Lcy07g004860 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g004860
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr07: 26186041 .. 26189254 (-)
RNA-Seq ExpressionLcy07g004860
SyntenyLcy07g004860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCCGAAAATGGGGTCGTTTTCAAAATTTTCAGTGATTTTTCACTTGCAGAAGGAGGGAATGGAAAAGGAAAAGAAGTTGGGATGTTGGAATTTAGTTTGGTTCGAATGTGGATGGACAGTGACCTCGACTTGCGACCAAAGATTCTGTGTGTCCTGCAGTCATTTGTAAGAAATGTCTGTAGACTTCTCGATACAGCTAAATTCCACTACTCTTCTTGCGCCTATGACCTAGGGTTTTCTTATTACAAACATTCCAACTCTTATCCATCCACGTTTTAATGTTTACTCCTATACTCCTATATTTGGTAGGATGAGCTAATTTTACCCTATACTTTCTATAATTTCAAAATACACATTAGATTTAGATTAATGTTGTAATTTTTATTTTTATTTTTATGTTCTTCAAACGTCTCATTTGAGAATAACTCAATGGATTATTGTTATGAAGGAAACCCAACTTTAATTTAGGTAGATGTAATTAAGGATAAGAAGTACAAGAGCATGATCGAGGAGTTCCTTTTTTACCTCTTGGATTTGTAATAGAGTTGTCCATGATTTGGTCTCTCACGTGTGAATGTCTCATCATATCGAAATATTGGTAGAATATCACCCATCATGGGTGGATCTAGCTATTTGTCCAAATGCTTCATAGCCCTAATCCCCTTTTCCTTTATGTTCTTTCTTTATTCTTATGTTTTTGTATATATATACCTAATAGGTATATTGTAGGGATTACAAAAACAAACCGGTACAAAGTTGATAGAGCTATGAAAAAAGACACTCTAAGTTTGAAAAAGTGTAATAGGTCCCTAAATTTTCAATTTTATGTCTAATAGGTTTCTAAACTTTAAAAATGTCCACTAGATACCTATTCGATTTTTTTACAAAAATTAAACTAACTAATCTACTAGATACAAACTTGAATTTTATGTCTAATACGACTCTAAACTTTCAATTTTGTATCTACTAATCTGGTAAATTTTAAAAAATATTGAATAAGTTAAGGATCTATTAGACACAAAATTGAAAATTCAGAGATCTATCACAAACTTGAAAGTAAAAGGTTTAAGGACCTTTAGACACAAAATTGAAAATTTAGTATACCAAATAGTCACAAATATGAAAGTGTAGGGACCTATTAGACACTCTTTAAAATTCATAGACCAAATAGACACTGTCTTGAAAGTTCATGTACTAAACTTATAATTTTATATTTTTACAAACTAGTGAATGTATGTGTTCACATGTAATTTCAAATGAATGACACACGTGAAATAAATTTATATCTATATATATTAATCTTGTGGGTGTAGTACAATCTCTAATATATGATCCTCTGATTCCCTCTCTTGTGTGTGTGTTTCACTGAGGGCTGGAATGCTTGTTCTCGAGTTTGAAGCTTCAATTGATCCTTAGAGTCTTGAAGTGTTCGAGTCTTGAAGGGTCTTTGGTCTTTGGTCTTCAAGGGCAGTTCAACACTCAGGGACTTATGGAATTTCAAGGAGTCTTCTACCTTCTCTTATGGTGGAGTCTCTTTGAATTCTCTTGTCTTGGTTGAGAGTCCAATTTTTTGAACCTTTGAAATGAAAGAGAACTTCTCTATCTATAGAGTTCTCCATGGATGGTCTTTGGTGGCTTTTGCGCCTAACAACTTGGACTTGGGCTTTATTGGCTTTGGGCCCAACTATTTGGATTTGGGTTTGATTTATATCTAACCCAAAAACCATATGATCCAAATGTTAAATGATCCAAATTTGATCAAATTAATTTTTAATTAATTGATCAAATGGACATTTGGCCTTAAAATTTTTATTATTGGCCAACATTGTCTACTTATTAAATTTGGGTCACATCTCAAATTATAATTGGTTCCAAATTTAACTATTTTTAATTTCGTCATTAATTTTAAATAATGATGTGACAATTTGTGATTAGTCAAAATTTATCCTTCAACTGCATGTAATAGAAGTCTAACCTAAGCAAAAATTTGTAAATTTATTCAAATCCATGGTTCAATTTGTTGAAATTAGTAGTTTATGGTAAAAATTGAACAATCATACCAACTTTGAAGGAATTTTTGAAAATTTTCCTTTCAAATATCTCTAAACTAAATGTTGACTAACTTTATTTTACTACAATAAATATGCTAAGGGAAAAAAGAATCCTTCCTCTACCATTCAACGAAACAAAAACAAATAAATGGAGCGATTATTTATTTGTTTAATTTGTCTTAGCGTGTATGTATATATATATATTTAAGGGGTCGTTTCGACAACCCATTAGATTAAAAAAAGAATAATAATAAATAATAAATCTATAAAACATTTTGATGTGGCAATCTCTTCCTTTTCTTAGTGTAGATTCTTCTCTAGAAAGAAGCATTTTCTCTTTTCTATAGAGAATTCAGTCAACAACTGATTTCATAGGACAGTTAGTCGTCTTTCTAGCTCTTCTACCTTCATCAACTCATTCCTTCGGTGGTCCATTTACAATGATGACTCTTGAAGATTTTTTTGGAGGAATAACATCAACTTAGTGTTACCTCAGTGGAAGAAGAGGTGTCCATTGATGCGCTTTGAGGCCATGTGGTGGAGAAGGGAAAAGCAAAAGGATTTTTTTTTTTGTGGGCAAACTTTTGGCTAGTCGTATTATTTCAGGGGGTAATTCGCAATACTTTTTAAGTTGCTTGGAGATTAGATACGAGTTTCATGGTAGAAACATTTGGGAAGAATATTTTCTAGTTTACTTCCACAATGAAGGGGATCAGTCATATTATGTAGCAGGTACCATGGTTTTTTTTTATAAGTTCCTTATGGTTATGGAGGAACCGACAACTCATGTTAAACCATCTGAGCTTGCATTTACTCATGTTGCATTTTGGGTGGATTTTCTTGACTTGCCCATGGAATGTTTTAATTGTTTTATGACTGAATAGATAGCTAATGCTTATGGAAAACTTGAGGAAATGGATGAGGTCCATAGTGCCCACTGTTGGGGGACTAGTATTCGCGTACGAGTGATTATTGATATTTCTCAACCGTTGCGACAAGGAATCAAACTCAATCTAGATGGCCCAATGGGGGGATTGTGGATACCATTTACGTACGAGAAGCTCCTAGAATTTTGTGCTCACTATGGAGTCATTCGCCATAAGGTCAAAGATTGTGGACGTTTCTATGAGATGGCTAAGAAATGCGAGGGACAATGA

mRNA sequence

ATGAGGTCCGAAAATGGGGTCGTTTTCAAAATTTTCAGTGATTTTTCACTTGCAGAAGGAGGGAATGGAAAAGGAAAAGAAGTTGGGATGTTGGAATTTAGTTTGGTTCGAATGTGGATGGACAGTGACCTCGACTTGCGACCAAAGATTCTGTGTGTCCTGCAGTCATTTATAGCTAATGCTTATGGAAAACTTGAGGAAATGGATGAGGTCCATAGTGCCCACTGTTGGGGGACTAGTATTCGCGTACGAGTGATTATTGATATTTCTCAACCGTTGCGACAAGGAATCAAACTCAATCTAGATGGCCCAATGGGGGGATTGTGGATACCATTTACGTACGAGAAGCTCCTAGAATTTTGTGCTCACTATGGAGTCATTCGCCATAAGGTCAAAGATTGTGGACGTTTCTATGAGATGGCTAAGAAATGCGAGGGACAATGA

Coding sequence (CDS)

ATGAGGTCCGAAAATGGGGTCGTTTTCAAAATTTTCAGTGATTTTTCACTTGCAGAAGGAGGGAATGGAAAAGGAAAAGAAGTTGGGATGTTGGAATTTAGTTTGGTTCGAATGTGGATGGACAGTGACCTCGACTTGCGACCAAAGATTCTGTGTGTCCTGCAGTCATTTATAGCTAATGCTTATGGAAAACTTGAGGAAATGGATGAGGTCCATAGTGCCCACTGTTGGGGGACTAGTATTCGCGTACGAGTGATTATTGATATTTCTCAACCGTTGCGACAAGGAATCAAACTCAATCTAGATGGCCCAATGGGGGGATTGTGGATACCATTTACGTACGAGAAGCTCCTAGAATTTTGTGCTCACTATGGAGTCATTCGCCATAAGGTCAAAGATTGTGGACGTTTCTATGAGATGGCTAAGAAATGCGAGGGACAATGA

Protein sequence

MRSENGVVFKIFSDFSLAEGGNGKGKEVGMLEFSLVRMWMDSDLDLRPKILCVLQSFIANAYGKLEEMDEVHSAHCWGTSIRVRVIIDISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVKDCGRFYEMAKKCEGQ
Homology
[Close]
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.5e-19
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 26  KEVGMLEFSLVRMWM---DSDLDLRPKILCVLQSFIANAYGKLEEMDEVHSAHCWGTSIR 85
           K +  LEF+ V  W+   D  +    K + +    + NA G   ++D       WG S+R
Sbjct: 116 KNISELEFNRVAFWIHLFDLPMSWLNKTMAIR---LGNAIGNFVDVDCNEKGFSWGASLR 175

Query: 86  VRVIIDISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVKDCGRFYEMAK 143
           +RV+IDI++PLR+GIK+N+DGPMGG WIP  YE+L +FC   GVI H   DC   Y  A+
Sbjct: 176 IRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQ 232

[Close]
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.0e-16
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 31  LEFSLVRMWM---DSDLDLRPKILCVLQSFIANAYGKLEEMDEVHSAHCWGTSIRVRVII 90
           ++F  V +W+   D  L    K    + + + NA G  E+++   +  CWG+ +RVRV  
Sbjct: 122 MDFRNVSLWVHFFDLSLACMNK---TMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRF 181

Query: 91  DISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVKDC 135
           D+ +PL +GIKLNLDGPMGG WIP  YE+L +F  H G + H +KDC
Sbjct: 182 DVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC 225

[Close]
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0 

Query: 31  LEFSLVRMWMD-SDLDLRPKILCVLQSF---IANAYGKLEEMDEVHSAHCWGTSIRVRVI 90
           L+F+ + +W+   DL L     C+ +     + NA G  EE D       WG+++RVRV+
Sbjct: 122 LDFTKLPIWVRFFDLPLG----CITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVM 181

Query: 91  IDISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVK 133
           +DIS+PLR+GIKLNLDGP+GG WIP  YE+L +FC H G+   + K
Sbjct: 182 LDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCGLSSSRKK 223

[Close]
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match: A0A6P6FRB5 (uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC112489822 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.2e-11
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 50  ILCVLQSF---IANAYGKLEEMDEVHSAHCWG--TSIRVRVIIDISQPLRQGIKLNLDGP 109
           +LC+ ++    I +  G L  +D     HCWG    +RVRV IDI +PLR+G+ +  DG 
Sbjct: 80  LLCMTKTVGMAIGSQLGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDG- 139

Query: 110 MGGLWIPFTYEKLLEFCAHYGVIRHKVKDC 135
               W+ F YE+LLEFC   G++ H  KDC
Sbjct: 140 ADSFWVEFQYERLLEFCFTCGMLGHSQKDC 168

[Close]
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match: A0A6P9EID8 (uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 58  IANAYGKLEEMDEVHSAHCWGTSIRVRVIIDISQPLRQGIKLNLDGPMGGLWIPFTYEKL 117
           I N  G +EE+D   S   WG  +R+RV ++ISQPL +GI + L G  G +WI F YE+L
Sbjct: 120 IGNKIGIVEEVDGEQSEVAWGEYLRIRVRVNISQPLMRGITVKL-GQFGSVWIRFAYERL 179

Query: 118 LEFCAHYGVIRHKVKDC 135
             FC   G + H+ KDC
Sbjct: 180 PNFCYMCGKLGHQQKDC 195

[Close]
BLAST of Lcy07g004860 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 5.1e-19
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0 

Query: 26  KEVGMLEFSLVRMWM---DSDLDLRPKILCVLQSFIANAYGKLEEMDEVHSAHCWGTSIR 85
           K +  LEF+ V  W+   D  +    K + +    + NA G   ++D       WG S+R
Sbjct: 116 KNISELEFNRVAFWIHLFDLPMSWLNKTMAIR---LGNAIGNFVDVDCNEKGFSWGASLR 175

Query: 86  VRVIIDISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVKDCGRFYEMAK 143
           +RV+IDI++PLR+GIK+N+DGPMGG WIP  YE+L +FC   GVI H   DC   Y  A+
Sbjct: 176 IRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQ 232

[Close]
BLAST of Lcy07g004860 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-16
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 31  LEFSLVRMWM---DSDLDLRPKILCVLQSFIANAYGKLEEMDEVHSAHCWGTSIRVRVII 90
           ++F  V +W+   D  L    K    + + + NA G  E+++   +  CWG+ +RVRV  
Sbjct: 122 MDFRNVSLWVHFFDLSLACMNK---TMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRF 181

Query: 91  DISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVKDC 135
           D+ +PL +GIKLNLDGPMGG WIP  YE+L +F  H G + H +KDC
Sbjct: 182 DVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC 225

[Close]
BLAST of Lcy07g004860 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-15
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0 

Query: 31  LEFSLVRMWMD-SDLDLRPKILCVLQSF---IANAYGKLEEMDEVHSAHCWGTSIRVRVI 90
           L+F+ + +W+   DL L     C+ +     + NA G  EE D       WG+++RVRV+
Sbjct: 122 LDFTKLPIWVRFFDLPLG----CITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVM 181

Query: 91  IDISQPLRQGIKLNLDGPMGGLWIPFTYEKLLEFCAHYGVIRHKVK 133
           +DIS+PLR+GIKLNLDGP+GG WIP  YE+L +FC H G+   + K
Sbjct: 182 LDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCGLSSSRKK 223

[Close]
BLAST of Lcy07g004860 vs. NCBI nr
Match: XP_011460179.1 (PREDICTED: uncharacterized protein LOC101304253 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 53  VLQSFIANAYGKLEEMDEVHSAHCWGTSIRVRVIIDISQPLRQGIKLNLDGPMGGLWIPF 112
           VL   IAN  GK  E++E     CWG  +R+RV +D+ QPLR+G+K+ L+G    +W+ F
Sbjct: 142 VLGRRIANYLGKCLEVEEEGDGECWGKYMRLRVRLDVMQPLRRGMKICLEG-CEPIWVDF 201

Query: 113 TYEKLLEFCAHYGVIRHKVKDC 135
            YE + EFC H G+  H   +C
Sbjct: 202 KYEGIPEFCYHCGIWGHNESEC 222

[Close]
BLAST of Lcy07g004860 vs. NCBI nr
Match: XP_004293574.1 (PREDICTED: uncharacterized protein LOC101304253 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 53  VLQSFIANAYGKLEEMDEVHSAHCWGTSIRVRVIIDISQPLRQGIKLNLDGPMGGLWIPF 112
           VL   IAN  GK  E++E     CWG  +R+RV +D+ QPLR+G+K+ L+G    +W+ F
Sbjct: 166 VLGRRIANYLGKCLEVEEEGDGECWGKYMRLRVRLDVMQPLRRGMKICLEG-CEPIWVDF 225

Query: 113 TYEKLLEFCAHYGVIRHKVKDC 135
            YE + EFC H G+  H   +C
Sbjct: 226 KYEGIPEFCYHCGIWGHNESEC 246

The following BLAST results are available for this feature:
BLAST of Lcy07g004860 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g004860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DU552.5e-1941.67uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ12.0e-1642.06uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX302.2e-1544.34uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P6FRB57.2e-1141.11uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC11248982... [more]
A0A6P9EID82.7e-1045.45uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 P... [more]
BLAST of Lcy07g004860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156185.15.1e-1941.67uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.14.0e-1642.06uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.14.5e-1544.34uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_011460179.11.1e-1042.68PREDICTED: uncharacterized protein LOC101304253 isoform X2 [Fragaria vesca subsp... [more]
XP_004293574.11.1e-1042.68PREDICTED: uncharacterized protein LOC101304253 isoform X1 [Fragaria vesca subsp... [more]
BLAST of Lcy07g004860 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 87..134
e-value: 7.4E-8
score: 32.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g004860.1Lcy07g004860.1mRNA