Lcy07g004320 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g004320
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr07: 21174637 .. 21178303 (+)
RNA-Seq ExpressionLcy07g004320
SyntenyLcy07g004320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAATGGTATGTGTTATTATTGAATTGAATTAAATAAAACAAGAGAGAAGAAGGTCAACACCTACAACCTGCTAACATAATTACAACTACCTAACCTCAACTGTAGCAGCAACTGAACACGGAACAAGGACAGAAAGTAATTGTTAGCAACAGCTGAACACGAAACAAGGACAGAAAGTAATTGTTAGCATTAGCTGAACACGAAACAAGGACAAAAAGTAATTGTGCTGTTGTAACAAACAGACCCATATTCCACTTTTTCCCCAGCCAAACATATCCCTAGAAAAAAAGAACTCAATTACCCTAAAAAAATCGAAGCACCCAACAAACAAGAAAGCTTCAGAGACGATGGAATTGGGGCGATGACATCAAACAAAGAGAAGACCCAAACAAGCAACTCTACGGCGAACCGAGAATCCAATTGCAAAAGTAGAGAACAATAGAGGCCCAAATAAAAACTTACCCGGCGGCGACGGCGACTTAAACTCGCACTAGCAACAAGCACAAGCACGGCAAGCAGCGGCGGAGGCGGCAACCACGAGCACGAGAGGAGAGTGAAGACGGCTGCGACTCGACTACGACTGCGAAGAGTGAAGACCGAAAAAGAAAATCGAGGAAAGAAGATGCGACTGCGATGGAACCCTAACTCAACTTCGGTTCGGGTAAATAATTTATGAGGACCGAACAGAACCTTTCAATTCGGTTCGGTTCGGTCACTGATAAAGTTGAAAACCGAACCGAACCGAACCGGTTCGATTCGGTTCGGCGGTTCGGTTCGGTTCCTTACACCCTTAGTTTCAAGTTTAGCGTAGTAAGAACAAAAAGGTGAAAGAATTTGGGGATCGTTGGTTACTAAATAGAGCTATGTAATTATGATAAATTAATCTCATGTATTAGTTGGTTAAAGAGTTTGTTAAGAGTTAGTTAGTTATTAATCACATGTATAAATACGGTACTTCTCAATTGTATCAATTAAGGCAATAATATTCAAAGTATTTTTACACTCTTGATTTCAGCAAGTTTCGCATGGTATCAGAGCCCTTCTGACAAACGTCAATGACTTCCTCTTCATCTAATATCTCTGATAATTCCTCTGGCTGTGGTACTCAGTCAAATTCCTCAATTGTTCTTCTTTCAAATATATGTAATCTCAATGGCCTCCTCTTCATCTAAACTAAAGGTCTTCGCATGGCGAGCTAGCCTGAATATTCTGTCGACTATGACAAACCTTGCAAATCGTCGAATCAATAGCGAGGTCCGTTGCCCATTGTGTGGGAAGGAAAATGAAACGACACTTCATGCATTATGAACATGCAAGAAGGTAAAAAAGCACTAGGCTCGTTGGAGCCCAGTGCAATCTCTCCTAACCACTTATTTCGCTGATGCTATTGACCTCTTTTGTAGGTATCAAGAGGATCTTACTGCTAATGATTTGGCAACCTTTGTGGCAGTCCTATGGTCTATGTGGAACAACATAAATAAAGAGGTTTTTCAGGGCAAACGAAGTTATCTCCAACTGAGCTACGACCCTATAGATTGGGCATCTGTGTACATATTAGAGTTCATGGAAACCCAAGCTAAGCATCATGAAGACTATCGAGTCCGAGAGCGTCTGAGAGATGCTGATGATTCCAGGTTGACTGCGTGGATTCCGCCACCCCAAAACCATTTCAAGCTGAATGTGGATGCAGCACTAGCAAATGGAGAGATGGGATCAGACATGATCATAAGAAATTCAAAGGGCGAATCGATGGCGATTGCAGAATATTTCAAGAGAACGAGTTGCTCAGTAGAGTGGGCAGAAGCACAGGCTCTTGTAGACAACATTCAGTTAGCGATGGAGTCGGGACTATCACCAATCTGGACAGAGACGGATTCCAAAATTGTATGGAATCTACTTCAGGACCGCGACAATTATCATAATGAGATTGCTCCTCTAATTCACCATCTTAAGCTTTTGGCCACAACAAAGCACATCAGAGGGTTTTTACTAACAAAAAGGGAAGGCAACGAAGCAGTGCACCAACTGGCTACTCATGCTCGCACAACAAAGCATTTTGAAGTTTGGTTAGAAGACCATCCTTCTTGGATTCCCAACTTTGTTGCTCAAGAAATGCCTCAATGGACGTTTCGACCTTTTCTTTTGTTTCTGTTTCCTTGTAATTTTCTTGTGTTTTCTCTGTTTTTTTTTTTTTTTAAAAAGGGTACCTTCAAATTTTCAATATGTCATGTACACATTCCGTGTTAGCTCCAGCGGGTTTTTAAGAATGGTAAATAAATTTTATATAAAAAATTAGATAAAAGGGACGGCCGTAAACTCAATTTTTCCTATACATGGCTTTCTGTACTACAACAAACCCCAACTTGCACAAGACTCATTCTTGATTGTACCTTTTATATTTGTTGCCATTTTGCATGAAACTACAGCCGAATCCAATCAAAAACCGCAGTCCAGAATCACCTACTTCTCAAATTATTATTATTTTTTTTCAAAAAATAAAGTTAAATGAATAAACAAAACTACAGAAATTGAAACACATGCGCATGTACTTTATTTGTAAAAGTTGGGGAATTTGACCGAAGCATAGGCAGAAGGGAAAAGTAGCTGTTATAGGTAATTTTGGATCACTTCGAAGCGTAAGGAATTGGCGAGGACAACACAACACCAATCCGAAGACACGACCAGTAAGCAAACCCTGGAGGAGAAATAGATTGGAGGATTGGGCCAAGGCCGAAGGGATTGGGCCTTGGCCCAACCCCATGCTCGGCCCACTTGTGTGGGTCGAGTTCCTCTCTCTCCGCTCGGTTCTTGGTGTCTTGGGTCAGCCCTGAATTGTTTTCAAACGCCTAAAAATCCTAAAAGGGGAAAAAATATATAAACCCTCCTTCAACCCTTGAAGGGGGCACTACAAGAATTAAAAGATTTCCTGACAGTTTTTCTCCTGACGTGAAAAACAAGATGTAGGCAATGTCGACGATTTTAAAACCGTTAGGATATGTATGGGAAATGTGCCAATGATTTAGTAAAACCGTTGACATATATATAGGCAACACCAATGGTGTTTCAAGTCGTTGGCAAATACATAAGAAATGCCAATGGTTTTATTGAACCGTTGGCATATATATAGGAAATCCCAAACTGTTGAAATCTTGATTTATTTGGTTCGTTGGTACAGCCAACAATTTAATTAAACCGCCGGTGGTTCTTTACTCTATGGCAACGGTTTGGTTAGACCGTCGGCGGTTCATCTATTTATCGATGGTCCAGTTAAGTCGTTGGGGGTTCTTGGAATGCCAGCGGACCAGTGGTTCATTGATTTACCAACGATCTGGTCGAACCGTCGAGTTATTTCTCCTATTTCCCAATGGCCCGGTCGAACCATTGGCTATAAATTCTTATAATCCAACGTTTGAGTTAAACCGTCGGGAGATTTTACTTTAAAATTCCCCAAATCGCGATTTCTTCCTTCCCTTTCTCCCATTTTCCCTCCATTCTCTCTTCATTGCCGCGCTTCGTGCCCCATCCTCTCAATTCTCGCCCGCCGCCGTCTCCGTTCGTCTTCACAATTTTTTGCTTCGTTTCAATTTCAGGTATGTTTCATTCATTCATTCTTCTTGTTCTTCGCGATTTGAATGCCTTTTCTCATCTCCAAAACATCTAA

mRNA sequence

ATGGATAAATGGTATCAAGAGGATCTTACTGCTAATGATTTGGCAACCTTTGTGGCAGTCCTATGGTCTATGTGGAACAACATAAATAAAGAGGTTTTTCAGGGCAAACGAAGTTATCTCCAACTGAGCTACGACCCTATAGATTGGGCATCTGTGTACATATTAGAGTTCATGGAAACCCAAGCTAAGCATCATGAAGACTATCGAGTCCGAGAGCGTCTGAGAGATGCTGATGATTCCAGGTTGACTGCGTGGATTCCGCCACCCCAAAACCATTTCAAGCTGAATGTGGATGCAGCACTAGCAAATGGAGAGATGGGATCAGACATGATCATAAGAAATTCAAAGGGCGAATCGATGGCGATTGCAGAATATTTCAAGAGAACGAGTTGCTCAGTAGAGTGGGCAGAAGCACAGGCTCTTGTAGACAACATTCAGTTAGCGATGGAGTCGGGACTATCACCAATCTGGACAGAGACGGATTCCAAAATTGTATGGAATCTACTTCAGGACCGCGACAATTATCATAATGAGATTGCTCCTCTAATTCACCATCTTAAGCTTTTGGCCACAACAAAGCACATCAGAGGGTTTTTACTAACAAAAAGGGAAGGCAACGAAGCAGTGCACCAACTGGCTACTCATGCTCGCACAACAAAGCATTTTGAAGTTTGGTTAGAAGACCATCCTTCTTGGATTCCCAACTTTGTTGCTCAAGAAATGCCTCAATGGACGTTTCGACCTTTTCTTTTGTTTCTGTTTCCTTGTATGTTTCATTCATTCATTCTTCTTGTTCTTCGCGATTTGAATGCCTTTTCTCATCTCCAAAACATCTAA

Coding sequence (CDS)

ATGGATAAATGGTATCAAGAGGATCTTACTGCTAATGATTTGGCAACCTTTGTGGCAGTCCTATGGTCTATGTGGAACAACATAAATAAAGAGGTTTTTCAGGGCAAACGAAGTTATCTCCAACTGAGCTACGACCCTATAGATTGGGCATCTGTGTACATATTAGAGTTCATGGAAACCCAAGCTAAGCATCATGAAGACTATCGAGTCCGAGAGCGTCTGAGAGATGCTGATGATTCCAGGTTGACTGCGTGGATTCCGCCACCCCAAAACCATTTCAAGCTGAATGTGGATGCAGCACTAGCAAATGGAGAGATGGGATCAGACATGATCATAAGAAATTCAAAGGGCGAATCGATGGCGATTGCAGAATATTTCAAGAGAACGAGTTGCTCAGTAGAGTGGGCAGAAGCACAGGCTCTTGTAGACAACATTCAGTTAGCGATGGAGTCGGGACTATCACCAATCTGGACAGAGACGGATTCCAAAATTGTATGGAATCTACTTCAGGACCGCGACAATTATCATAATGAGATTGCTCCTCTAATTCACCATCTTAAGCTTTTGGCCACAACAAAGCACATCAGAGGGTTTTTACTAACAAAAAGGGAAGGCAACGAAGCAGTGCACCAACTGGCTACTCATGCTCGCACAACAAAGCATTTTGAAGTTTGGTTAGAAGACCATCCTTCTTGGATTCCCAACTTTGTTGCTCAAGAAATGCCTCAATGGACGTTTCGACCTTTTCTTTTGTTTCTGTTTCCTTGTATGTTTCATTCATTCATTCTTCTTGTTCTTCGCGATTTGAATGCCTTTTCTCATCTCCAAAACATCTAA

Protein sequence

MDKWYQEDLTANDLATFVAVLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKHHEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAALANGEMGSDMIIRNSKGESMAIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAPLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEVWLEDHPSWIPNFVAQEMPQWTFRPFLLFLFPCMFHSFILLVLRDLNAFSHLQNI
Homology
BLAST of Lcy07g004320 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-20
Identity = 71/223 (31.84%), Postives = 109/223 (48.88%), Query Frame = 0

Query: 21  LWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKHHEDYRVRERLRDADDS 80
           LW++WN  N+ +F     +L ++   +DW + Y+  +   Q     +      L D    
Sbjct: 16  LWAIWNARNQSMFTNGHGFLLVNM--VDWVADYLQVYQSAQ-----EGPSLPLLLDGRGG 75

Query: 81  RLTAWIPPPQNHFKLNVDAALANGEM--GSDMIIRNSKGESMAIAEYFKRTSCSVEWAEA 140
           R++AW PP    FK+NVDAA   G    G D++IR+S    +  A  F      V  AE 
Sbjct: 76  RVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAEC 135

Query: 141 QALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAPLIHHLKLLATTKHI-RG 200
            A  + + LA+E+GL P   ETDS  V+NLL+      +EI  L   ++ + ++ HI  G
Sbjct: 136 LAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGG 195

Query: 201 FLLTKREGNEAVHQLATHARTTKHFEVWLEDHPSWIPNFVAQE 241
           F    REGN   H LA     ++ F VW+E+  S +   +A +
Sbjct: 196 FSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

BLAST of Lcy07g004320 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 58/186 (31.18%), Postives = 93/186 (50.00%), Query Frame = 0

Query: 47  IDWASVYILEFMETQAKHHEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAAL--ANG 106
           ++WA+ Y++EF E  +                ++    W+PP +  +K+N DA+   ++ 
Sbjct: 4   VEWANKYVMEFREANSNPFPG--------RVTNTAEVLWLPPDKRIYKINTDASFLASDQ 63

Query: 107 EMGSDMIIRNSKGESMAIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKI 166
             G  +IIRN +G+ MA A  +     SV+ AEA   V+ +QLA + G++P+  ETDS  
Sbjct: 64  HAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSR 123

Query: 167 VWNLLQDRDNYHNEIAPLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEV 226
           ++NL        +E   ++   K   T      F   KREGN+A H LA  A   + F +
Sbjct: 124 IFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSI 181

Query: 227 WLEDHP 231
           W+ED P
Sbjct: 184 WMEDWP 181

BLAST of Lcy07g004320 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 67/222 (30.18%), Postives = 106/222 (47.75%), Query Frame = 0

Query: 5   YQEDLTANDLATFVAVLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKH 64
           +++ L   D    V  LWS+WN  N  VF  +R       D   W S YI  F  T   H
Sbjct: 8   WRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVE---DDDLAGWVSTYIATFKATNTNH 67

Query: 65  -------HEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAALANGEMGSDM---IIRN 124
                   + ++   ++  A +   T W P  +  FKL  DA+ ++ +  + +   IIR+
Sbjct: 68  ATANQDVSQSFQQSSQIHQAQNH--TIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRD 127

Query: 125 SKGESMAIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDN 184
            +G+ +A A  +     SV+ AEA A V+ +++AME+G+SPI  ETDS  ++NL      
Sbjct: 128 HRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKE 187

Query: 185 YHNEIAPLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHA 217
             ++   +I ++K    T+    +  TKR GN   H LA  A
Sbjct: 188 GLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRA 224

BLAST of Lcy07g004320 vs. ExPASy TrEMBL
Match: A0A7J9D462 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.7e-17
Identity = 68/230 (29.57%), Postives = 101/230 (43.91%), Query Frame = 0

Query: 4   WYQEDLTANDLATFVAVLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAK 63
           W  ++   N        +W++W + NK V + K   L+              E +     
Sbjct: 101 WLLKNSAKNRKWLIAVSIWAIWFSRNKFVHERKVQSLE--------------EIVTFIWS 160

Query: 64  HHEDYR-VRERLRDADDSRLTAWIPPPQNHFKLNVDA--ALANGEMGSDMIIRNSKGESM 123
              +YR   E L+      +  W PPPQ  FK+NVDA  ++AN  + +D IIRN +G  M
Sbjct: 161 FGSEYRSSAESLKHPQPRSMVKWSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEGFIM 220

Query: 124 AIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIA 183
                      SV  AEA A++  +Q A++ G S +  E+DS++V N +Q     ++E  
Sbjct: 221 GSGFQRHNLVLSVVIAEAIAVLHGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYSESR 280

Query: 184 PLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEVWLEDHP 231
           P    +K LA   H   F    REGN A H L       +    W+ED P
Sbjct: 281 PFTWDVKNLARKFHCCRFQFVAREGNGAAHALVVEGMQAEGDSFWVEDAP 316

BLAST of Lcy07g004320 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 64/223 (28.70%), Postives = 103/223 (46.19%), Query Frame = 0

Query: 22  WSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKHHEDYRVRERLRDADDSR 81
           W +W N N  V  G   +   + D + W   +  EF      +H++            S 
Sbjct: 223 WRLWTNRN-SVVHGSAGW--AAADMVTWIDNFANEFRLANELNHKEVL----------SH 282

Query: 82  LTAWIPPPQNHFKLNVDAA--LANGEMGSDMIIRNSKGESMAIAEYFKRTSCSVEWAEAQ 141
             +W  P +  FK+N DA+  L +G+ G  +IIR+ KG ++A          SVE  EAQ
Sbjct: 283 QPSWKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQ 342

Query: 142 ALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAPLIHHLKLLATTKHIRGFL 201
           A ++ I LA++ G+S +  E+D+  V  LL D+     E+  +IH    L  + ++  ++
Sbjct: 343 ACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYV 402

Query: 202 LTKREGNEAVHQLATHARTTKHFEVWLEDHPSWIPNFVAQEMP 243
             +RE N   H +A HA +     VW E+ P  I   V  + P
Sbjct: 403 AVRREANSVAHCIAQHALSLDSPVVWFEEMPPDIARLVRGDSP 432

BLAST of Lcy07g004320 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-20
Identity = 71/223 (31.84%), Postives = 109/223 (48.88%), Query Frame = 0

Query: 21  LWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKHHEDYRVRERLRDADDS 80
           LW++WN  N+ +F     +L ++   +DW + Y+  +   Q     +      L D    
Sbjct: 16  LWAIWNARNQSMFTNGHGFLLVNM--VDWVADYLQVYQSAQ-----EGPSLPLLLDGRGG 75

Query: 81  RLTAWIPPPQNHFKLNVDAALANGEM--GSDMIIRNSKGESMAIAEYFKRTSCSVEWAEA 140
           R++AW PP    FK+NVDAA   G    G D++IR+S    +  A  F      V  AE 
Sbjct: 76  RVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAEC 135

Query: 141 QALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAPLIHHLKLLATTKHI-RG 200
            A  + + LA+E+GL P   ETDS  V+NLL+      +EI  L   ++ + ++ HI  G
Sbjct: 136 LAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGG 195

Query: 201 FLLTKREGNEAVHQLATHARTTKHFEVWLEDHPSWIPNFVAQE 241
           F    REGN   H LA     ++ F VW+E+  S +   +A +
Sbjct: 196 FSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

BLAST of Lcy07g004320 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 3.7e-18
Identity = 58/186 (31.18%), Postives = 93/186 (50.00%), Query Frame = 0

Query: 47  IDWASVYILEFMETQAKHHEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAAL--ANG 106
           ++WA+ Y++EF E  +                ++    W+PP +  +K+N DA+   ++ 
Sbjct: 4   VEWANKYVMEFREANSNPFPG--------RVTNTAEVLWLPPDKRIYKINTDASFLASDQ 63

Query: 107 EMGSDMIIRNSKGESMAIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKI 166
             G  +IIRN +G+ MA A  +     SV+ AEA   V+ +QLA + G++P+  ETDS  
Sbjct: 64  HAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSR 123

Query: 167 VWNLLQDRDNYHNEIAPLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEV 226
           ++NL        +E   ++   K   T      F   KREGN+A H LA  A   + F +
Sbjct: 124 IFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSI 181

Query: 227 WLEDHP 231
           W+ED P
Sbjct: 184 WMEDWP 181

BLAST of Lcy07g004320 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 6.2e-18
Identity = 67/222 (30.18%), Postives = 106/222 (47.75%), Query Frame = 0

Query: 5   YQEDLTANDLATFVAVLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKH 64
           +++ L   D    V  LWS+WN  N  VF  +R       D   W S YI  F  T   H
Sbjct: 8   WRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVE---DDDLAGWVSTYIATFKATNTNH 67

Query: 65  -------HEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAALANGEMGSDM---IIRN 124
                   + ++   ++  A +   T W P  +  FKL  DA+ ++ +  + +   IIR+
Sbjct: 68  ATANQDVSQSFQQSSQIHQAQNH--TIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRD 127

Query: 125 SKGESMAIAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDN 184
            +G+ +A A  +     SV+ AEA A V+ +++AME+G+SPI  ETDS  ++NL      
Sbjct: 128 HRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKE 187

Query: 185 YHNEIAPLIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHA 217
             ++   +I ++K    T+    +  TKR GN   H LA  A
Sbjct: 188 GLSKTGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRA 224

BLAST of Lcy07g004320 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-17
Identity = 65/227 (28.63%), Postives = 104/227 (45.81%), Query Frame = 0

Query: 7    EDLTANDLATFVAVLWSMWNNINKEVF-QGKRSYLQLSYDPIDWASVYILEFMETQAKHH 66
            E L+  D      V+W +WN  N   F    ++  ++  + ++WA+ Y +EF E ++   
Sbjct: 920  ESLSKADFEELCVVIWGLWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSN-- 979

Query: 67   EDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAAL--ANGEMGSDMIIRNSKGESMAIA 126
                +  R+ +  +     W PP +  +K+N DA+   ++   G  +II N +G+ MA A
Sbjct: 980  ---PITGRVTNTAE---ILWQPPDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAA 1039

Query: 127  EYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAPLI 186
              +     SV+ AEA A V+ +QLA E G+ P             L+D     +E   ++
Sbjct: 1040 TKYLENIQSVDMAEAIAAVEGLQLASEIGMHP------------ALEDL----SETGEIV 1099

Query: 187  HHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEVWLEDHP 231
               K   T      F   KREGN+A H LA  A     F +W+ED P
Sbjct: 1100 LKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLHEFSIWMEDWP 1122

BLAST of Lcy07g004320 vs. NCBI nr
Match: KAF4376330.1 (hypothetical protein F8388_026130 [Cannabis sativa])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 68/241 (28.22%), Postives = 109/241 (45.23%), Query Frame = 0

Query: 4   WYQEDLTANDLATFVAVLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAK 63
           W  E L   +   F+ + W +W   N  VFQ K        D   W S + ++ + T  +
Sbjct: 480 WLHEHLPNEEFFKFMGLTWLVWQRRNNFVFQHK------ILDKKIWTS-WAIDLISTHLE 539

Query: 64  HHEDYRVRERLRDADDSRLTAWIPPPQNHFKLNVDAALANGEMGSDM--IIRNSKGESMA 123
            H+       ++       +AWIPPPQN+F +N DA+L  G+ G  +  +IR+ KG  + 
Sbjct: 540 PHQKTSKNPAMK-----LNSAWIPPPQNYFLINTDASLIAGQQGCGLSAVIRDPKGGLVV 599

Query: 124 IAEYFKRTSCSVEWAEAQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDNYHNEIAP 183
            A  F     S+  AEA A+   IQLA+   ++     +DS  +   L    +Y  +   
Sbjct: 600 AATSFIPGCLSILLAEANAVHLGIQLAIRWSITNAQVGSDSHSLIKALNSDTSYPTDRGQ 659

Query: 184 LIHHLKLLATTKHIRGFLLTKREGNEAVHQLATHARTTKHFEVWLEDHPSWIPNFVAQEM 243
           L+  +KLL        FL   R  N  V+ LA  +R T+  E+W +  P+    F+  ++
Sbjct: 660 LVQDIKLLRNKFQTLQFLFFTRSCNRVVNSLAKWSRLTQKSEMWTDLLPNCAVAFLIADV 708

BLAST of Lcy07g004320 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 7.6e-06
Identity = 38/157 (24.20%), Postives = 71/157 (45.22%), Query Frame = 0

Query: 20  VLWSMWNNINKEVFQGKRSYLQLSYDPIDWASVYILEFMETQAKHHEDYRVRERLRDADD 79
           ++W +W + N  VF   R+  Q +   ++ A     E+++    + +    +   R+AD 
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTT---VEMALNDTKEWLDNTMTNEQ----QNGNRNADP 106

Query: 80  SRLTAWIPPPQNHFKLNVDAA--LANGEMGSDMIIRNSKGESMAIAEYFKRTSCSVEWAE 139
           SR T W PP ++  K N DA+    N   G   I+RNS+G  +       +   + E AE
Sbjct: 107 SRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE 166

Query: 140 AQALVDNIQLAMESGLSPIWTETDSKIVWNLLQDRDN 175
              L+  IQ +   G   +  E D++ +  ++  + +
Sbjct: 167 CSTLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSS 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C4671.9e-2031.84uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1CIF11.8e-1831.18uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1CDQ43.0e-1830.18uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A7J9D4629.7e-1729.57Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 ... [more]
A0A5C7H0P01.3e-1628.70Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022135942.13.9e-2031.84uncharacterized protein LOC111007775 [Momordica charantia][more]
XP_022140628.13.7e-1831.18uncharacterized protein LOC111011237 [Momordica charantia][more]
XP_022139684.16.2e-1830.18uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_022150918.14.0e-1728.63uncharacterized protein LOC111018954 [Momordica charantia][more]
KAF4376330.19.0e-1728.22hypothetical protein F8388_026130 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT5G65005.17.6e-0624.20Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 103..216
e-value: 4.4E-16
score: 58.8
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 91..217
e-value: 4.7E-10
score: 41.6
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 83..241
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 83..241
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 95..213
e-value: 1.76807E-13
score: 63.8724
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 92..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g004320.1Lcy07g004320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity