Lcy06g023160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g023160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr06: 47923349 .. 47926162 (-)
RNA-Seq Expression	Lcy06g023160
Synteny	Lcy06g023160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAGCTAATATCACATAATTTCGTAAGTTTAGAGAGTTGTTTCTGCAGTATTTCAGTACCACTCAAATATAAATTTCATTTCATCTCAGATGAGAAAATTTTTTATCCTAAATTCTAAATTCCAATTAACCAAATCAGATGGCGTGGGCTCCATCTCCATTTGAAATCAAAAGATGCTATCCAGCCAGCCAAACAGAACAACCACAATCACAGCCATGGAAACACTATTTTCAATAGGCCCCAATGAAACCAGATAAGGCAAAGATAAGGCCCTCAGACCTCAGACCTTCTCCCCCGTCAGATGGATACACTCTCTTCATCCAACGGCCACAATGTCCCCACCAAACAGCCACCAAATTCCCCATATAACACCTCCAAATTCCAACCACCATTACATCAACCTCCCACCTCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCGCATCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGGGCACAGGCCCGATTCTCATTCGGAAAAGGGAAACAAAAAAGCCCACCGAAGAAATCGTCAAAGCCCAGCTCGGACCGGCCGCTCTGGTACCCGGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGCAAGCCAGCGGAGTACTTGCAGTTCGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTCGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTACGTAAGCTTCTTCTAAGAGAGAGAGGGAGATGATCTACGTATATTATACATTGGGTGGTGATGGAAATTTATTCATTTCATATAGAGCAATTTTATGGTAATTGTACAATGAGGACGATGATGAAACTTTTAAATTTGTGTTAAATAATAGGTCTCTGAATTAGTATATAAATTTCAATTTCCTGTCTCATCGGTCTCAAAATTTAATGGATGTTTGGTCCAAGAGGATAGAGTTATAAAATCTAGTGTTGTTTTATCTTAAGAATTGGACTCTACACTTGGATGTTGTATGTTCTCGAGTCAACTCTTACCTCATAACTCCTTGAGTCAAATACTCCTTAATGATTTTTAACTTTCAATTTTGTGTGTTGGTTGGTGACATGTTCAAAAGTTTTTAATATTAATTGACCTAGATTTTATGTTTAGTAGTTCTTTAAATTTTAAATTTTGTGTGTTAATAAATTCGTGTATTTTTTTAAAAAAAATTGAATAGGTTTAGGACTTAATAAACACACAGTTGAAAATTCAGGTCCCGTTTGATAACAATTTGGTTTTTGAAAATTATGCTTGTTTTCTCTCAAGTTCCTTGTCACAGTTTTCATTTTTTGTTAAGTAGACATTTGAGATCTTGGTCAAATTCCAAAAAAAAAAAAAAACAAGTTTTTGAAAACTACTTCTTTTTTTTTTTTTTTTTTTTTTTTTCAAAATTTGACTTGGTTTTTGAAAACATGGGAGGGTTGTGGATAACAAAACAAATAAAGTTGTGGATGAAAGTAGTGTTTATAAGCTTAATTTTCAAAAACAAAAAACGAAATGGTTATCAAACGAGGTTTTAGAAATCTATTGGAAGTGTTAAGACTTATTATACATTTTAAAATTTTAAGTTAATAGCTCATTAAACCGTTATTAAAATTTAGGGTTGAAATAGATATAAACCTGAAAGTTCATCCTTTTGATATTTAACCAAAAGTTCATGAATCCTTTTGATATTTAGGTTAATTTTATTTTAGTTAAAAGATCAACCAACCTTGATGTGAGTCAATTTTAAAATTAAAAACTTTTAATTTAATCAATTTACATTAGAAAAAAAAAACTCTTAGCATTTTCATAGCATCAATTTCATTTACAAACTATGATTTTCCTTTCTGAACTTTAATGATGTTGCACTTTACTTCGTTCTTAAAATTTTTTATTTGAATCATAAACTTGGACAAGTGTTCTACTTAATATTTAAATACTACAATCTAGCTATAAAATAAAGGAGAATACTTGAATCCGAAAATTTGACATGTGAAAGAAAAAAATAAAAGTAAAAGAATGGTCTCATTCAACTAATATAGGGATTATTAGGGATTAGAGTTTAAATTGATTAATGAATTTGAAAGGTAAAGATTAAATTTGACTAACCGATGAGAAAAAAACAAGTTGAAAATGTATATTTATTTCAATCTCTAGAGAATATGGTGAACTGAAAATGTTTATTTGCAAATGTGTGTTTCAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGACAGCCACTTCCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAAAGAAACGCCGAGCTCGACCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACGTTCTTCTTTTCATCCTCTTGA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAGCTAATATCACATAATTTCGTAAGTTTAGAGAGTTGTTTCTGCAGTATTTCAGTACCACTCAAATATAAATTTCATTTCATCTCAGATGAGAAAATTTTTTATCCTAAATTCTAAATTCCAATTAACCAAATCAGATGGCGTGGGCTCCATCTCCATTTGAAATCAAAAGATGCTATCCAGCCAGCCAAACAGAACAACCACAATCACAGCCATGGAAACACTATTTTCAATAGGCCCCAATGAAACCAGATAAGGCAAAGATAAGGCCCTCAGACCTCAGACCTTCTCCCCCGTCAGATGGATACACTCTCTTCATCCAACGGCCACAATGTCCCCACCAAACAGCCACCAAATTCCCCATATAACACCTCCAAATTCCAACCACCATTACATCAACCTCCCACCTCTCCGCCATGGCAACCACCACAAACGCCGCCGCCGCCGCATCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGGGCACAGGCCCGATTCTCATTCGGAAAAGGGAAACAAAAAAGCCCACCGAAGAAATCGTCAAAGCCCAGCTCGGACCGGCCGCTCTGGTACCCGGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGCAAGCCAGCGGAGTACTTGCAGTTCGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTCGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGACAGCCACTTCCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAAAGAAACGCCGAGCTCGACCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACGTTCTTCTTTTCATCCTCTTGA

Coding sequence (CDS)

ATGGCAACCACCACAAACGCCGCCGCCGCCGCATCCTCCTTCATCGGAACCCGCCTCCCCGTCGCCCCATCCGGGTCGGGTCGGGCACAGGCCCGATTCTCATTCGGAAAAGGGAAACAAAAAAGCCCACCGAAGAAATCGTCAAAGCCCAGCTCGGACCGGCCGCTCTGGTACCCGGGGGCGGTGGCGCCGGAGTGGCTGGACGGGAGCTTGGTGGGGGACTATGGGTTCGACCCATTTGGGTTGGGCAAGCCAGCGGAGTACTTGCAGTTCGAATTGGACTCGCTGGACCAGAACTTGGCGAAGAATGTGGCTGGCGATGTGATTGGGACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTTTTTGGGTTGCAGAGGTTTCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCTATGTTGGCTACGCTTGGTGCTCTCACTGTCGAATGGCTCACCGGTGTTACCTGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGACAGCCACTTCCATTCTCAATATCAACATTGATATGGATCGAAGTTCTGGTAATTGGCTACATTGAGTTTCAAAGAAACGCCGAGCTCGACCCCGAGAAGAGGCTTTACCCCGGGGGCAAGTACTTCGATCCCCTCGGCTTGGCAGCCGATCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATCAAGCACGCTCGTCTCGCCATGGTTGCCTTCCTCGGCTTCGCTGTTCAGGCCGCTGCCACGGGCAAAGGCCCGCTCAATAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACGTTCTTCTTTTCATCCTCTTGA

Protein sequence

MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSSS

Homology

[Close]

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 5.0e-138
Identity = 247/289 (85.47%), Postives = 265/289 (91.70%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRL-PVAPSGSGRAQARFSFGKGKQKSPPKKSSKP--SSDRPLW 60
           MA T+ AAAAASS +GTR+ P    GSGR  A F F  GK+K+ PKKS+K   ++DRPLW
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGF--GKKKAAPKKSAKKTVTTDRPLW 60

Query: 61  YPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENAD 120
           YPGA++P+WLDGSLVGDYGFDPFGLGKPAEYLQF++DSLDQNLAKN+AGDVIGTR E AD
Sbjct: 61  YPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAAD 120

Query: 121 VKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSS 180
            KSTPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELV+GSS
Sbjct: 121 AKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSS 180

Query: 181 YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATL 240
           YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLAADPEK A L
Sbjct: 181 YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQL 240

Query: 241 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 241 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287

[Close]

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 5.4e-132
Identity = 237/283 (83.75%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 5   TNAAAAASSFIGTR-LPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGAVA 64
           T+ AAAASS +GTR +    S S R  ARF F  G +K+ PKK+    SDRPLW+PGA +
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGF--GTKKASPKKAKTVISDRPLWFPGAKS 63

Query: 65  PEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPF 124
           PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN+ G+VIGTR E  D KSTPF
Sbjct: 64  PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPF 123

Query: 125 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 184
           QPYSEVFGLQRFRECELIHGRWAMLATLGA+TVEWLTGVTWQDAGKVELV+GSSYLGQPL
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPL 183

Query: 185 PFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIK 244
           PFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLA+DP KKA LQLAEIK
Sbjct: 184 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 243

Query: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           HARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 244 HARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284

[Close]

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.4e-110
Identity = 203/276 (73.55%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQAR--FSFGKGKQKSPPKKSS--KPSSDRPL 60
           MATTT  AAAAS   G R+     G+GR QAR  FSFGK K   PPKKS   +   DR +
Sbjct: 1   MATTT--AAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLV 60

Query: 61  WYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENA 120
           W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++
Sbjct: 61  WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 120

Query: 121 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGS 180
           ++K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+ VE LTG+ WQDAGKVELVEGS
Sbjct: 121 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGS 180

Query: 181 SYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKAT 240
           SYLGQPLPFS++TLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG YFDPLGLAADPEK  T
Sbjct: 181 SYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDT 240

Query: 241 LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 273
           L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 LKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 252.7 bits (644), Expect = 5.1e-66
Identity = 133/225 (59.11%), Postives = 159/225 (70.67%), Query Frame = 0


Query: 56  LWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFEN 115
           LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G V       
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV------E 111

Query: 116 ADVKSTP--------FQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDA 175
           A V++TP          PYSEVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W +A
Sbjct: 112 AIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA 171

Query: 176 GKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGL 235
           GKVEL +G+SY G  LPFSI+ LIWIEV+++G  EF RN+E +PEKR YPGG  FDPL L
Sbjct: 172 GKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKL 231

Query: 236 AADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWA 272
           A++ E++A  L+ AEIKHARLAMV+F G+ VQA +TG+G L + A
Sbjct: 232 ASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-38
Identity = 97/233 (41.63%), Postives = 127/233 (54.51%), Query Frame = 0


Query: 57  WYPGAVAPEWLDGSLVGDYGFDPFGLGK-PAEYLQFELDSLDQNLAKNVAGDVIGTRFEN 116
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 117 ADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEG 176
                           L+R++E ELIH RWAMLA  G L  E L    W  A +   + G
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 177 --SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPE 236
             ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG + DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 237 KKATLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285
           K   L++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL
Match: A0A7J7HME2 (Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis OX=4442 GN=HYC85_006483 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.7e-144
Identity = 256/287 (89.20%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MA TT +AAA SSFIGTR P   SGSGR QARF F  G +K+P KK +KP SDRPLW+PG
Sbjct: 56  MAATT-SAAATSSFIGTRFPEVHSGSGRVQARFGF--GAKKAPAKKFAKPGSDRPLWFPG 115

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDG+LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGD+IGTRFE+ADVKS
Sbjct: 116 AKAPEWLDGTLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRFESADVKS 175

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG+TWQDAGKVEL+EGSSYLG
Sbjct: 176 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELLEGSSYLG 235

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGKYFDPLGLA+DPEKKATLQLA
Sbjct: 236 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLASDPEKKATLQLA 295

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 288
           EIKHARLAM+AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF
Sbjct: 296 EIKHARLAMIAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 339

[Close]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL
Match: A0A6P4AP94 (Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107430831 PE=3 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.4e-144
Identity = 265/286 (92.66%), Postives = 270/286 (94.41%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MATTT AAAAASSFIGTRLP   S SGR QARF FG GK KS PKKS KPSSDRPLWYPG
Sbjct: 1   MATTT-AAAAASSFIGTRLPDVYSNSGRIQARFGFG-GK-KSKPKKSIKPSSDRPLWYPG 60

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGDVIGTR E +DVKS
Sbjct: 61  ATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDVIGTRSEASDVKS 120

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGA+TVE LTGVTWQDAGKVELVEGSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEGLTGVTWQDAGKVELVEGSSYLG 180

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK+FDPLGLAADPEKKATLQLA
Sbjct: 181 QPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           EIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 283

[Close]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL
Match: A0A4S4DT89 (Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029107 PE=3 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143
Identity = 255/287 (88.85%), Postives = 270/287 (94.08%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MA TT +AAA SSFIGTR P   SGSGR QARF F  G +K+P KK +KP SDRPLW+PG
Sbjct: 1   MAATT-SAAATSSFIGTRFPEVHSGSGRVQARFGF--GAKKAPAKKFAKPGSDRPLWFPG 60

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDG+LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGD+IGTRFE+ADVKS
Sbjct: 61  AKAPEWLDGTLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRFESADVKS 120

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG+TWQDAGKVEL+EGSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELLEGSSYLG 180

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGKYFDPLGLA+DPEKKATLQLA
Sbjct: 181 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLASDPEKKATLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 288
           EIKHARLAM+A LGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF
Sbjct: 241 EIKHARLAMIASLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 284

[Close]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL
Match: B9SQ36 (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RCOM_0644360 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.4e-143
Identity = 258/286 (90.21%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MAT+T AAAAASSF+GTRLP   S SGR QARF F  G +KS PK+S+KP+SDRPLWYPG
Sbjct: 1   MATST-AAAAASSFMGTRLPDVYSNSGRVQARFGF--GTKKSAPKRSAKPTSDRPLWYPG 60

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGD+IGTR E ADVKS
Sbjct: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKS 120

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLA DPEKKATLQLA
Sbjct: 181 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           EIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID F
Sbjct: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNF 283

[Close]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL
Match: A0A6J1DCA5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019415 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.0e-143
Identity = 256/290 (88.28%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MA  T  AAA SSFIGTRLP     SGR QARFSF  GK+K+ PKKSSK  SDRPLW+PG
Sbjct: 1   MAAATATAAATSSFIGTRLPDVRPSSGRVQARFSF--GKKKTAPKKSSKQISDRPLWFPG 60

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDGSLVGDYGFDPFGLGKPAEYLQ++LDSLDQNLAKNVAGD+IGTRFEN+DVKS
Sbjct: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKS 120

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELVEGSSYLG
Sbjct: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK+FDPLGLA DPEKKA LQLA
Sbjct: 181 QPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSS 291
           EIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+F  SS
Sbjct: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSSSS 288

[Close]

BLAST of Lcy06g023160 vs. NCBI nr
Match: XP_038904041.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 547.0 bits (1408), Expect = 1.0e-151
Identity = 272/284 (95.77%), Postives = 276/284 (97.18%), Query Frame = 0


Query: 8   AAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSS-KPSSDRPLWYPGAVAPEW 67
           AAAASSFIGTRLPVAP+GSGR QARFSF  GKQKSPPKKSS KP SDRPLW+PGAVAPEW
Sbjct: 2   AAAASSFIGTRLPVAPAGSGRVQARFSF--GKQKSPPKKSSKKPVSDRPLWFPGAVAPEW 61

Query: 68  LDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPY 127
           LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPY
Sbjct: 62  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPY 121

Query: 128 SEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 187
           SEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 122 SEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 181

Query: 188 ISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHAR 247
           ISTLIWIEVLVIGYIEFQRN ELDPEKRLYPGGKYFDPLGLAADPEKK TLQLAEIKHAR
Sbjct: 182 ISTLIWIEVLVIGYIEFQRNGELDPEKRLYPGGKYFDPLGLAADPEKKVTLQLAEIKHAR 241

Query: 248 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFFSS 291
           LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT F+SS
Sbjct: 242 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTLFYSS 283

[Close]

BLAST of Lcy06g023160 vs. NCBI nr
Match: KAF3448904.1 (hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis])

HSP 1 Score: 525.4 bits (1352), Expect = 3.1e-145
Identity = 263/287 (91.64%), Postives = 272/287 (94.77%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSS-KPSSDRPLWYP 60
           MATTT AAA ASSF+GTRLP   S SGR QARF F  G +K PPKK+S KPS+DRPLWYP
Sbjct: 1   MATTT-AAATASSFLGTRLPDVYSNSGRVQARFGF--GAKKRPPKKTSVKPSNDRPLWYP 60

Query: 61  GAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVK 120
           GA APEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGDVIGTRFENADVK
Sbjct: 61  GAQAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDVIGTRFENADVK 120

Query: 121 STPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYL 180
           STPFQPY+EVFGLQRFRECELIHGRWAMLATLGALTVEWLTG+TWQDAGKVELVEGSSYL
Sbjct: 121 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYL 180

Query: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQL 240
           GQPLPFSI+TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK+FDPLGLAADPEKKATLQL
Sbjct: 181 GQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQL 240

Query: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI DTF
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 284

[Close]

BLAST of Lcy06g023160 vs. NCBI nr
Match: KAF5953627.1 (hypothetical protein HYC85_006483 [Camellia sinensis])

HSP 1 Score: 521.9 bits (1343), Expect = 3.5e-144
Identity = 256/287 (89.20%), Postives = 271/287 (94.43%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MA TT +AAA SSFIGTR P   SGSGR QARF F  G +K+P KK +KP SDRPLW+PG
Sbjct: 56  MAATT-SAAATSSFIGTRFPEVHSGSGRVQARFGF--GAKKAPAKKFAKPGSDRPLWFPG 115

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDG+LVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGD+IGTRFE+ADVKS
Sbjct: 116 AKAPEWLDGTLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRFESADVKS 175

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG+TWQDAGKVEL+EGSSYLG
Sbjct: 176 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELLEGSSYLG 235

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGKYFDPLGLA+DPEKKATLQLA
Sbjct: 236 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLASDPEKKATLQLA 295

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 288
           EIKHARLAM+AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF
Sbjct: 296 EIKHARLAMIAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 339

[Close]

BLAST of Lcy06g023160 vs. NCBI nr
Match: XP_015897179.1 (chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 265/286 (92.66%), Postives = 270/286 (94.41%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPG 60
           MATTT AAAAASSFIGTRLP   S SGR QARF FG GK KS PKKS KPSSDRPLWYPG
Sbjct: 1   MATTT-AAAAASSFIGTRLPDVYSNSGRIQARFGFG-GK-KSKPKKSIKPSSDRPLWYPG 60

Query: 61  AVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKS 120
           A APEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN+AGDVIGTR E +DVKS
Sbjct: 61  ATAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDVIGTRSEASDVKS 120

Query: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYSEVFGLQRFRECELIHGRWAMLATLGA+TVE LTGVTWQDAGKVELVEGSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEGLTGVTWQDAGKVELVEGSSYLG 180

Query: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGK+FDPLGLAADPEKKATLQLA
Sbjct: 181 QPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           EIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 283

[Close]

BLAST of Lcy06g023160 vs. NCBI nr
Match: XP_028072131.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Camellia sinensis])

HSP 1 Score: 518.8 bits (1335), Expect = 2.9e-143
Identity = 255/286 (89.16%), Postives = 268/286 (93.71%), Query Frame = 0


Query: 2   ATTTNAAAAASSFIGTRLPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGA 61
           ATT  AAAA SSF+GTRL    SGSGR QARF F  G++K+PPKK +K   DRPLWYPGA
Sbjct: 3   ATTAAAAAATSSFLGTRLADLYSGSGRVQARFGF--GRKKAPPKKIAKQGFDRPLWYPGA 62

Query: 62  VAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKST 121
            APEWLDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN AGDVIGTRFE+ADVKST
Sbjct: 63  KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNSAGDVIGTRFESADVKST 122

Query: 122 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQ 181
           PFQPY+EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVEL+EGSSYLGQ
Sbjct: 123 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELIEGSSYLGQ 182

Query: 182 PLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAE 241
           PLPFSI+TLIWIEV+VIGYIEFQRNAELDPEKRLYPGGK+FDPLGLA+DPEKKATLQLAE
Sbjct: 183 PLPFSITTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLASDPEKKATLQLAE 242

Query: 242 IKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFF 288
           IKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIIDTFF
Sbjct: 243 IKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFF 286

[Close]

BLAST of Lcy06g023160 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 491.9 bits (1265), Expect = 3.6e-139
Identity = 247/289 (85.47%), Postives = 265/289 (91.70%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRL-PVAPSGSGRAQARFSFGKGKQKSPPKKSSKP--SSDRPLW 60
           MA T+ AAAAASS +GTR+ P    GSGR  A F F  GK+K+ PKKS+K   ++DRPLW
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGF--GKKKAAPKKSAKKTVTTDRPLW 60

Query: 61  YPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENAD 120
           YPGA++P+WLDGSLVGDYGFDPFGLGKPAEYLQF++DSLDQNLAKN+AGDVIGTR E AD
Sbjct: 61  YPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAAD 120

Query: 121 VKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSS 180
            KSTPFQPYSEVFG+QRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELV+GSS
Sbjct: 121 AKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSS 180

Query: 181 YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATL 240
           YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLAADPEK A L
Sbjct: 181 YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQL 240

Query: 241 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 241 QLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287

[Close]

BLAST of Lcy06g023160 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 471.9 bits (1213), Expect = 3.8e-133
Identity = 237/283 (83.75%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 5   TNAAAAASSFIGTR-LPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGAVA 64
           T+ AAAASS +GTR +    S S R  ARF F  G +K+ PKK+    SDRPLW+PGA +
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGF--GTKKASPKKAKTVISDRPLWFPGAKS 63

Query: 65  PEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPF 124
           PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN+ G+VIGTR E  D KSTPF
Sbjct: 64  PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPF 123

Query: 125 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 184
           QPYSEVFGLQRFRECELIHGRWAMLATLGA+TVEWLTGVTWQDAGKVELV+GSSYLGQPL
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPL 183

Query: 185 PFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIK 244
           PFSISTLIWIEVLVIGYIEFQRNAELD EKRLYPGGK+FDPLGLA+DP KKA LQLAEIK
Sbjct: 184 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 243

Query: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
           HARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF
Sbjct: 244 HARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284

[Close]

BLAST of Lcy06g023160 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 399.1 bits (1024), Expect = 3.1e-111
Identity = 203/276 (73.55%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQAR--FSFGKGKQKSPPKKSS--KPSSDRPL 60
           MATTT  AAAAS   G R+     G+GR QAR  FSFGK K   PPKKS   +   DR +
Sbjct: 1   MATTT--AAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLV 60

Query: 61  WYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENA 120
           W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++
Sbjct: 61  WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 120

Query: 121 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGS 180
           ++K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+ VE LTG+ WQDAGKVELVEGS
Sbjct: 121 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGS 180

Query: 181 SYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKAT 240
           SYLGQPLPFS++TLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG YFDPLGLAADPEK  T
Sbjct: 181 SYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDT 240

Query: 241 LQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 273
           L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 241 LKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Lcy06g023160 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 255.4 bits (651), Expect = 5.6e-68
Identity = 133/182 (73.08%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 5   TNAAAAASSFIGTR-LPVAPSGSGRAQARFSFGKGKQKSPPKKSSKPSSDRPLWYPGAVA 64
           T+ AAAASS +GTR +    S S R  ARF F  G +K+ PKK+    SDRPLW+PGA +
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGF--GTKKASPKKAKTVISDRPLWFPGAKS 63

Query: 65  PEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENADVKSTPF 124
           PE+LDGSLVGDYGFDPFGLGKPAEYLQF+LDSLDQNLAKN+ G+VIGTR E  D KSTPF
Sbjct: 64  PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPF 123

Query: 125 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 184
           QPYSEVFGLQRFRECELIHGRWAMLATLGA+TVEWLTGVTWQDAGKV  +  SS L   L
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCL 183

Query: 185 PF 186
            F
Sbjct: 184 AF 183

[Close]

BLAST of Lcy06g023160 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 235.0 bits (598), Expect = 7.9e-62
Identity = 119/175 (68.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MATTTNAAAAASSFIGTRLPVAPSGSGRAQAR--FSFGKGKQKSPPKKSS--KPSSDRPL 60
           MATTT  AAAAS   G R+     G+GR QAR  FSFGK K   PPKKS   +   DR +
Sbjct: 1   MATTT--AAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLV 60

Query: 61  WYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDVIGTRFENA 120
           W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQ++ D LDQNLAKNVAGD+IG   E++
Sbjct: 61  WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 120

Query: 121 DVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVE 172
           ++K TPFQPY+EVFG+QRFRECELIHGRWAML TLGA+ VE LTG+ WQDAGKVE
Sbjct: 121 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of Lcy06g023160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	5.0e-138	85.47	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	5.4e-132	83.75	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	4.4e-110	73.55	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	5.1e-66	59.11	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	2.7e-38	41.63	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Lcy06g023160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7HME2	1.7e-144	89.20	Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis OX=4442 GN=H...	[more]
A0A6P4AP94	6.4e-144	92.66	Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba OX=326968 GN=L...	[more]
A0A4S4DT89	1.4e-143	88.85	Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis var. sinensi...	[more]
B9SQ36	2.4e-143	90.21	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RC...	[more]
A0A6J1DCA5	7.0e-143	88.28	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Lcy06g023160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904041.1	1.0e-151	95.77	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
KAF3448904.1	3.1e-145	91.64	hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis]	[more]
KAF5953627.1	3.5e-144	89.20	hypothetical protein HYC85_006483 [Camellia sinensis]	[more]
XP_015897179.1	1.3e-143	92.66	chlorophyll a-b binding protein CP29.2, chloroplastic [Ziziphus jujuba]	[more]
XP_028072131.1	2.9e-143	89.16	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Camellia sinensis]	[more]

BLAST of Lcy06g023160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	3.6e-139	85.47	light harvesting complex photosystem II	[more]
AT3G08940.2	3.8e-133	83.75	light harvesting complex photosystem II	[more]
AT2G40100.1	3.1e-111	73.55	light harvesting complex photosystem II	[more]
AT3G08940.1	5.6e-68	73.08	light harvesting complex photosystem II	[more]
AT2G40100.2	7.9e-62	68.00	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..259 e-value: 2.8E-51 score: 174.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 57..289 e-value: 2.8E-69 score: 235.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..55
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 1..285
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..286
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g023160.1	Lcy06g023160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding