Lcy07g003770 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g003770
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transpos_assoc domain-containing protein
Location	Chr07: 17354795 .. 17355211 (-)
RNA-Seq Expression	Lcy07g003770
Synteny	Lcy07g003770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCAATCATTGGATGGAGTAGAACGACATTTATTTATGTATGGAATATCTCCTTCATATAGTCAATGGGTTTATCATGGAGAACCACCGAATTTAGCTCGGTTTCAAAGAGATGGGACTTCTTCGATAAATAAGGGGTTAAGTACAGAGGAAGTCCATGCTCACAATGATGACGAAGAGATGCTCGATCTTCTAAATGATTTGCAAAGGCCAATGGTAGAAGGGGAGGAGGATGTAAATGATGAAGAAGACTTTGGAGATGAAAGGTCTAGTAATATAGAAGAGAATGAGACTTCAAACAACTTTGAAGAGTTGATGACTGAAGCATGTAATCCATTATACCCCGGTTGTTTAAAATTTTCGGTGTTGAATTTCTTGGTGAAGTTGATGCATATCAAGGTGCTCAATAATTGA

mRNA sequence

ATGTCGCAATCATTGGATGGAGTAGAACGACATTTATTTATGTATGGAATATCTCCTTCATATAGTCAATGGGTTTATCATGGAGAACCACCGAATTTAGCTCGGTTTCAAAGAGATGGGACTTCTTCGATAAATAAGGGGTTAAGTACAGAGGAAGTCCATGCTCACAATGATGACGAAGAGATGCTCGATCTTCTAAATGATTTGCAAAGGCCAATGGTAGAAGGGGAGGAGGATGTAAATGATGAAGAAGACTTTGGAGATGAAAGGTCTAGTAATATAGAAGAGAATGAGACTTCAAACAACTTTGAAGAGTTGATGACTGAAGCATGTAATCCATTATACCCCGGTTGTTTAAAATTTTCGGTGTTGAATTTCTTGGTGAAGTTGATGCATATCAAGGTGCTCAATAATTGA

Coding sequence (CDS)

ATGTCGCAATCATTGGATGGAGTAGAACGACATTTATTTATGTATGGAATATCTCCTTCATATAGTCAATGGGTTTATCATGGAGAACCACCGAATTTAGCTCGGTTTCAAAGAGATGGGACTTCTTCGATAAATAAGGGGTTAAGTACAGAGGAAGTCCATGCTCACAATGATGACGAAGAGATGCTCGATCTTCTAAATGATTTGCAAAGGCCAATGGTAGAAGGGGAGGAGGATGTAAATGATGAAGAAGACTTTGGAGATGAAAGGTCTAGTAATATAGAAGAGAATGAGACTTCAAACAACTTTGAAGAGTTGATGACTGAAGCATGTAATCCATTATACCCCGGTTGTTTAAAATTTTCGGTGTTGAATTTCTTGGTGAAGTTGATGCATATCAAGGTGCTCAATAATTGA

Protein sequence

MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDEEMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLKFSVLNFLVKLMHIKVLNN

Homology

[Close]

BLAST of Lcy07g003770 vs. ExPASy TrEMBL
Match: A0A5A7T9T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003190 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.6e-36
Identity = 86/138 (62.32%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. ExPASy TrEMBL
Match: A0A5A7SWX9 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00370 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.6e-36
Identity = 86/138 (62.32%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. ExPASy TrEMBL
Match: A0A5A7TRX4 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001040 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.3e-35
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+   TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFEPGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMITREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. ExPASy TrEMBL
Match: A0A5A7V6L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00290 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.0e-35
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LD VERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDRVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. ExPASy TrEMBL
Match: A0A5A7SP00 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002580 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LD VERHLF YGIS  Y++WVYHGE  NLARF+R  +SS  + LS E  +  ++D+
Sbjct: 30  MTQTLDVVERHLFTYGISSVYNKWVYHGEATNLARFERGASSSEGERLSRES-NIGDEDD 89

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLL DLQ  M+  EE+ +D + F DE   +++E  TSN FEELM EA NPLYPGC K
Sbjct: 90  DILDLLTDLQGSMIAREENFDDGDGFDDEVPEDVDEINTSNVFEELMNEARNPLYPGCTK 149

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 150 FSSLNFLVKLMHIKVLNN 166

[Close]

BLAST of Lcy07g003770 vs. NCBI nr
Match: XP_038890872.1 (uncharacterized protein LOC120080309 [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 88/138 (63.77%), Postives = 107/138 (77.54%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           MSQSLD +E HLFM G+SPSY+QWVYHGEP NLARFQ + +SSI+  +S  E +  +DD+
Sbjct: 29  MSQSLDRIECHLFMNGMSPSYTQWVYHGEPANLARFQTNISSSIDDRVS-REFNVEHDDD 88

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           EM  LLNDLQ  M++GE DV+DEEDF D   +N EE + SN FEEL+ EA N  YPGC K
Sbjct: 89  EMFGLLNDLQGSMIKGEGDVDDEEDFKDGMPTNTEERDNSNIFEELIAEARNQFYPGCAK 148

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS+LNFLV+LMHIKVLN+
Sbjct: 149 FSLLNFLVRLMHIKVLND 165

[Close]

BLAST of Lcy07g003770 vs. NCBI nr
Match: KAA0038099.1 (uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-36
Identity = 86/138 (62.32%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. NCBI nr
Match: KAA0035762.1 (uncharacterized protein E6C27_scaffold403G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-36
Identity = 86/138 (62.32%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. NCBI nr
Match: KAA0045598.1 (uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.8e-35
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LDGVERHLF YGIS  Y++WVYHGE  NLARF+   TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFEPGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMITREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

[Close]

BLAST of Lcy07g003770 vs. NCBI nr
Match: KAA0063743.1 (uncharacterized protein E6C27_scaffold1290G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-35
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 1   MSQSLDGVERHLFMYGISPSYSQWVYHGEPPNLARFQRDGTSSINKGLSTEEVHAHNDDE 60
           M+Q+LD VERHLF YGIS  Y++WVYHGE  NLARF+R  TSS    LS  E +  ++D+
Sbjct: 1   MTQTLDRVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLS-REANVGDEDD 60

Query: 61  EMLDLLNDLQRPMVEGEEDVNDEEDFGDERSSNIEENETSNNFEELMTEACNPLYPGCLK 120
           ++LDLLNDLQ  M+  EED +D + F DE   +++E +TSN FEELM EA NPLY GC K
Sbjct: 61  DILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSNIFEELMKEARNPLYHGCTK 120

Query: 121 FSVLNFLVKLMHIKVLNN 139
           FS LNFLVKLMHIKVLNN
Sbjct: 121 FSSLNFLVKLMHIKVLNN 137

The following BLAST results are available for this feature:

BLAST of Lcy07g003770 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g003770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9T1	3.6e-36	62.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWX9	3.6e-36	62.32	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TRX4	2.3e-35	61.59	DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V6L2	3.0e-35	61.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SP00	3.3e-34	60.14	CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of Lcy07g003770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890872.1	1.0e-37	63.77	uncharacterized protein LOC120080309 [Benincasa hispida]	[more]
KAA0038099.1	7.3e-36	62.32	uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa]	[more]
KAA0035762.1	7.3e-36	62.32	uncharacterized protein E6C27_scaffold403G00370 [Cucumis melo var. makuwa]	[more]
KAA0045598.1	4.8e-35	61.59	uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa]	[more]
KAA0063743.1	6.2e-35	61.59	uncharacterized protein E6C27_scaffold1290G00290 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy07g003770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 3..137
None	No IPR available	PANTHER	PTHR10775:SF149	TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATED	coord: 3..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g003770.1	Lcy07g003770.1	mRNA