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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGGTACTTCAATAGTTTTGACTACTGTGGTGATGTTTCTCTGTATTCCCACCAGGTCATAATGGACGTAGCAAGTCTGTAAAGTGGCACAATCCAAAAGGTGTGCGCCTTAGTCAATTAGAATTTCTTCTATTTACTATAAAATGTCTTGCCTTTTTCGTCAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA mRNA sequence ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA Coding sequence (CDS) ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA Protein sequence MNLVLKNNLTMWSGDNVGVDELIANIKTDKRIKLIPVILLFLVILKGNKMTVSFPRKVKLRNQAQGLPLFRNLRKNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRTGEDE
Homology
BLAST of Lcy07g011700 vs. NCBI nr
Match: KAG6570891.1 (hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05 Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0
Query: 75 KNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFH 134
K +FRQ Q+R + +K+ ++KLPYSR K+RT+SLKI CKNT S SETHTA + P
Sbjct: 5 KRLSFRQHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTSSSSETHTA-QEPQLP 64
Query: 135 PRTGEDE 142
P+ G++E
Sbjct: 65 PKDGKNE 69
BLAST of Lcy07g011700 vs. NCBI nr
Match: KAG7010740.1 (hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04 Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 0
Query: 78 NFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRT 137
+F + Q+R + +K+ ++KLPYSR K+RT+SLKI CKNT S SETHTA + P P+
Sbjct: 81 SFEKHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTFSSSETHTA-QEPQLPPKD 140
Query: 138 GEDE 142
G++E
Sbjct: 141 GKNE 142
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| KAG6570891.1 | 5.2e-05 | 52.24 | hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7010740.1 | 5.8e-04 | 50.00 | hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 122..141 |
Relationships
The following mRNA feature(s) are a part of this gene:
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