Lcy07g003810 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g003810
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr07: 17468124 .. 17471844 (+)
RNA-Seq Expression	Lcy07g003810
Synteny	Lcy07g003810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATGCAAAAGGGACGATAATTCCAAAGCCTTTTGTGTCGTTAAATTGCTGAGTTGACAAAGTGCAAAATTAACCCACCACAGGTTTCTTCTCTAGCTTATTACTGCAACCTCAACATCAAGAGATATGTGTTATCTTGTGCAGTGCAAGCAGTGCAATAAGACCTCATGGAAGGGCTGTGGCGACCACCTTGTTGATCTCTACAAGCGAGTAGAAAAGGGAAACCACTGCACCTGCCGCCCTTGGCCGGGCGTCGTCGTGCCATCGGAAGATGCCGCCGACATGAAGACACCAAAATCATCGACTGCAAACCCGAAATCGTCTGTCCCAGAAGGTACGGCTACAATAGAACTGGACTCGTTTGATATCTTTTTCTTTTTTCGTTTTCTGTTTCTTATTTTAAAATTAGCCATCATAAAATATTGTAGGATTGGTTTTAGCAAATTCTTTTATGGTTCTTCAATTTTAGTTTTAGGGATAGAAGTTTGAAATTTTGAAAGGATGGACGAAATTTGAGAATTGCAAACGGATGATTATAACAAATTTTGATGGGCAGAAAATAACTGGAGCGGCTTATTTTCAAAATAGACCTAACTTTTTTTGAAATACAAAATAGACCTAACTTTTAAACAAATGAAATGTTATTTTCAAAATTTTTGAAGTCAAGAGTTTGTAGCAGCAGTTATGTTGCGTACTTTTAACAATTTCCAAAAAATTTATAGCTAAAAAATAACATTCTAAAGAACAAAGTTCTCAAATTTAAAATGAGGGAGGCAGTGGTAAAATATATATCTTGGATTTTGGAAGTTATAAAAAAGATGCAAAAACCACACCACTTAAACTTCAGGAATTATTAGAGTTGCAATTCAAACAAGAACACAATATAATTGAAATAATTCAAGGTCAAGTTTGGCATCTAAGAGAGCTATATAATAATAATAATAATAATATAAAAATGAGGGGGACCAAGAAAGGGAATGAAGAATGTAAAATAAACTATTTTTGGAATAATTTTGAGATCCATCCGTTTCGTTTAATTTTTTTAATATTTTGTTTACTTTTCTAAAAAATCCCAAAAATACATAATAATTAAAAGATTTATTGACGAGGCTTAGCTATAAAGTATGAAGACATGGAATACATAATAAAAATAAAAATTAATTGCTAAAAATCTTTTGAGCAAAGGGTAAAGTCAAGGCGGGGAGATGTAAAATACATAATAAAACGTAATAATATTGAAAATTAGTATCAGGGAAATGTGGAATAAATAATAAAATATATAATAATAATAATAATTAAAGAAAATGTCAAATTGAGGTTAGGATTTAGGAATTAGGATTGGGGAGGGGTGGTATCTGGGCGAGGTTGGTATTGCTTTCAACAGAATAGCAGGAAAAAAAAAAAAGGTTCAGATTTTGGTTTTTGTGTTTTTAAAAATTAAACTTAGAAATCTTCTAAAAAAAAAAAAAAAAAAATTAAACTTAGAAACACAACCTTCACCTAAGTTTTTGGAGTTGACTAAGAATTTAGATATATCCTTAACGAACATGAAAATCATGCTAAAAAATTTAAAAAATCAAAGTTATTATCAAACCCACTCTTGATTTTCTTATTTTAAAAAAGCATACAAAGACGGAATGATTATAAAAATATTTTTTAAAAAAGAAAGAAAAAAGAATAAAAATTAAGGGCCCATTTGGTAACATTCTTGTTTCTTGTTTCCAATTTTATTAAGAAATCTAAGCATTTAATAACTATGTATGTTTCTTGTTTTTCATTTTTTAGAAACACTCCCAAAATTTGTATAGAACTTTTGGGAACAATTAAAACTAGTTTCTCCTTTTTTGTTCTTGTTTCCAATTTTTCCAAACATAAATAACAATATAGGTTTATTATTATTGAATGTATAGGTGTTAGGGTCATGAAATTCTATTTTTCTTTATTAAAAATTAAGAAACGGAAACAAGAAACGAGAACGTTACCAAACAGGCCCTAAATAATTATCAAGTTCGTTTTATTTTCATTTTGGAAAATGGAAAATAGAAAATAAAAAAACAAGATATCGGGATATTACCAAATTGACCTCTGTTGTATTTGCTTTATTTGTGGGCTTTGAAAAACAATTTAAAATTAAAATATATATTTTTCAAACTTATTTTCTCTTGATTTTGAAAAACATTTTTAAATTAAAATATTTTCCAAAATTGACCTCTGTTGTATTAGAGTTTCTAATGGTGCATTTGGGATTGCAGATGGGACACGTAAAATTGATTTTGAAAAAATACCAACTTTTTTAGTGTTTGGTAATATAGATTTTTTAAAAAAGATTTCTCAAAATGCTCACTAGATCCTTCCATAATTTTTTTTTTCAATTCCTAACGTATCGAAGCTTCTCCAATATATACTTTTTTTTTTTTTTAATTCCATCATACTTAAAACAACTTCAAGTGAAAACATAAAAGTTTATGAAATATAATCTGTAATTAAGCTATAAAAATGGTAAATAATTAACTCATTATATCAATAATTAAAATAATGTCTACTTTAGTCCTAGAAATAATTCTTTTCACATCCAAGAATTGTATGTTTTAAAGTATAATAGTATAGCTACAAGTTTGATGAGAACAAAATAGACGATTTAATAATTATGAACTCTAATAAGTTAATTATTTAGAATTTTTATAGTTTGAGTTATAAATCATATTTTCTTATTACTTTAAATTATACGATAAAAGGCTAAAGAGAATAGTTTTTTTTTATACTATTATAATGAACAAATGTTACTCCAATTTAATTACAAACAAAATGTATACAAAAAATGCAACACTTCATAATTATTTCATACAAATACACGATTCTAGCCAACAATAGCATAGTTCAACTGGCATAAAGTGTTATGACAGAAATCGTAATCAACGTAACAAGAATGAGAGGGAGAAGAAAAACAACAGACAGATATACGTGGTTCAACGGTGTGTTAGCTACATCCACGGGCAGAGGGAGAGAAACGATTTTATTAGATCACAGAGATTAGGGCAAAATAGGTTAAGAGGGTTTATATATAGCACCTAGGCCCAAAATAAAAGCCCAAAACGAAAAATCATATCTAATCTCTATACAAAAATTTAGCTTAGGGGGCGTTGCCCCCAAACCCCCACCGGGCGCTTCATATCAGATTCCAGGCATATCAACATAAAGTTTGTACCCTCAACCAAGAGATTAGAGGGGTTGAAATCCCTCACCCCACCTGTTATAAATAAATAAATAAATAAATTAAAAAAAAAAACTCTATGAATATTTTAGAAAGTAAGACCAGCGGTCCAAATTTAGAGATTCCTCATTATAATTTACTTATATATTTTGTAGGCATTGAGAGTTCGTGTTCGTTTGTGCAGGTAAGACAGTTGTTAAGCAAGCTTAGGCAACAGTGGAGTAGCTAGGTTAGAACTATTACTACTGTAATTGTGAGGTTTGTGAAAAGAAAAATCTCATTTCAGTTTGTCATTTAAGCAATTTCGTATTTGGATTATTGTTGCATCAATAATGAAAGGGTTTGTACAGGATGCCATCGCATCCAATTCTCATTTGGGTCATTTTCGTCTTTAAGAATCCATATAAATAATGAAGTGTGTAAAGGATGCTTTGTTTGGGTCATTTATTCAATTTCATGTTGGATTAATGATTCAGAAAAAATAAAAAGTGTTTGAAGTGAGATTAATA

mRNA sequence

GGAATGCAAAAGGGACGATAATTCCAAAGCCTTTTGTGTCGTTAAATTGCTGAGTTGACAAAGTGCAAAATTAACCCACCACAGGTTTCTTCTCTAGCTTATTACTGCAACCTCAACATCAAGAGATATGTGTTATCTTGTGCAGTGCAAGCAGTGCAATAAGACCTCATGGAAGGGCTGTGGCGACCACCTTGTTGATCTCTACAAGCGAGTAGAAAAGGGAAACCACTGCACCTGCCGCCCTTGGCCGGGCGTCGTCGTGCCATCGGAAGATGCCGCCGACATGAAGACACCAAAATCATCGACTGCAAACCCGAAATCGTCTGTCCCAGAAGGCATTGAGAGTTCGTGTTCGTTTGTGCAGGTAAGACAGTTGTTAAGCAAGCTTAGGCAACAGTGGAGTAGCTAGGTTAGAACTATTACTACTGTAATTGTGAGGTTTGTGAAAAGAAAAATCTCATTTCAGTTTGTCATTTAAGCAATTTCGTATTTGGATTATTGTTGCATCAATAATGAAAGGGTTTGTACAGGATGCCATCGCATCCAATTCTCATTTGGGTCATTTTCGTCTTTAAGAATCCATATAAATAATGAAGTGTGTAAAGGATGCTTTGTTTGGGTCATTTATTCAATTTCATGTTGGATTAATGATTCAGAAAAAATAAAAAGTGTTTGAAGTGAGATTAATA

Coding sequence (CDS)

ATGTGTTATCTTGTGCAGTGCAAGCAGTGCAATAAGACCTCATGGAAGGGCTGTGGCGACCACCTTGTTGATCTCTACAAGCGAGTAGAAAAGGGAAACCACTGCACCTGCCGCCCTTGGCCGGGCGTCGTCGTGCCATCGGAAGATGCCGCCGACATGAAGACACCAAAATCATCGACTGCAAACCCGAAATCGTCTGTCCCAGAAGGCATTGAGAGTTCGTGTTCGTTTGTGCAGGTAAGACAGTTGTTAAGCAAGCTTAGGCAACAGTGGAGTAGCTAG

Protein sequence

MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSSTANPKSSVPEGIESSCSFVQVRQLLSKLRQQWSS

Homology

[Close]

BLAST of Lcy07g003810 vs. ExPASy TrEMBL
Match: A0A3N7EY41 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G130750 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTP 57
          MCY V+CKQC K SW+GCG+HL  LY  ++KG HC C+ WPGVVVP+E+ A  +TP
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQTP 56

[Close]

BLAST of Lcy07g003810 vs. ExPASy TrEMBL
Match: B9S8R4 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0603820 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC+ V+CKQC K SW GCG HLV LY  +EKG HC C+ WPGVV+P+E   D + PK + 
Sbjct: 1  MCFRVECKQCGKYSWAGCGKHLVTLYDNIEKGKHCMCKSWPGVVIPAE--TDQRQPKGAI 60

Query: 61 ANPKSSVPEGI 72
          + P ++   GI
Sbjct: 61 SAPTTAATPGI 69

[Close]

BLAST of Lcy07g003810 vs. ExPASy TrEMBL
Match: A0A0A0LJK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.3e-15
Identity = 43/70 (61.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC LV CK C+K +WKGCG HL  LYK VEKG HC C PWPGVVVP ED  D  T K S 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 61 ANPKSSVPEG 71
              SSV  G
Sbjct: 61 PVQPSSVSTG 68

[Close]

BLAST of Lcy07g003810 vs. ExPASy TrEMBL
Match: A0A6A6K863 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_013250 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.2e-15
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC+ V C+QC K SW GCG HL  LY  ++KG HC CRPWPGVV+ +E+ A  + P  + 
Sbjct: 1  MCFRVDCRQCGKYSWGGCGKHLATLYNSIDKGKHCMCRPWPGVVIRTEEKATGQQPPKTL 60

Query: 61 ANPKSSVPEGIESSCSFVQVRQLL 85
          A   S+   G+E S      +Q+L
Sbjct: 61 AASASTTAAGVEKSSKMGVGQQVL 84

[Close]

BLAST of Lcy07g003810 vs. ExPASy TrEMBL
Match: A0A2C9USL7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G132300 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.2e-15
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC+ V CKQC K SW GCG HL  +Y  ++KGNHC CRPWPGV +P+E+ A  +    + 
Sbjct: 1  MCFQVDCKQCGKHSWGGCGKHLSAIYDGIDKGNHCMCRPWPGVTIPTEEKASGQQAPKTL 60

Query: 61 ANPKSSVPEGIESS 75
          A   S+   G+E S
Sbjct: 61 AASSSTTSSGVEKS 74

[Close]

BLAST of Lcy07g003810 vs. NCBI nr
Match: KAG6605256.1 (hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-25
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPG-VVVPSEDAADMKTPKSS 60
          MCYLV+CK CNKTSWKGCG+HL DLY R+EKG HCTCRPWPG VVVP +D+ADMKT   S
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 TANPKSSVPEG 71
           AN KSSVPEG
Sbjct: 61 MANSKSSVPEG 71

[Close]

BLAST of Lcy07g003810 vs. NCBI nr
Match: KAG7035219.1 (hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPG-VVVPSEDAADMKTPKSS 60
          MCYLV+CK CNKTSWKGCG+HL DLY R+EKG HCTCRPWPG VVVP +D+ADMKT   S
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 61 TANPKSSVPEG 71
           AN KSSVP+G
Sbjct: 61 MANSKSSVPKG 71

[Close]

BLAST of Lcy07g003810 vs. NCBI nr
Match: RQO90457.1 (hypothetical protein POPTR_005G130750 [Populus trichocarpa])

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTP 57
          MCY V+CKQC K SW+GCG+HL  LY  ++KG HC C+ WPGVVVP+E+ A  +TP
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQTP 56

[Close]

BLAST of Lcy07g003810 vs. NCBI nr
Match: KGN62035.1 (hypothetical protein Csa_006238 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-15
Identity = 43/70 (61.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC LV CK C+K +WKGCG HL  LYK VEKG HC C PWPGVVVP ED  D  T K S 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 61 ANPKSSVPEG 71
              SSV  G
Sbjct: 61 PVQPSSVSTG 68

[Close]

BLAST of Lcy07g003810 vs. NCBI nr
Match: EEF40067.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MCYLVQCKQCNKTSWKGCGDHLVDLYKRVEKGNHCTCRPWPGVVVPSEDAADMKTPKSST 60
          MC+ V+CKQC K SW GCG HLV LY  +EKG HC C+ WPGVV+P+E   D + PK + 
Sbjct: 1  MCFRVECKQCGKYSWAGCGKHLVTLYDNIEKGKHCMCKSWPGVVIPAE--TDQRQPKGAI 60

Query: 61 ANPKSSVPEGI 72
          + P ++   GI
Sbjct: 61 SAPTTAATPGI 69

The following BLAST results are available for this feature:

BLAST of Lcy07g003810 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g003810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3N7EY41	1.8e-15	60.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G130750 PE=4 ...	[more]
B9S8R4	2.3e-15	52.11	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0603820 PE=4 SV=1	[more]
A0A0A0LJK5	2.3e-15	61.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1	[more]
A0A6A6K863	5.2e-15	45.24	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_013250 PE=4 SV=1	[more]
A0A2C9USL7	5.2e-15	48.65	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G132300 PE=4 SV=...	[more]

BLAST of Lcy07g003810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605256.1	3.9e-25	77.46	hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035219.1	1.1e-24	76.06	hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
RQO90457.1	3.7e-15	60.71	hypothetical protein POPTR_005G130750 [Populus trichocarpa]	[more]
KGN62035.1	4.8e-15	61.43	hypothetical protein Csa_006238 [Cucumis sativus]	[more]
EEF40067.1	4.8e-15	52.11	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of Lcy07g003810 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70
None	No IPR available	PANTHER	PTHR34724	OS12G0596101 PROTEIN	coord: 1..62
None	No IPR available	PANTHER	PTHR34724:SF2	OS12G0596101 PROTEIN	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g003810.1	Lcy07g003810.1	mRNA