Lcy06g024160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g024160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L17
Location	Chr06: 48664748 .. 48667192 (-)
RNA-Seq Expression	Lcy06g024160
Synteny	Lcy06g024160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCCCGTGCTCAAGCCCTAGAGACAACCTACCCTTATCTTGTTATCCACATACCACAGTCTGGGACAACCGTAAAATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGGTAATTCCATTTCCTCTCATTCGTTACTTATGTAGCCCCATCTAATTTGATTTTTCATCTGCCAATTCATGCGTCTACTCTGCTTCTAGTGGCTGATTGGTTCATGTCCTATGAATTGAATAGTTCTGCAATAGTTTATTGTTATCGATTTCGATTTCTATTTGAATTGATACGTCCCCTTTATTCGGTAGTGTTTTGCTACAAATATTGTACCGAAGTCTCCTGCTAATTTTGGTAACGACGAGAAACTTGAGTTCATATTCGCGGAAAATGAAACGTTGATCACAGTTTGTTCGACACCCATTGAGTAACAATAGGAGAGAAAATGTGAAAATACTTAACTTTTTAATATAATTTTCTTCATGTAAGACTAACCGAGAGGGAGCCTTCCTTCTTTGTTGTGCCCTGCGAGCGAATATTTATTTCCATTTACCAATCGAACAATTGCCAAATACAGGATTAGATTGGCTGGTTTTACGTGGTCCATCATAGTTCAGAATTCTTTCAAAGGGGTTTGATTGGTGGGCACCTTAAGGATTGTCATAGGAATGACATTTAGTCTTTGGTTGATGTTTTAATCGTATTACTAGGCCTGAAATTATGAGAAATACGCCCATTGAAGTAGGTGGATTTTCAGGATTTATATCATTAAGTCCATTCTCCATCAACTTTCATTTTCTACTCCTACGCATTTAAAAGCACGACAAGTAAAATATTTTCTTCCGTCGCCTTGTAGGTTGTAGCTACCTACGGGTCCTACACAAAATTTCTTCCCTTTGCTCCTTTGCTTAGGTTTTCCTTGCCTCTTATGTATTCAGACATAAATTGGACACCTGTCTGTTGGGCACCATACTTTTATTCCCAACATTTTGCGCCCATATTACTGAGCAGTCAATATCACCTGCTTACTTAGTACTAGGTTGAGTATAAACTTAACATATTAGATTAAAGTCTTATGCACATGATGTAAATGCTCTCAAATACTGCTCTCGTGGGGATTATTATTACTTTCACATATCAATTGATCAACTAAGTTAACGTTTCAACATTAGTATTTGTAAGATAATATGAATTCCTAGATGCACTTGTTATACAAATACTCTGCATTTGAGTTTATGAATTCAAGCCTTAGTGGCTGAGGATTGTCAAAGTTTCTTGACGTTGAAGATCGTAGAGACTCAAGTAGTTACTTGTAAGATTAGATGATGATGTATGTCATAAGCTAGCCTAGACCCACAATTATAATTATAATAAAAGTAATATGTAGTCACTTGTTACATAAATCTCATCAAATTGAAGGAATTATTTTAAGATTATAAGCTAATAGCACATGGGTGATTCATACAAGTTTCTGGGAGCAAGACCTTCAAACAGTTCCTTTCCGTGTATTAACTGATGTAGAACCTGTGTTGCCTTGTCCATCATGCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTCATGTTTGTATCAGTGAAGTCGATCAATTCTAGGAATGGTGATGAGGTTTAATCCTTTTTTGAGGCGTTGCCACATATATGATCATAAACCTTGTATTAATATCTGCATATATACATGCATGAAGCTCATAATTAGTTTGTCAAGTGCAATTCGGTATACATTATGGGGCTTGGTCAATTTGTTATTTGAATTCAAACTACATTTAGAAGATATTTGGTTGGCTGGAGGCTCACGATGACTGTGTATGTTCTAACCTGATTAAGATCGTCCTCTGTTAACTTTGTTGTTGATCA

mRNA sequence

CTCGCCCGTGCTCAAGCCCTAGAGACAACCTACCCTTATCTTGTTATCCACATACCACAGTCTGGGACAACCGTAAAATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTCATGTTTGTATCAGTGAAGTCGATCAATTCTAGGAATGGTGATGAGGTTTAATCCTTTTTTGAGGCGTTGCCACATATATGATCATAAACCTTGTATTAATATCTGCATATATACATGCATGAAGCTCATAATTAGTTTGTCAAGTGCAATTCGGTATACATTATGGGGCTTGGTCAATTTGTTATTTGAATTCAAACTACATTTAGAAGATATTTGGTTGGCTGGAGGCTCACGATGACTGTGTATGTTCTAACCTGATTAAGATCGTCCTCTGTTAACTTTGTTGTTGATCA

Coding sequence (CDS)

ATGGCAATGGCGATTACAACGGCAACGGCAACGGCAAACAGCCGATGGAGCCTAACAACATTGAGGTCAGCGCTACCTTCTATGGGAGTAGAAATTCATACTCCATCTCGCGTGAGCTTCCCGTCATCAAATGGTCGAATCAGTTGCAGAACCTGCAGCAAACCGATCGCTTCCTTTTCGGGTCTATGTCCTCTGAACCCTCTCATTTCCACTGGCTTATCAGATTACAACAGCTTTGAACAAAACTTCACAATTGTTGATAGTGGTAGCCGATTTTTTGCCATGAGACATGGCAAGCGCGTACCTAAGCTCAACAGGCCTCCTGACCAACGGCGTGCATTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGATCAAGAGCAAGTGCTATACGTAAGTATGTTGACAAAATGATCACATTAGCGAAGGATGGTTCTTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTCCACGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATACACCAGAATTATAAGAACATTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGA

Protein sequence

MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

Homology

[Close]

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.9e-76
Identity = 150/214 (70.09%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGR----ISCRTCSKPI 60
           M+MA+ T T + +  WS+++L+SALPS        + +  PSS+ R    +     S  +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPS-------TASLRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S GL D+ SFE  F IVD G R +AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR+RASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.8e-74
Identity = 143/204 (70.10%), Postives = 168/204 (82.35%), Query Frame = 0


Query: 10  ATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISC---RTCSKPIASFSGLCPLN 69
           A+A++ WS++ L+SALPS+     +  R S   S  R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 70  PLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 129
           PL+S    D  SFE +FT++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 130 RIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 189
           RIKTT++RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 190 GYTRIIRTLPRRGDNAPMAYIELV 211
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

[Close]

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-57
Identity = 107/126 (84.92%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 85  IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDK 144
           ++D+G RFFAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR++ASA+RKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 145 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 204
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 205 AYIELV 211
           AYIELV
Sbjct: 121 AYIELV 126

[Close]

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.4e-41
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSL 154
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT++RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.0e-41
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSL 154
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT++RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 210
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

[Close]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 189/210 (90.00%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMA T  TA  NSRWSLT LR+ALPS+GVEIHTP+RVSFPS+ GR+SCRTCSKPIASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGLSD++SFE NFTIVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 9.1e-100
Identity = 188/210 (89.52%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR+S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 188/210 (89.52%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           M+MAITTATATAN RWS TTLRSALPS+G EI T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG +DYN FE NF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 187/210 (89.05%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAITTATATANSRWS +++RSALP + V + TPSRVSFPSSNGR S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.6e-96
Identity = 187/210 (89.05%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAIT  TATAN RWS TTLRSALPS+G E  T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG +DYN FE NF IVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Lcy06g024160 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 378.3 bits (970), Expect = 4.5e-101
Identity = 189/210 (90.00%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMA T  TA  NSRWSLT LR+ALPS+GVEIHTP+RVSFPS+ GR+SCRTCSKPIASFS
Sbjct: 1   MAMAFT--TAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGLSD++SFE NFTIVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Lcy06g024160 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.9 bits (956), Expect = 1.9e-99
Identity = 188/210 (89.52%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR+S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SDYNSFEQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Lcy06g024160 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAIT  TATAN RWS TTLRSALPS+  EI TPSRVSFP SN R++ RTCSKPIASFS
Sbjct: 1   MAMAIT--TATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGL DYN FE NF IVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Lcy06g024160 vs. NCBI nr
Match: XP_023540903.1 (50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 187/210 (89.05%), Postives = 199/210 (94.76%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           MAMAITTATATANSRWS +++RSALPS+ V + TPSRVSFPSSNGR S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SDYNS+EQNFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSYEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Lcy06g024160 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.7e-98
Identity = 188/210 (89.52%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGRISCRTCSKPIASFS 60
           M+MAITTATATAN RWS TTLRSALPS+G EI T +RVSFP SN R+S RTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG +DYN FE NF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR+RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Lcy06g024160 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-77
Identity = 150/214 (70.09%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MAMAITTATATANSRWSLTTLRSALPSMGVEIHTPSRVSFPSSNGR----ISCRTCSKPI 60
           M+MA+ T T + +  WS+++L+SALPS        + +  PSS+ R    +     S  +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPS-------TASLRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISTGLSDYNSFEQNFTIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S GL D+ SFE  F IVD G R +AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR+RASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Lcy06g024160 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-24
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL+KH RI+TT ++A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of Lcy06g024160 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-23
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRSRASAIRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL++H RI+TT ++A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of Lcy06g024160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	3.9e-76	70.09	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	2.8e-74	70.10	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	1.1e-57	84.92	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	2.4e-41	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	7.0e-41	71.30	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of Lcy06g024160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXR7	2.2e-101	90.00	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I1G7	9.1e-100	89.52	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L9N9	1.3e-98	89.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A6J1GDC0	1.3e-98	89.05	50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3B652	1.6e-96	89.05	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]

BLAST of Lcy06g024160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157331.1	4.5e-101	90.00	50S ribosomal protein L17, chloroplastic [Momordica charantia]	[more]
XP_022971252.1	1.9e-99	89.52	50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri...	[more]
XP_038906261.1	1.2e-98	90.95	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_023540903.1	1.2e-98	89.05	50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_004137669.1	2.7e-98	89.52	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]

BLAST of Lcy06g024160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	2.8e-77	70.09	Ribosomal protein L17 family protein	[more]
AT5G09770.1	6.1e-24	48.15	Ribosomal protein L17 family protein	[more]
AT5G64650.1	3.0e-23	47.22	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 85..210 e-value: 2.6E-50 score: 171.6
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 95..210
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 114..210 e-value: 1.9E-34 score: 118.5
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 101..210 e-value: 1.1E-42 score: 142.8
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 46..210
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 99..210 score: 26.166737
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 46..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g024160.1	Lcy06g024160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome