Lcy07g009550 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g009550
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr07: 38322566 .. 38323312 (+)
RNA-Seq Expression	Lcy07g009550
Synteny	Lcy07g009550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATCTTCCATTTTCAGACCTTCAATCTCCTCTGTGAATCGCCATTGTTGACGATTCGAAGATCGTGAAATGACTTACTGCTACGGATGTAAACCTCGCTCTTCCGGTCCACTCCCCGGCCCTATCCTTGTGCTTCTCGTCGTTGTCTTCCTCTTGATCGGATTGTCCTCTCTGTTCCCTTCCGAACCTATCGACTTCTCTGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTATACTTGTTCTTGTTCGCTATTTGTCGTCCATGGATTCTTCAACCAGATACTATGGCTGCGCTTGCGGCTGGAAGATGCACTGTCGGTGTGGCCGTGGCGCGTGGTAACTTTATTTAATCGAAATGCGTTTCATGATCCTTATGCCTGTTGTTGTTGTGTAAATTATAGTTCGGTGTTTATGTGATACGCCTGTTTGGTTGTGGAAGTACTGAAGGATTTTGATCGATTGTTGTGACGGTTAAGGATTGAAGGTGTATATGATCTGATGATGTGTTTGTTCTTAGATAACATGATGAGCGGAAAGTTTAATCGAGTTATTTGCTCAATTCATCTTGGTTTGTCGGTTTAGGGATGATTCGTCAACTCTTGACCTTAAACTTTCTGGATTTTAATCTGATTTTGAAGAATGGTAGTAAATAACAGAGAATATTTTTTTTTTTTTTTTTGAACACAAAAATAACAGAGAATTAAGTTATAAATTCACTCGGAGAATTTTATACAT

mRNA sequence

GTTATCTTCCATTTTCAGACCTTCAATCTCCTCTGTGAATCGCCATTGTTGACGATTCGAAGATCGTGAAATGACTTACTGCTACGGATGTAAACCTCGCTCTTCCGGTCCACTCCCCGGCCCTATCCTTGTGCTTCTCGTCGTTGTCTTCCTCTTGATCGGATTGTCCTCTCTGTTCCCTTCCGAACCTATCGACTTCTCTGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTATACTTGTTCTTGTTCGCTATTTGTCGTCCATGGATTCTTCAACCAGATACTATGGCTGCGCTTGCGGCTGGAAGATGCACTGTCGGTGTGGCCGTGGCGCGTGGTAACTTTATTTAATCGAAATGCGTTTCATGATCCTTATGCCTGTTGTTGTTGTGTAAATTATAGTTCGGTGTTTATGTGATACGCCTGTTTGGTTGTGGAAGTACTGAAGGATTTTGATCGATTGTTGTGACGGTTAAGGATTGAAGGTGTATATGATCTGATGATGTGTTTGTTCTTAGATAACATGATGAGCGGAAAGTTTAATCGAGTTATTTGCTCAATTCATCTTGGTTTGTCGGTTTAGGGATGATTCGTCAACTCTTGACCTTAAACTTTCTGGATTTTAATCTGATTTTGAAGAATGGTAGTAAATAACAGAGAATATTTTTTTTTTTTTTTTTGAACACAAAAATAACAGAGAATTAAGTTATAAATTCACTCGGAGAATTTTATACAT

Coding sequence (CDS)

ATGACTTACTGCTACGGATGTAAACCTCGCTCTTCCGGTCCACTCCCCGGCCCTATCCTTGTGCTTCTCGTCGTTGTCTTCCTCTTGATCGGATTGTCCTCTCTGTTCCCTTCCGAACCTATCGACTTCTCTGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTATACTTGTTCTTGTTCGCTATTTGTCGTCCATGGATTCTTCAACCAGATACTATGGCTGCGCTTGCGGCTGGAAGATGCACTGTCGGTGTGGCCGTGGCGCGTGGTAA

Protein sequence

MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIILVLVRYLSSMDSSTRYYGCACGWKMHCRCGRGAW

Homology

[Close]

BLAST of Lcy07g009550 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPR SGPLPGPIL+LL VVF+LI LSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRYLSSMDSSTRYYGCAC--GWKMHCRCGRG-AW 94
          VLVR L+SMDSS RYY C C  GWKMHCRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of Lcy07g009550 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPR SGPLPGPIL+LL VVF+LI LSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRYLSSMDSSTRYYGCAC--GWKMHCRCGRG-AW 94
          VLVR LSSMDSS RYY C C  GWKM+CRCG G AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of Lcy07g009550 vs. ExPASy TrEMBL
Match: A0A2I0LDH6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 3  YCYGCK--PRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK  P S GP+P  +L+ L++  + I LS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRYLSSMDSSTRYYG---CACGWKMHCRC 89
          L +V YLSS+D   ++YG   C   WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of Lcy07g009550 vs. ExPASy TrEMBL
Match: A0A2C9UZU5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.9e-07
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MTYCYGCKPRSS-------GPLPGPILVLLVVVFLLIGLSSLFPSEPI-DFSEFQINWPL 60
          MTY Y  +  +S        PLP P+L++L V+ + +G+S  F  E I + +E QINW L
Sbjct: 1  MTYYYYGRRSNSIFDVFTLNPLPYPVLLILAVISIFLGISWYFSYEEIAETAEMQINWLL 60

Query: 61 LAVPIIILVLVRYLSSMDSS 73
          LA P+++L LVR+LSSM++S
Sbjct: 61 LATPLVLLFLVRWLSSMENS 80

[Close]

BLAST of Lcy07g009550 vs. ExPASy TrEMBL
Match: A0A2P5ECY5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_208260 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEP---IDFSEFQINWPLLAVPI 60
          M YC  C+   S PL  P+++ L VV +L+ L   F  EP   ++  + QINW L+  P+
Sbjct: 1  MGYC-ACRRNESPPL-YPVVLFLSVVAILVALPWFFSQEPVIEVETPKLQINWALIVTPL 60

Query: 61 IILVLVRYLSSMDSSTR-------YYGCACGWKMHCRCGR 91
          ++L LV +LSS++   R       Y  C C  K  C CGR
Sbjct: 61 LLLALVHWLSSVEPRRRPCPMPPPYAMCPCRGKYACGCGR 98

[Close]

BLAST of Lcy07g009550 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 80/95 (84.21%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPR SGPLPGP+L+LL VVF+LIGLSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRYLSSMDSSTRYYGCAC--GWKMHCRCGRGAW 94
          VLVR LS++DSS+RYY C C  GWKM CRCGRGAW
Sbjct: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRGAW 95

[Close]

BLAST of Lcy07g009550 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 4.8e-39
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPR SGPLPGPIL+LL VVF+LI LSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRYLSSMDSSTRYYGCAC--GWKMHCRCGRG-AW 94
          VLVR L+SMDSS RYY C C  GWKMHCRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of Lcy07g009550 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 5.3e-38
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPR SGPLPGPIL+LL VVF+LI LSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRYLSSMDSSTRYYGCAC--GWKMHCRCGRG-AW 94
          VLVR LSSMDSS RYY C C  GWKM+CRCG G AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of Lcy07g009550 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-36
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1  MTYCYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KP  SGPLPGPILVLL VVF+LIGLSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRYLSSMDSSTRYYGCACGWKMHCRCGRGAW 94
          VLVR+LSS+DSS+R+  C  GWKMHCRC  GAW
Sbjct: 61 VLVRFLSSVDSSSRHCACDRGWKMHCRCRHGAW 93

[Close]

BLAST of Lcy07g009550 vs. NCBI nr
Match: PKI78722.1 (hypothetical protein CRG98_000947 [Punica granatum])

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-11
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 3  YCYGCK--PRSSGPLPGPILVLLVVVFLLIGLSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK  P S GP+P  +L+ L++  + I LS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRYLSSMDSSTRYYG---CACGWKMHCRC 89
          L +V YLSS+D   ++YG   C   WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of Lcy07g009550 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 11 SSGPLPGPILVLLVVVFLLIGLSSLFPS--EPIDFSEFQINWPLLAVPIIILVLVRYLSS 70
          S  PLP P+L++L V  + + LSS + S  E  + +E QIN+ LL +P+ ++VLVR+LSS
Sbjct: 15 SLSPLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSS 74

Query: 71 MDSSTRYYG 78
          M++     G
Sbjct: 75 MENPDALLG 82

[Close]

BLAST of Lcy07g009550 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 4  CYGCKPRSSGPLPGPILVLLVVVFLLIGLSSLFPSE-PIDFSEFQINWPLL-AVPIIILV 63
          C  C+  +S   P P++V++ V  +L+ LSS+   E  +   E  ++W LL AVP+ +L 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRYLSSMDSSTR-YYGCACG-WKMHC 87
           VR LS +++S R  Y C CG W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGRWRCVC 91

The following BLAST results are available for this feature:

BLAST of Lcy07g009550 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g009550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6	2.3e-39	86.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1	[more]
A0A5D3BJW1	2.6e-38	85.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2I0LDH6	1.2e-11	44.57	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1	[more]
A0A2C9UZU5	8.9e-07	43.75	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=...	[more]
A0A2P5ECY5	3.4e-06	37.00	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_208260 PE=4 SV...	[more]

BLAST of Lcy07g009550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571042.1	1.3e-39	84.21	hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN61893.1	4.8e-39	86.46	hypothetical protein Csa_006600 [Cucumis sativus]	[more]
KAA0045689.1	5.3e-38	85.42	hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995...	[more]
KAG6605007.1	2.9e-36	82.80	hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PKI78722.1	2.5e-11	44.57	hypothetical protein CRG98_000947 [Punica granatum]	[more]

BLAST of Lcy07g009550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21180.1	5.7e-06	42.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21185.1	1.3e-05	36.78	unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..91
None	No IPR available	PANTHER	PTHR33306:SF32	SUBFAMILY NOT NAMED	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g009550.1	Lcy07g009550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane