Lcy07g013500 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g013500
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr07: 42620088 .. 42620723 (+)
RNA-Seq Expression	Lcy07g013500
Synteny	Lcy07g013500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAAAAGATAGATGGATCCTTCTGAGTAGAAGTCGAGATATCAATATGGAACTTATTTGCGTTGGAGCTTGGGCAGTCTGGAACGACATAAATCACATGATTCACAACCGTCCTATTCCAAATATTGAGGTTCGATGTGCGTGGATTCTTGATTACTTGGCTGATTACCATAAGGCTAACCAGGTGGTATCCAAATCTATTTTGTCATTGGAAGATTTTTATGAAATGATTGTTAAAGGGGAGGACATAATCATGCACACGGATGCGGCGTTTGACCCGGTAAATCGGAAATCCGGTCTTGGAATTGTTTTTAGAGACAAAGAGGGTGTTCTGCAGGCAGGGCTAGCTTGGCCATCCCATATTTGCACAACCCCTATTTGTGCTGAAGCAGCGGCAGTTCTGGAAGGGTTATGTTTTGCGCATCGTCTGAATGTACAAAGAGTGACGGTTATGTCTGATTCTCTAGCCTTGGTTAAAGCTATCCAGGGTGGTGGAATTCCGGACACCAGTATCATTTCCATCATGTGGGATATACGTAGTCTAATTACCTCTTTTGATAGGGTTAATTTTATGCATGTGAATCGTCAATTTAATAGGGTGTTCCATGAATTGGCTCAGAGAGGCCTATAG

mRNA sequence

ATGGAGATAAAAGATAGATGGATCCTTCTGAGTAGAAGTCGAGATATCAATATGGAACTTATTTGCGTTGGAGCTTGGGCAGTCTGGAACGACATAAATCACATGATTCACAACCGTCCTATTCCAAATATTGAGGTTCGATGTGCGTGGATTCTTGATTACTTGGCTGATTACCATAAGGCTAACCAGGTGGTATCCAAATCTATTTTGTCATTGGAAGATTTTTATGAAATGATTGTTAAAGGGGAGGACATAATCATGCACACGGATGCGGCGTTTGACCCGGTAAATCGGAAATCCGGTCTTGGAATTGTTTTTAGAGACAAAGAGGGTGTTCTGCAGGCAGGGCTAGCTTGGCCATCCCATATTTGCACAACCCCTATTTGTGCTGAAGCAGCGGCAGTTCTGGAAGGGTTATGTTTTGCGCATCGTCTGAATGTACAAAGAGTGACGGTTATGTCTGATTCTCTAGCCTTGGTTAAAGCTATCCAGGGTGGTGGAATTCCGGACACCAGTATCATTTCCATCATGTGGGATATACGTAGTCTAATTACCTCTTTTGATAGGGTTAATTTTATGCATGTGAATCGTCAATTTAATAGGGTGTTCCATGAATTGGCTCAGAGAGGCCTATAG

Coding sequence (CDS)

ATGGAGATAAAAGATAGATGGATCCTTCTGAGTAGAAGTCGAGATATCAATATGGAACTTATTTGCGTTGGAGCTTGGGCAGTCTGGAACGACATAAATCACATGATTCACAACCGTCCTATTCCAAATATTGAGGTTCGATGTGCGTGGATTCTTGATTACTTGGCTGATTACCATAAGGCTAACCAGGTGGTATCCAAATCTATTTTGTCATTGGAAGATTTTTATGAAATGATTGTTAAAGGGGAGGACATAATCATGCACACGGATGCGGCGTTTGACCCGGTAAATCGGAAATCCGGTCTTGGAATTGTTTTTAGAGACAAAGAGGGTGTTCTGCAGGCAGGGCTAGCTTGGCCATCCCATATTTGCACAACCCCTATTTGTGCTGAAGCAGCGGCAGTTCTGGAAGGGTTATGTTTTGCGCATCGTCTGAATGTACAAAGAGTGACGGTTATGTCTGATTCTCTAGCCTTGGTTAAAGCTATCCAGGGTGGTGGAATTCCGGACACCAGTATCATTTCCATCATGTGGGATATACGTAGTCTAATTACCTCTTTTGATAGGGTTAATTTTATGCATGTGAATCGTCAATTTAATAGGGTGTTCCATGAATTGGCTCAGAGAGGCCTATAG

Protein sequence

MEIKDRWILLSRSRDINMELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEMIVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEGLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQFNRVFHELAQRGL

Homology

[Close]

BLAST of Lcy07g013500 vs. ExPASy TrEMBL
Match: A0A5B6UVQ2 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_028674 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 54/192 (28.12%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 19   ELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEM 78
            E+  V  WA+W + N + H      +    A+I  Y A+  +  + + K    +++    
Sbjct: 977  EIKAVNYWAIWYNRNKIYHEGSRGQVNEMLAFIKAYYAEISELGE-LPKQANGIQEKRWK 1036

Query: 79   IVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEG 138
              +G  I ++ DA F+    KS  GI+ R+KEG++ A   +P      P   EA A L+ 
Sbjct: 1037 PPEGNIIKLNFDAYFNQNMEKSVSGIIARNKEGLVMAACTYPWDNILDPTTTEARACLQA 1096

Query: 139  LCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQ 198
            +  A  +  Q + V  DSL ++K I       ++I +++ +I   +  F  +NF HV R+
Sbjct: 1097 IIMAEEMGFQEICVEGDSLTIIKQINSLEDDRSNINNLIKEIMGRLPKFRVLNFRHVPRE 1156

Query: 199  FNRVFHELAQRG 211
             NR  HE+A  G
Sbjct: 1157 ANRAAHEMASEG 1167

[Close]

BLAST of Lcy07g013500 vs. ExPASy TrEMBL
Match: A0A7N2MTJ9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14
Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = 0


Query: 7   WILLSRSR-DIN--MELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQ 66
           W +L+  R D+N   +L+C+ AWA+W++ N + H     +      W   Y+ +Y  A +
Sbjct: 109 WYMLTVERSDVNEVAKLVCI-AWAMWHNRNEIRHGGKRRSGAELVRWASQYMEEYKAATE 168

Query: 67  VVSKSILSLEDFYEMIVKGEDII-MHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSH 126
           ++    +  +     I   E+I  ++ D A     +  G+G++ RD++G L+A L+    
Sbjct: 169 MLVCKAMVADGVRSWIPPSENIFKINVDGAVFADQKAVGVGVIIRDEKGRLEAALSKKIL 228

Query: 127 ICTTPICAEAAAVLEGLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRS 186
                + AEA A  +GL FA  + +    +  DSL +  A+     P +S+ +++  I+ 
Sbjct: 229 APLGAVEAEAMAYEQGLMFARDIGIHNFIIEGDSLIIYHALCESSNPPSSVAAVVQGIQE 288

Query: 187 LITSFDRVNFMHVNRQFNRVFHELAQ 209
           +   F  V F HV RQ N+  H LA+
Sbjct: 289 MCREFHGVMFSHVRRQGNQPAHLLAK 313

[Close]

BLAST of Lcy07g013500 vs. ExPASy TrEMBL
Match: A0A5B6VU56 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_023101 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.6e-14
Identity = 50/192 (26.04%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 19  ELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEM 78
           E+  +  WA+W + N + H      +    A+I  Y A+  +  + +SK     ++    
Sbjct: 244 EIKAISYWAIWYNSNKVYHEGAKGQVNDLLAFIKAYYAEITELGE-LSKQTSGNQERRWN 303

Query: 79  IVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEG 138
             +   I ++ DA+F+    KS  G++ R+ EG++     +P      PI AEA A L+ 
Sbjct: 304 PPERNTIKLNFDASFNQNMEKSVSGVIARNNEGLVMVACTYPWDYTPDPITAEARACLQA 363

Query: 139 LCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQ 198
           +  A  +  Q + V  DSL ++K +       ++I +++  IR  +  F   +F H+ R+
Sbjct: 364 IIMAEEMGFQEICVEGDSLTIIKKVNSLEDDRSNISNLIKKIRGRLPKFRATSFRHIPRE 423

Query: 199 FNRVFHELAQRG 211
            NR  HE+A+ G
Sbjct: 424 ANRAAHEMAREG 434

[Close]

BLAST of Lcy07g013500 vs. ExPASy TrEMBL
Match: A0A5B6UWP0 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_012772 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-13
Identity = 54/194 (27.84%), Postives = 98/194 (50.52%), Query Frame = 0


Query: 18  MELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYE 77
           + L C G W +W   N +++ R +         I  Y+++  +A +V +     LE  ++
Sbjct: 724 IRLFCCGLWFIWFSRNSLLYERKLLTGAEIVRKITSYVSEL-EALRVGNGLPRILESSFQ 783

Query: 78  MIVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLE 137
           +  +G  +++  DAAFD    KS  G++ RD+EGV+ A  A   H   +P  AEA A L+
Sbjct: 784 IHSRGR-VMIQFDAAFDGQVHKSATGLLVRDEEGVILASKAIIHHNIASPFTAEAYAGLQ 843

Query: 138 GLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNR 197
                  +++ RV +M DS  ++K  Q   I  + I +I+ DI + ++++  + F  + +
Sbjct: 844 VAKLGIMMSLNRVLIMGDSKTVIKKCQSKNIDKSIIRAIIRDIHNHLSTYQEIEFTFIPK 903

Query: 198 QFNRVFHELAQRGL 212
             NR  H +A+  L
Sbjct: 904 LENRFAHTIAKEAL 915

[Close]

BLAST of Lcy07g013500 vs. ExPASy TrEMBL
Match: A0A5B6V4L7 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.9e-13
Identity = 47/191 (24.61%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 23  VGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEMIVK- 82
           +  WA+W + N + H      +      ++ ++  Y+     + + + +  +    + K 
Sbjct: 277 IAYWAIWYNRNKLYHE----GVREHVNDVIGFIKAYYSEISCIGERLRTTNESTAPVWKP 336

Query: 83  -GEDII-MHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEGL 142
              DII ++ DA+F+ + R S  GI+ R+KEG+  A   +P      P+ AEA A L+ +
Sbjct: 337 PANDIIKINFDASFNRLTRCSNSGIIARNKEGLTMAACTFPWENIPNPVMAEARACLQAI 396

Query: 143 CFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQF 202
             A  +  Q V +  D+L++++ ++      + I +++ +I+  + +F  V+F +V R+ 
Sbjct: 397 IMAEEMGFQDVCIEGDALSVIRKLKAAEEDRSCISNLIKEIKGKVVNFRSVSFKYVPREA 456

Query: 203 NRVFHELAQRG 211
           N+V H +AQ G
Sbjct: 457 NKVAHAMAQEG 463

[Close]

BLAST of Lcy07g013500 vs. NCBI nr
Match: KAA3462160.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-14
Identity = 54/192 (28.12%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 19   ELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEM 78
            E+  V  WA+W + N + H      +    A+I  Y A+  +  + + K    +++    
Sbjct: 977  EIKAVNYWAIWYNRNKIYHEGSRGQVNEMLAFIKAYYAEISELGE-LPKQANGIQEKRWK 1036

Query: 79   IVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEG 138
              +G  I ++ DA F+    KS  GI+ R+KEG++ A   +P      P   EA A L+ 
Sbjct: 1037 PPEGNIIKLNFDAYFNQNMEKSVSGIIARNKEGLVMAACTYPWDNILDPTTTEARACLQA 1096

Query: 139  LCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQ 198
            +  A  +  Q + V  DSL ++K I       ++I +++ +I   +  F  +NF HV R+
Sbjct: 1097 IIMAEEMGFQEICVEGDSLTIIKQINSLEDDRSNINNLIKEIMGRLPKFRVLNFRHVPRE 1156

Query: 199  FNRVFHELAQRG 211
             NR  HE+A  G
Sbjct: 1157 ANRAAHEMASEG 1167

[Close]

BLAST of Lcy07g013500 vs. NCBI nr
Match: XP_019172068.1 (PREDICTED: uncharacterized protein LOC109167502 [Ipomoea nil])

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-14
Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 0


Query: 9    LLSRSRDINMELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKS 68
            + S   D ++ LI    W +W   N  + N  I N    C  + +++ ++ K N     +
Sbjct: 1134 IFSSKSDADICLIISICWKLWEARNEKLWNHTILNASFICLSVKNFIFEWPKVNAYTVSN 1193

Query: 69   ILSLEDFYEMIVKGEDII-MHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTP 128
              S +           ++ ++ DAA D  N++ G G + RD  G L A    P      P
Sbjct: 1194 TRSTDSLTSWTRPPHGMLKLNVDAALDSANKRMGFGFILRDHTGALVAARRLPWFSLHKP 1253

Query: 129  ICAEAAAVLEGLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSF 188
              AEA AV E L +    N+  V + +D L +V +I      ++S   ++ D+RS+   F
Sbjct: 1254 NEAEAIAVREALKWIRGTNIDNVLLETDCLQVVNSISVSHAFNSSFDLLVNDVRSIAAVF 1313

Query: 189  DRVNFMHVNRQFNRVFHELAQRGL 212
              + F+   R  NRV H LA+  L
Sbjct: 1314 SNLGFLFAKRSANRVAHTLAREAL 1337

[Close]

BLAST of Lcy07g013500 vs. NCBI nr
Match: KAA3472633.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-13
Identity = 50/192 (26.04%), Postives = 92/192 (47.92%), Query Frame = 0


Query: 19  ELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYEM 78
           E+  +  WA+W + N + H      +    A+I  Y A+  +  + +SK     ++    
Sbjct: 244 EIKAISYWAIWYNSNKVYHEGAKGQVNDLLAFIKAYYAEITELGE-LSKQTSGNQERRWN 303

Query: 79  IVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEG 138
             +   I ++ DA+F+    KS  G++ R+ EG++     +P      PI AEA A L+ 
Sbjct: 304 PPERNTIKLNFDASFNQNMEKSVSGVIARNNEGLVMVACTYPWDYTPDPITAEARACLQA 363

Query: 139 LCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQ 198
           +  A  +  Q + V  DSL ++K +       ++I +++  IR  +  F   +F H+ R+
Sbjct: 364 IIMAEEMGFQEICVEGDSLTIIKKVNSLEDDRSNISNLIKKIRGRLPKFRATSFRHIPRE 423

Query: 199 FNRVFHELAQRG 211
            NR  HE+A+ G
Sbjct: 424 ANRAAHEMAREG 434

[Close]

BLAST of Lcy07g013500 vs. NCBI nr
Match: KAA3458125.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13
Identity = 54/194 (27.84%), Postives = 98/194 (50.52%), Query Frame = 0


Query: 18  MELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVSKSILSLEDFYE 77
           + L C G W +W   N +++ R +         I  Y+++  +A +V +     LE  ++
Sbjct: 724 IRLFCCGLWFIWFSRNSLLYERKLLTGAEIVRKITSYVSEL-EALRVGNGLPRILESSFQ 783

Query: 78  MIVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLE 137
           +  +G  +++  DAAFD    KS  G++ RD+EGV+ A  A   H   +P  AEA A L+
Sbjct: 784 IHSRGR-VMIQFDAAFDGQVHKSATGLLVRDEEGVILASKAIIHHNIASPFTAEAYAGLQ 843

Query: 138 GLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNR 197
                  +++ RV +M DS  ++K  Q   I  + I +I+ DI + ++++  + F  + +
Sbjct: 844 VAKLGIMMSLNRVLIMGDSKTVIKKCQSKNIDKSIIRAIIRDIHNHLSTYQEIEFTFIPK 903

Query: 198 QFNRVFHELAQRGL 212
             NR  H +A+  L
Sbjct: 904 LENRFAHTIAKEAL 915

[Close]

BLAST of Lcy07g013500 vs. NCBI nr
Match: XP_040957923.1 (uncharacterized protein LOC121222088 [Gossypium hirsutum])

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-13
Identity = 53/205 (25.85%), Postives = 92/205 (44.88%), Query Frame = 0


Query: 7   WILLSRSRDINMELICVGAWAVWNDINHMIHNRPIPNIEVRCAWILDYLADYHKANQVVS 66
           W+  +R  D  + L C   W +W   N +++ R   +       I DY+ +     +   
Sbjct: 74  WV-FARGTDEQLRLFCCNLWFIWFSRNQLVYERKNMSGSEIVRKISDYITELAVTKE--G 133

Query: 67  KSILSLEDFYEMIVKGEDIIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTT 126
           K  L   +F + + +    I+H DAAF+  + +S  G++  ++EGVL A  A        
Sbjct: 134 KITLLSHEFSQQVSRSGRTIIHFDAAFNSQDFRSASGLIAWNEEGVLLATQAVTHSNVAN 193

Query: 127 PICAEAAAVLEGLCFAHRLNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITS 186
           P   EA A L  +    RL V R+ +M DS  ++K  +      + I +I+ DI++   S
Sbjct: 194 PFTVEAYAGLHAIKLGIRLGVNRIDIMGDSRTIIKKCKSKNTDKSVIGAIIRDIQTHCNS 253

Query: 187 FDRVNFMHVNRQFNRVFHELAQRGL 212
           F  + F  + +  N   H +A+  L
Sbjct: 254 FQEIEFSFIQKAKNIYAHTIAKEAL 275

[Close]

BLAST of Lcy07g013500 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 39/127 (30.71%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 85  IIMHTDAAFDPVNRKSGLGIVFRDKEGVLQAGLAWPSHICTTPICAEAAAVLEGLCFAHR 144
           + + TDAA+    +  G G V R+   +        +     P+ AEA A+   L +A  
Sbjct: 31  VTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLALQYAQS 90

Query: 145 LNVQRVTVMSDSLALVKAIQGGGIPDTSIISIMWDIRSLITSFDRVNFMHVNRQFNRVFH 204
           + + ++++ SDS  L+ AI     P T    I++DI +L   F  V+F  V R  NRV  
Sbjct: 91  IGITKLSMASDSQQLITAITSES-PSTEFYGIIFDILNLSLGFADVSFSFVPRSENRVAD 150

Query: 205 ELAQRGL 212
           ELA+  L
Sbjct: 151 ELAKSSL 156

The following BLAST results are available for this feature:

BLAST of Lcy07g013500 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g013500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6UVQ2	1.5e-14	28.13	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_028674 PE=4 SV=1	[more]
A0A7N2MTJ9	5.8e-14	27.18	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5B6VU56	7.6e-14	26.04	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_023101 PE=4 SV=1	[more]
A0A5B6UWP0	1.3e-13	27.84	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_012772 PE=4 SV=1	[more]
A0A5B6V4L7	2.9e-13	24.61	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1	[more]

BLAST of Lcy07g013500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA3462160.1	3.2e-14	28.13	reverse transcriptase [Gossypium australe]	[more]
XP_019172068.1	9.2e-14	26.96	PREDICTED: uncharacterized protein LOC109167502 [Ipomoea nil]	[more]
KAA3472633.1	1.6e-13	26.04	reverse transcriptase [Gossypium australe]	[more]
KAA3458125.1	2.7e-13	27.84	reverse transcriptase [Gossypium australe]	[more]
XP_040957923.1	4.6e-13	25.85	uncharacterized protein LOC121222088 [Gossypium hirsutum]	[more]

BLAST of Lcy07g013500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09490.1	2.1e-08	30.71	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 89..209 e-value: 1.1E-22 score: 80.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 83..211 e-value: 3.4E-18 score: 67.9
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 89..210
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 89..207 e-value: 1.35678E-19 score: 78.51
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 84..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g013500.1	Lcy07g013500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity