Lcy07g012310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g012310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Wound-responsive family protein
Location	Chr07: 41574629 .. 41575428 (+)
RNA-Seq Expression	Lcy07g012310
Synteny	Lcy07g012310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCCAAAACCACCCTAGCTCCAATACCTGATCCGGATTTCCAAAATACCATTTCGGAGGTCTAATCTGTCTTATATAAAGTAGGCTTTCCCTTTGCTCTTCTCTCGAAGACGAAAGGATCGACGCCGACAAACACTTTGTCCATTCTGCAAACTCTCTTCTTCTTTCTCAGATCGAAAGTTATTTTAAAATGAGTTATCTCGGTCGGACGTGGATGACGGCGAGTGTAGCCGTAGTCCAGGGCGGCCAATCCGACGGCCGCCTCGGCACGACAAAGGGACTCGTTTCTCTGCACCAAAACCTTAGGGTTTCGTCTTCGGAAACAACCGCCGCGGATCTCCCCCCAATTTCAACTGCGACGATTCACTCGAATCGCGATGGCGAGGAGAAGAGGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTCAACTGCTGGGGCCAGGGCTGAGATTTGAGAGAACGGCAAAGGACAGGAGCAATCGAGAGTTTTTGCCCTTGTTTGGGGCTTTCTCCTGATCGGAAACAAGGATTGGCCCTGGAGTTCTTGACCTAATTTTATGGAACGAGCTGATCGTTGATTGTAAATCATCGGAACCGGGAAGCGAGTGATCATGTACTTTGAAATCCTGGAGAAGGATTTTTTGTTGCGTGTAATTAAACCAAATGTGTACAGGAAAGAAATGAAACTGTTTGGTGTTTAATGTTCTTCTCTCAATGTTGTTTATGATTCCATATTTGGGATCCTATCCTTTTGTGATGGAGTTAATTGATCTAAACCGAAACGGAATTATTC

mRNA sequence

AAAAACCCCAAAACCACCCTAGCTCCAATACCTGATCCGGATTTCCAAAATACCATTTCGGAGGTCTAATCTGTCTTATATAAAGTAGGCTTTCCCTTTGCTCTTCTCTCGAAGACGAAAGGATCGACGCCGACAAACACTTTGTCCATTCTGCAAACTCTCTTCTTCTTTCTCAGATCGAAAGTTATTTTAAAATGAGTTATCTCGGTCGGACGTGGATGACGGCGAGTGTAGCCGTAGTCCAGGGCGGCCAATCCGACGGCCGCCTCGGCACGACAAAGGGACTCGTTTCTCTGCACCAAAACCTTAGGGTTTCGTCTTCGGAAACAACCGCCGCGGATCTCCCCCCAATTTCAACTGCGACGATTCACTCGAATCGCGATGGCGAGGAGAAGAGGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTCAACTGCTGGGGCCAGGGCTGAGATTTGAGAGAACGGCAAAGGACAGGAGCAATCGAGAGTTTTTGCCCTTGTTTGGGGCTTTCTCCTGATCGGAAACAAGGATTGGCCCTGGAGTTCTTGACCTAATTTTATGGAACGAGCTGATCGTTGATTGTAAATCATCGGAACCGGGAAGCGAGTGATCATGTACTTTGAAATCCTGGAGAAGGATTTTTTGTTGCGTGTAATTAAACCAAATGTGTACAGGAAAGAAATGAAACTGTTTGGTGTTTAATGTTCTTCTCTCAATGTTGTTTATGATTCCATATTTGGGATCCTATCCTTTTGTGATGGAGTTAATTGATCTAAACCGAAACGGAATTATTC

Coding sequence (CDS)

ATGAGTTATCTCGGTCGGACGTGGATGACGGCGAGTGTAGCCGTAGTCCAGGGCGGCCAATCCGACGGCCGCCTCGGCACGACAAAGGGACTCGTTTCTCTGCACCAAAACCTTAGGGTTTCGTCTTCGGAAACAACCGCCGCGGATCTCCCCCCAATTTCAACTGCGACGATTCACTCGAATCGCGATGGCGAGGAGAAGAGGCAAGCCGATGAGTCTCTTCGCCGAGTTATGTACTTCAACTGCTGGGGCCAGGGCTGA

Protein sequence

MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHSNRDGEEKRQADESLRRVMYFNCWGQG

Homology

[Close]

BLAST of Lcy07g012310 vs. ExPASy TrEMBL
Match: A0A5A7TY19 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001960 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MSYLG---RTWMTASVAVVQGGQSD-GRLGTTKGLVSLHQNLRVSSSETTAADLPPISTA 60
          MSYLG   R WM ASVAVVQ GQSD G    TKG+VSL Q LRVSS+ETTA +L PIS+A
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 TIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
                D + +   +ESLRRVMY NCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of Lcy07g012310 vs. ExPASy TrEMBL
Match: A0A0A0KAY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G123980 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-11
Identity = 51/92 (55.43%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1  MSYLG-----RTWMTASVAVVQGGQSD-GRLGTTKGLVSLHQNLRVSSSETTAADLPPIS 60
          MSYLG     R WMTASVAVVQGGQSD G    TKG++SL Q LRV S E          
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLSGE---------- 60

Query: 61 TATIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
             I    DGE      ESLRRVMY NCWGQG
Sbjct: 61 --KIKREADGE------ESLRRVMYLNCWGQG 74

[Close]

BLAST of Lcy07g012310 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.2e-11
Identity = 48/93 (51.61%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPIS------ 60
          MSYL R WM ASVAVVQG    GR     GL SL    R   S + +ADL PIS      
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGR-KVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLD 60

Query: 61 -TATIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
              + S+   E  RQA+ESLRRVMY NCWGQG
Sbjct: 61 FAGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of Lcy07g012310 vs. ExPASy TrEMBL
Match: A0A6A1VB48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHS 60
          MSY+ R WM ASVAVVQG +  G      G+ SL    R   S   ++D+ P+S   + S
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQG-CKLKSGVDSLQHGRRKFFSGNDSSDIRPLS-GMMGS 60

Query: 61 NRDG--------EEKRQADESLRRVMYFNCWGQG 87
          + DG        E +RQADESLRRVMY NCWGQG
Sbjct: 61 DLDGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

[Close]

BLAST of Lcy07g012310 vs. ExPASy TrEMBL
Match: A0A058ZZ35 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00912 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHS 60
          MSYL R W+   VA VQ G SD  +    G+ S+HQ  R   S   AAD+ P++ A + S
Sbjct: 1  MSYLNRAWVAVGVAAVQ-GHSDQGMRLKYGVKSIHQGKRRLFSGVEAADVRPLAGA-VGS 60

Query: 61 NRDG----------EEKRQADESLRRVMYFNCWGQ 86
            DG          E +RQADESLR VMY NCWGQ
Sbjct: 61 ELDGAAARGGPDGDERRRQADESLRNVMYLNCWGQ 93

[Close]

BLAST of Lcy07g012310 vs. NCBI nr
Match: KAG6604822.1 (Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1   MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHS 60
           MSYLGR WM ASVAVV GGQSDGR G+ +G+++LH+N   + +   A DL   STAT HS
Sbjct: 279 MSYLGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRN---AETTAVAVDLRQFSTATSHS 338

Query: 61  NRDGEEKRQADESLRRVMYFNCWGQG 87
           NRDG+EK QADESLRRVMYFNCWGQG
Sbjct: 339 NRDGDEKGQADESLRRVMYFNCWGQG 361

[Close]

BLAST of Lcy07g012310 vs. NCBI nr
Match: KAG7034937.1 (hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHS 60
          MSYLGR WM ASVAVV GGQSDGR G+ +G+++LH+N   + +   A DL   STAT HS
Sbjct: 1  MSYLGRVWMAASVAVVHGGQSDGRHGSAEGILTLHRN---AETTAVAVDLRQFSTATSHS 60

Query: 61 NRDGEEKRQADESLRRVMYFNCWGQG 87
          NRDG+EK QADESLRRVMYFNCWGQG
Sbjct: 61 NRDGDEKGQADESLRRVMYFNCWGQG 83

[Close]

BLAST of Lcy07g012310 vs. NCBI nr
Match: KAA0047914.1 (wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MSYLG---RTWMTASVAVVQGGQSD-GRLGTTKGLVSLHQNLRVSSSETTAADLPPISTA 60
          MSYLG   R WM ASVAVVQ GQSD G    TKG+VSL Q LRVSS+ETTA +L PIS+A
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 TIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
                D + +   +ESLRRVMY NCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of Lcy07g012310 vs. NCBI nr
Match: KAE8646838.1 (hypothetical protein Csa_020898 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-11
Identity = 51/92 (55.43%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1  MSYLG-----RTWMTASVAVVQGGQSD-GRLGTTKGLVSLHQNLRVSSSETTAADLPPIS 60
          MSYLG     R WMTASVAVVQGGQSD G    TKG++SL Q LRV S E          
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLSGE---------- 60

Query: 61 TATIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
             I    DGE      ESLRRVMY NCWGQG
Sbjct: 61 --KIKREADGE------ESLRRVMYLNCWGQG 74

[Close]

BLAST of Lcy07g012310 vs. NCBI nr
Match: KAE8075854.1 (hypothetical protein FH972_014541 [Carpinus fangiana])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 48/93 (51.61%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPIS------ 60
          MSYL R WM ASVAVVQG    GR     GL SL    R   S + +ADL PIS      
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGR-KVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLD 60

Query: 61 -TATIHSNRDGEEKRQADESLRRVMYFNCWGQG 87
              + S+   E  RQA+ESLRRVMY NCWGQG
Sbjct: 61 FAGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of Lcy07g012310 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 1  MSYLGRTWMTASVAVVQGGQSDGRLGTTKGLVSLHQNLRVSSSETTAADLPPISTATIHS 60
          MSYL + WM AS   VQG    G +    GL S H+  R  SS     DL P++ A +  
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHG-VKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTG 60

Query: 61 NR-DGEEKRQA-----DESLRRVMYFNCWGQG 87
          +    EE+R+      DESLR+VMY NCW QG
Sbjct: 61 DSLPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of Lcy07g012310 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g012310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY19	1.4e-17	62.22	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0KAY5	4.2e-11	55.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G123980 PE=4 SV=1	[more]
A0A5N6RB28	7.2e-11	51.61	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A6A1VB48	2.7e-10	47.87	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1	[more]
A0A058ZZ35	2.3e-09	46.32	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00912 PE=4 SV...	[more]

BLAST of Lcy07g012310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604822.1	6.9e-24	68.60	Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034937.1	6.9e-24	68.60	hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0047914.1	2.8e-17	62.22	wound-responsive family protein [Cucumis melo var. makuwa]	[more]
KAE8646838.1	8.7e-11	55.43	hypothetical protein Csa_020898 [Cucumis sativus]	[more]
KAE8075854.1	1.5e-10	51.61	hypothetical protein FH972_014541 [Carpinus fangiana]	[more]

BLAST of Lcy07g012310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	1.3e-09	42.39	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..85 e-value: 1.9E-12 score: 48.0
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..70
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g012310.1	Lcy07g012310.1	mRNA