: A0A6J1D8U7 (protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.5e-103
Identity = 201/236 (85.17%), Postives = 214/236 (90.68%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MRSKQASALLFTLLAGLLSHSLVIPV S+TIADQKSYYSP DPHAGTPP+G+H+NP+PP 
Sbjct: 1   MRSKQASALLFTLLAGLLSHSLVIPVFSSTIADQKSYYSP-DPHAGTPPTGTHNNPMPPP 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPS-GGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPH  TPTPSTP  PPS GGGYYNPPSSGGGSPPT PVDPGTPS PSTP     
Sbjct: 61  HGYGGTPPHQPTPTPSTPLNPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSIPSTP----- 120

Query: 121 PSTPFIGTCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNLLQALSNTRTDGFG 180
           P  PF GTCNYWLNHPGMIWGVLGW GTLGN FGATN+PGFGTNLNLLQALSNTRTDGFG
Sbjct: 121 PPAPFTGTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRTDGFG 180

Query: 181 ALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIFKLANEGKIK 236
           A+LREG+ASYLNSLA+N FPFTTKQVR+SFVSALSSN+AAADQA +FKLANEGK+K
Sbjct: 181 AILREGTASYLNSLANNSFPFTTKQVRSSFVSALSSNKAAADQAKVFKLANEGKLK 230

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BLAST of Lcy07g013540 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.5e-100
Identity = 202/239 (84.52%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MRSKQASALLFTLLAGLLS SL+IPVLST+I DQKSYYSP DPH+G+PPSGSH +PIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPSTP 120
           HG GGT PHYSTPTPSTPS    GGGYYNPPSS GGSPP+ PVDPGTPSTPSTPS PSTP
Sbjct: 61  HGNGGT-PHYSTPTPSTPS---GGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPSTP 120

Query: 121 STPFIG----TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNLLQALSNTRTD 180
           STP I     TCNYWLNHPG+IWGVLGW GTLGN FGATN+PGFGTNLNLLQALSNTR D
Sbjct: 121 STPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRND 180

Query: 181 GFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIFKLANEGKIK 236
           G+GALLREG+ASYLNSLASNRFP+TTKQVR SFVSALSSN+AA DQAN FKLANEGKIK
Sbjct: 181 GYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 234

[Close]

BLAST of Lcy07g013540 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.5e-100
Identity = 201/240 (83.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MRSKQ SAL+FTLLAGLLS SL+IPVLST+IADQKSYYSP DPH+G+PPSGSHS+P+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPS-GGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HG GGT PHYSTPTPSTPS PPS GGGYYNPPSS GGSPP+ PVDPGTPSTPSTPS PST
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPFIG----TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNLLQALSNTRT 180
           P+TP I     TC YWLNHPG+IWGVLGW GTLGN FGATN+PGFGTNLNLLQALSNTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIFKLANEGKIK 236
           DG+GALLREG+ASYLNSLASNRFP+TTKQVR SFVSALSSN+AA +QAN FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 238

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BLAST of Lcy07g013540 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 401.0 bits (1029), Expect = 7.3e-108
Identity = 213/241 (88.38%), Postives = 223/241 (92.53%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYS-PSDPHAGTPPSGSHSNPIPP 60
           MR+KQAS LLFTLLAGLLS SL+IPV ST+IADQKSYYS PSDPH+GTPP+GSHS+PIPP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGYGGTPPHYSTPTPSTPSKPP-SGGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPS 120
           SHGYGG+PPHYSTPTPSTPSKPP SGGGYYNPPSSGGGSPPT PVDPGTPSTPSTP  PS
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 TPSTPFIG----TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNLLQALSNTR 180
           TPSTP I     TCNYWLNHPGMIWGVLGW GTLGN FGATN+PGFGTNLNLLQALSNTR
Sbjct: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180

Query: 181 TDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIFKLANEGKI 236
           TDGFGALLREG+ASYLNSLASNRFPFTTKQVR SFVSALSSN+AAADQAN FKLANEGKI
Sbjct: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKI 240

[Close]

BLAST of Lcy07g013540 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 394.4 bits (1012), Expect = 6.8e-106
Identity = 212/249 (85.14%), Postives = 222/249 (89.16%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGG-GYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PT PVDPGTPSTPSTPSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPFIG-------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNL 180
           PSTP                TCN+WLNHPGMIWGVLGW GTLGNCFGATN+PGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIF 236
           LQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQANIF
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of Lcy07g013540 vs. NCBI nr
Match: XP_022970795.1 (protodermal factor 1-like [Cucurbita maxima])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 213/252 (84.52%), Postives = 222/252 (88.10%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSG-GGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PT PVDPGTPSTPSTPSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPFIG----------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTN 180
           PSTP                   TCN+WLNHPGMIWGVLGW GTLGNCFGATN+PGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQA 236
           LNLLQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

[Close]

BLAST of Lcy07g013540 vs. NCBI nr
Match: KAG6604731.1 (Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 211/249 (84.74%), Postives = 221/249 (88.76%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSK-PPSGGGYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTP+K P SG GYYNPPS  GGS PT PVDPGTPSTPSTPSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPFIG-------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTNLNL 180
           PSTP                TCN+WLNHPGMIWGVLGW GTLGNCFGATN+PGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQANIF 236
           LQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQANIF
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of Lcy07g013540 vs. NCBI nr
Match: XP_023534009.1 (protodermal factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 3.7e-104
Identity = 210/252 (83.33%), Postives = 220/252 (87.30%), Query Frame = 0


Query: 1   MRSKQASALLFTLLAGLLSHSLVIPVLSTTIADQKSYYSPSDPHAGTPPSGSHSNPIPPS 60
           MR+KQAS LLFT+LAGLLS SL+IPVLSTTIADQKSYYSP DPHAGTPP+GSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTILAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGG-GYYNPPSSGGGSPPTIPVDPGTPSTPSTPSTPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PT PVDPGTPSTPSTP TPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPRTPST 120

Query: 121 PSTPFIG----------------TCNYWLNHPGMIWGVLGWSGTLGNCFGATNIPGFGTN 180
           PSTP                   TCN+WLNHPGMIWGVLGW GTLGNCF ATN+PGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFRATNVPGFGTN 180

Query: 181 LNLLQALSNTRTDGFGALLREGSASYLNSLASNRFPFTTKQVRASFVSALSSNRAAADQA 236
           LNLLQALSNTR DGFGALLREG+ASYLNSLASNRFPFTTKQV++SFVSALSSNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALSSNRAAADQA 240

[Close]

BLAST of Lcy07g013540 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-46
Identity = 130/302 (43.05%), Postives = 160/302 (52.98%), Query Frame = 0


Query: 7   SALLFTLLAGLLSHSLVIPVLSTTIADQKSYY-SPSDPHAGTPPS--------------- 66
           S  ++ L A LLS  L   V S    D K+YY SP     GTPPS               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSNPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S+P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGYYNPPSSG------------------GGSPPTIPVDPGTPSTPSTPSTP 186
            TPS PPSGG Y +PP                     GGSPPT  +DPGTP TP  P+  
Sbjct: 126 PTPSHPPSGGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA-- 185

Query: 187 STPSTPFIGTCNYWLNHPGMIWGVLGWSGTLGNCFGA----TNIPGFGTNLNLLQALSNT 236
             P  P  GTC+YW NHP +IWG+LGW GT+G  FG     ++IPGF  ++NLLQALSNT
Sbjct: 186 --PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNT 245

The following BLAST results are available for this feature:

BLAST of Lcy07g013540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	1.4e-45	43.05	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of Lcy07g013540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5M6	3.3e-106	85.14	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A6J1I3W1	5.6e-106	84.52	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]
A0A6J1D8U7	4.5e-103	85.17	protodermal factor 1-like OS=Momordica charantia OX=3673 GN=LOC111018104 PE=4 SV...	[more]
A0A5A7UHX0	3.5e-100	84.52	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KF76	3.5e-100	83.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]

BLAST of Lcy07g013540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900371.1	7.3e-108	88.38	protodermal factor 1-like [Benincasa hispida]	[more]
XP_022947015.1	6.8e-106	85.14	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_022970795.1	1.2e-105	84.52	protodermal factor 1-like [Cucurbita maxima]	[more]
KAG6604731.1	3.4e-105	84.74	Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023534009.1	3.7e-104	83.33	protodermal factor 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy07g013540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	1.0e-46	43.05	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..120
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..236
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g013540.1	Lcy07g013540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane