Lcy07g003160 (gene) Sponge gourd (P93075) v1

Overview
NameLcy07g003160
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr07: 13037642 .. 13037806 (-)
RNA-Seq ExpressionLcy07g003160
SyntenyLcy07g003160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACCGTGAAATTCTCGATGAACTGGATGAGGTGGATTTTACGTCGGCTACAACTGATGGTGAGAATATTAATTTCATTGAGACTTCCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGCTTGGGAGTTACGTAATAGCTAA

mRNA sequence

ATGGTTGACCGTGAAATTCTCGATGAACTGGATGAGGTGGATTTTACGTCGGCTACAACTGATGGTGAGAATATTAATTTCATTGAGACTTCCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGCTTGGGAGTTACGTAATAGCTAA

Coding sequence (CDS)

ATGGTTGACCGTGAAATTCTCGATGAACTGGATGAGGTGGATTTTACGTCGGCTACAACTGATGGTGAGAATATTAATTTCATTGAGACTTCCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAGATGTTTTCGGCTTGGGAGTTACGTAATAGCTAA

Protein sequence

MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRNS
Homology
[Close]
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match: A0A5A7UHX1 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00150 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M D +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 214 MTDFDIEDNIDEVDSTHATTTVDDIHYIETSNEWSQWRDDLAEEMFSDWELRN 266

[Close]
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match: A0A5D3DV38 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00230 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 209 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRN 261

[Close]
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match: A0A5A7U2U5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G002280 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 231 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRN 283

[Close]
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match: A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +ILD++DEVD T  TT G++I++IET +EW++WRDELA++MFS WELRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

[Close]
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match: A0A5A7UFY9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001210 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D++DEVD T ATT G++IN+IET++EW++W+DELAE+MFS WEL N
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHN 208

[Close]
BLAST of Lcy07g003160 vs. NCBI nr
Match: TYK27175.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-10
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 209 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRN 261

[Close]
BLAST of Lcy07g003160 vs. NCBI nr
Match: KAA0054744.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-10
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M D +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 214 MTDFDIEDNIDEVDSTHATTTVDDIHYIETSNEWSQWRDDLAEEMFSDWELRN 266

[Close]
BLAST of Lcy07g003160 vs. NCBI nr
Match: KAA0048587.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-10
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D +DEVD T ATT  ++I++IETS+EWS+WRD+LAE+MFS WELRN
Sbjct: 231 MTNFDIQDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSEWELRN 283

[Close]
BLAST of Lcy07g003160 vs. NCBI nr
Match: KAA0033880.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +ILD++DEVD T  TT G++I++IET +EW++WRDELA++MFS WELRN
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

[Close]
BLAST of Lcy07g003160 vs. NCBI nr
Match: KAA0053146.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 32/53 (60.38%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1   MVDREILDELDEVDFTSATTDGENINFIETSDEWSRWRDELAEQMFSAWELRN 54
           M + +I D++DEVD T ATT G++IN+IET++EW++W+DELAE+MFS WEL N
Sbjct: 156 MTNIDIEDDIDEVDSTHATTAGDDINYIETTNEWTQWKDELAEEMFSDWELHN 208

The following BLAST results are available for this feature:
BLAST of Lcy07g003160 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g003160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UHX13.8e-1064.15Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3DV383.8e-1062.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2U53.8e-1062.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BQ115.0e-1060.38Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7UFY95.0e-1060.38Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of Lcy07g003160 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK27175.17.9e-1062.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054744.17.9e-1064.15putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0048587.17.9e-1062.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033880.11.0e-0960.38putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nucleas... [more]
KAA0053146.11.0e-0960.38putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01550.1 putative nucleas... [more]
BLAST of Lcy07g003160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy07g003160.1Lcy07g003160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding