Lcy07g012470 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g012470
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr07: 41649975 .. 41650423 (+)
RNA-Seq ExpressionLcy07g012470
SyntenyLcy07g012470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGAAAAATAAGCCATTAGCTTCAAGATGAACAATTCAGACTACAAAGACCAGAAATCAGACATGTTAAACACTAACCAGACTAGATCATCAAAATTTAATGAAGAACAAATTAATGTCAAGAAATTGAAAGAAAAAAAAAATTAATGATAGGATCGAAGAACAGATCCACAAAAGGTACATATGAGGGCTCTCCAGGATTTCCAGTAAAAGGGAACGTGACAGAATCTGGTGGCGGTTTTCATATCGGCTACACTGGCTCCTCCGCCGCACCTGGAGCAAAGTCCGGGCGCCGGCCTACTCCGCCGTACCCTCCGCTTCTGATCCACCAGAAAGCAAAAGCAAACCATGGAGGTCGTCGGAACTCCGATCACTTGGGGCAGCTACAGCTGGTTCGGTTGGTTGGGTATGACAGTAGTGAAGTAAGTGACCGTATTTATAGGGCATGA

mRNA sequence

TTAGAAAAATAAGCCATTAGCTTCAAGATGAACAATTCAGACTACAAAGACCAGAAATCAGACATGTTAAACACTAACCAGACTAGATCATCAAAATTTAATGAAGAACAAATTAATGTCAAGAAATTGAAAGAAAAAAAAAATTAATGATAGGATCGAAGAACAGATCCACAAAAGGTACATATGAGGGCTCTCCAGGATTTCCAGTAAAAGGGAACGTGACAGAATCTGGTGGCGGTTTTCATATCGGCTACACTGGCTCCTCCGCCGCACCTGGAGCAAAGTCCGGGCGCCGGCCTACTCCGCCGTACCCTCCGCTTCTGATCCACCAGAAAGCAAAAGCAAACCATGGAGGTCGTCGGAACTCCGATCACTTGGGGCAGCTACAGCTGGTTCGGTTGGTTGGGTATGACAGTAGTGAAGTAAGTGACCGTATTTATAGGGCATGA

Coding sequence (CDS)

ATGATAGGATCGAAGAACAGATCCACAAAAGGTACATATGAGGGCTCTCCAGGATTTCCAGTAAAAGGGAACGTGACAGAATCTGGTGGCGGTTTTCATATCGGCTACACTGGCTCCTCCGCCGCACCTGGAGCAAAGTCCGGGCGCCGGCCTACTCCGCCGTACCCTCCGCTTCTGATCCACCAGAAAGCAAAAGCAAACCATGGAGGTCGTCGGAACTCCGATCACTTGGGGCAGCTACAGCTGGTTCGGTTGGTTGGGTATGACAGTAGTGAAGTAAGTGACCGTATTTATAGGGCATGA

Protein sequence

MIGSKNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHGGRRNSDHLGQLQLVRLVGYDSSEVSDRIYRA
Homology
BLAST of Lcy07g012470 vs. ExPASy TrEMBL
Match: A0A6A4LFF8 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_11978 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-09
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 15  GSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHGGRRN 74
           G  G  V+G+V E GGG H+G  G +AAPGA  GRR TPP+ PLL+HQK +ANH  RR+
Sbjct: 76  GRHGLSVEGHVAEPGGGLHVGDAGPAAAPGATPGRRLTPPHFPLLVHQKTEANHDRRRS 134

BLAST of Lcy07g012470 vs. ExPASy TrEMBL
Match: A0A5D3BSN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00560 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 25 VTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHG 70
          +TES  GFHIG  GSSAA GA S RRPTPP+ PLLIH KAK NHG
Sbjct: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHG 45

BLAST of Lcy07g012470 vs. ExPASy TrEMBL
Match: A0A0A0KAZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.6e-07
Identity = 38/75 (50.67%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 25  VTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHGGRRNSDHLGQLQLVR 84
           +TES  GFHIG  GSS A GA S  RPT  + PLLIH KAK NH         G +    
Sbjct: 1   MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENH---------GVVVGAS 60

Query: 85  LVGYDSSEVSDRIYR 100
           LVG +  EVS+ IYR
Sbjct: 61  LVGNEKLEVSEHIYR 66

BLAST of Lcy07g012470 vs. ExPASy TrEMBL
Match: A0A7J0G9W4 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_19g0004350 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.5e-07
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 5  KNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKA 64
          +N STK  +   P  P+K +VT+ GGG H+ + G++AAP A++  R  PP+ PLLIHQ+A
Sbjct: 17 ENSSTKRAHNSFPISPIKRDVTKPGGGSHVRHAGAAAAPRAQARHRLGPPHRPLLIHQEA 76

Query: 65 KANH 69
          +ANH
Sbjct: 77 EANH 80

BLAST of Lcy07g012470 vs. ExPASy TrEMBL
Match: A0A061E4R6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007973 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 2  IGSKNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIH 61
          + SKN STK TY  SP FP+K ++ +    FHI YT S  AP AK  RR T  + P LI+
Sbjct: 5  VRSKNCSTKSTYNCSPRFPIKRHIAKPCRSFHISYTSSPTAPRAKPRRRFTSAHFPCLIN 64

Query: 62 QKAKANH 69
          +KA+  H
Sbjct: 65 EKAETYH 71

BLAST of Lcy07g012470 vs. NCBI nr
Match: QHO56407.1 (uncharacterized protein DS421_3g73450 [Arachis hypogaea])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 1  MIGSKNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLI 60
          M+G+KN + K    GSP   VKGN  + GGGFH+G+  S+AAP A S RR  PPY P L+
Sbjct: 1  MVGAKNSTAKSADNGSPRLAVKGNTAKPGGGFHVGHASSTAAPAAYSRRRFAPPYFPRLV 60

Query: 61 HQKAKANH 69
          HQ+ +A H
Sbjct: 61 HQETEAYH 68

BLAST of Lcy07g012470 vs. NCBI nr
Match: KAE9456102.1 (hypothetical protein C3L33_11978, partial [Rhododendron williamsianum])

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 15  GSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHGGRRN 74
           G  G  V+G+V E GGG H+G  G +AAPGA  GRR TPP+ PLL+HQK +ANH  RR+
Sbjct: 76  GRHGLSVEGHVAEPGGGLHVGDAGPAAAPGATPGRRLTPPHFPLLVHQKTEANHDRRRS 134

BLAST of Lcy07g012470 vs. NCBI nr
Match: KAA0047885.1 (hypothetical protein E6C27_scaffold133G001590 [Cucumis melo var. makuwa] >TYK02164.1 hypothetical protein E5676_scaffold388G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 25 VTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQKAKANHG 70
          +TES  GFHIG  GSSAA GA S RRPTPP+ PLLIH KAK NHG
Sbjct: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHG 45

BLAST of Lcy07g012470 vs. NCBI nr
Match: TKY48832.1 (Notchless protein-like [Spatholobus suberectus])

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 4  SKNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIHQK 63
          +KN ST+    GSP FP++G++ + GG  H+G  GS+AA GA   RR  PP+ P L+HQK
Sbjct: 6  AKNGSTESANNGSPRFPIEGDIAKPGGRLHVGDAGSAAAAGANPRRRLAPPHLPPLVHQK 65

Query: 64 AKANH 69
           +A+H
Sbjct: 66 TEAHH 70

BLAST of Lcy07g012470 vs. NCBI nr
Match: KAF7823035.1 (uncharacterized protein G2W53_021179 [Senna tora])

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-07
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 2  IGSKNRSTKGTYEGSPGFPVKGNVTESGGGFHIGYTGSSAAPGAKSGRRPTPPYPPLLIH 61
          + +KN ST+     SP FP++ ++T+S GGFHI   GS+AAP AKSGRR  P + P L+H
Sbjct: 6  VRTKNGSTESADNSSPRFPIERDMTKSSGGFHISNAGSAAAPRAKSGRRLAPLHLPCLVH 65

Query: 62 QKAKANH 69
          ++ + +H
Sbjct: 66 KETETHH 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A4LFF84.6e-0957.63Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A5D3BSN76.6e-0873.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KAZ75.6e-0750.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1[more]
A0A7J0G9W49.5e-0748.44Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_19g0004350 PE=4 SV=1[more]
A0A061E4R63.1e-0547.76Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_007973 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
QHO56407.11.5e-0951.47uncharacterized protein DS421_3g73450 [Arachis hypogaea][more]
KAE9456102.19.5e-0957.63hypothetical protein C3L33_11978, partial [Rhododendron williamsianum][more]
KAA0047885.11.4e-0773.33hypothetical protein E6C27_scaffold133G001590 [Cucumis melo var. makuwa] >TYK021... [more]
TKY48832.12.3e-0747.69Notchless protein-like [Spatholobus suberectus][more]
KAF7823035.16.8e-0746.27uncharacterized protein G2W53_021179 [Senna tora][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g012470.1Lcy07g012470.1mRNA