Lcy06g023030 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g023030
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr06: 47758567 .. 47763407 (-)
RNA-Seq Expression	Lcy06g023030
Synteny	Lcy06g023030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCGACTCCAATCGTTGGAGGAACACCAAAACAGAAAACTCAAGAAAATAAAAGAGGAAATTTCTGGGGTAGAGGACGAGGTAGAAGAGGTGCATACCAATTCCAAAACAACAGACAAAACCAGAAATACAATGATGAAAAAGAGGAAACATGGAGACGAAGAGATCAAAGTGGAAAAAGCAACGAAGAAAACGTCGGCGTCCTGAGACCGGAAAATTCCACAGAAGGCAGGAGCTCGCCGGAGAAGGAGACCGTTGGAAAATCCCAAGGCCAGCCAACGGCTAGTGAAGTGTCAGAGCAAAGCAGAATGAAAACAGGAAAAGCGGTGATGGAGACAAATTGTCAGGCGGTGGAAATAGGAAAAATCAGGGATCTAGGACAAAAGTACGTGCCAGACAAAAAAGCTACAAAAGGAATAGTATTAAAGGACCAGACCAGTGAAATGATTACTAGAAAAGAATGGGCAAGTGGAACAGAAAAGGACAAAAAAGGCCCAAGGGCCAAGAATAGCCAATCTGGGCTGGAGAAGGAAATCAATAAAGCCCTGGAAAGAGAAAAACACCTAGAGGAAAAAGAAATATCAGAGATGGACACAAACCAAGACAGCCTTATGTTCAGAGGAGAAGGTAAAAATGTTCGAACATGGAAAAGGCGTGCTAGAGTGGAGAATAACAGTGTTGATTCTGAAAGCTTAAAAGGAGCTACGATAGCAAATGGTAAAAGGAAAAATGAAGGAGATAGTTTGGCAGAGGAAAGCGGAACCAAAAAACCTTGTATACCTAACTTCGAGGTTAACGGAGGGATATCGGCGGAGGCTGATTTTCAGCCCCGCCGGACGCCATGAAAATCTTTTGCTGGAACGTTCGAGGAATGGGGAATCCTCGAACGATCCGCAGCCTAAAGCTCGAGATAAGAAAGAATTCCCCAGATGTTGTGTTTATTTCAGAGTCAAAATGCAGTGAATCAAAGGCAGAATTGGTTAAAAGAAGTTTGGGCTTCGAGTGCTGTTTCTCTGTGGGCAGCAGAGGTAAAAGTGGAGGTCTAGTTTTATATTGGAATAACTCTACTGATATTTTGGTTAGATCATTTTCGCAGGGCCACATTGATGCTACTATAAAAGACAATGACCAAAATTGGAGGTTTACGGGATTCTACGGCGACCCAGACCCATCTAAAAGATCGGATTCTTGGAAACTTTTGGAGAGGCTTAGCGAGTCCTTAAATCTTCCCTGGATTATTGGGGGAGATTTCAATGAGATAATCTTTGACAACGAGAAAGAGGGAGGTTTACCAAAAGACCAAAAAGGCATGGATGCTTTCAGAGAGGTGTTGAGCAATTGTCAGCTGTATGATCCGGGTTTTTGTGGTAACAAATATACTTGGAGAAGGGGGAAAAACCCCCACAATAGAATAAGAGAGAGGCTGGACCGGTTCCTTATTAACCAAGATCTGGATCAAATTTTCAAATCCATAAAGATCCAGCACCTCAATTTCAACTCTTCGGATCACAGACCAATCTTGGCAACTCTGGAAGTAGGAAGGAAAAAACCTCTGAAAAGAAAAAGAAGAAGCAAAAAATTTGAAGAGGCTTGGATAAGAGTCTCGGACAGCAAAAAGATTGTGGAGAGCTCTTGGAAAGAAATTCCGGGAAGAAGCTTTACTGATTACTCCAATAAGCTGAATCGATGCCTTTCCAATCTTCTGAAATGGAACAAAGACAGAATTGGGGGATCCATTAGAGCTGCTATAGACAGAAAGAGAGATGAGATTTTGAGGATGGAAGGAGATGATTCCACGGCAAACCTTGCTTCCATTGGGTTGGCAGAGAAGGAATTGGAAAATCTCCTCAACGAAGAAGAGAGCTATTGGAAACTCCGGTCGAGAGAGGATTGGCTTCAATGGGGTGACAGGAACACGAAGTGGTTCCACCATAAAGCTTCAGAGAGGAAAAAAAGAAACGAGATAAAAGGGCTGTTGAACAGCTCTGGTGTTTGGATTGATGATGAAGATGAAATTGGGAATATAGCCTCCTCATATTTCAAAGATCTCTTCTCCTCTTCGAACCCAAGTGAAAGGAGTATAGACACCTTATTGGAGAGCATTCCCACGAAAATTACAGAAGAGCAGAATAGAAACTTGCTTAGGCCTTTTACGAGGAATGATATTGAAAGAGCTTTAAAAAGTATGAATCCCTCTAAGGCCCCGGGTGAAGATGGTATGCATGCTATGTTTTTCCAACATTACTGGGAAATTGTGGGTGAGGACACCACCAGAATCTGCCTGGAGATTCTTAATAACAAGAATAGTGTGAAACAATTCAACAAGACCCTCATAGCCCTCATTCCTAAGACAAAAAACCCCAAAGCCATGGAGAACTACCGGCCTATTAGTCTCTGTAACGTTATGTATAAGTTGGTGGCTAAGTCTCTTGCTAACAGGATGAAAAAAATCCTCGACGTTATCATCTCGTCGAACCAAGCCGCTTTTGTTCCAAAGAGGCTTATCTCGGACAATGTTATAATGGGTTTTGAATGCATTCATTCTCTAAACAGCAAGAGGAAAGGAAGGAAGGCCACATTGCTATGAAACTGGACATGAGCAAGGCATATGACAGGGTAGAATGGGTGTTTGTGAGAAAGGTCATGCAAAAAATGGGCTTCGCTAGGGATTGGATCTTGAAGATAATGGACTGCATTGAATCAGTGGAATATTCGGTTATAGTAAATGGAGAGCCCCAGGAGTCTTTCATCCCGAATAGGGGCCTGCGACAAGGAGATCCGATCTCGCCTTATATTTTCCTAATCGCTGCTGAAGGCCTTTCAGCTCTTCTTTACAGGGAAGAATCTTTAAACAATTTTAAAGGTCTTAAGGTTAATAGAAGAAGTCCCTCACTTTCTCATTTATTTTTTGCAGATGACAGCCTGATCCTGTGCAGAGCGGATGAGAAAGATTGTAGAACCATAAAGAGAATCCTCTCTATCTACGAAGAAGCTTCTGGTCAAACTATTAACCTGGCGAAATCTTCCTTCATGACAAGCAAGAATATTAACAACGAGGCTGCCAGAATCTTTGGGAACATCCTGGGGATTCCCCATTCAGAGGACCTTGGTTATTATTTAGGGATGCCATCCCAAAATAACAGAAACAAGCAGTCAGTGTTCAAAAAAGTTAAGGAGAGAGTCTGGCGAGTCCTTCAAAGCTGGAAGGAAAAGCTGTTTTCAGCAGGAGGGAAAGAAGTGCTTATAAAATCCATAGCCCAGGCCATCCCGACCTACACTATGAGCTGCTTCAGGCTCCCCACCTCCTTATGCAATGATATTAACAAGATTTGTTCCAATTTTTGGTGGGGAGAATACAAAGGGAAAGGAAAGGCTCACTGGATTAGTTGGAAGGTGCTCTCTACTAGCAAAGACAGAGGAGGGTTAGGCTTTCGCGATCTTTCTTTGTTCAATCAAGCGTTGCTTGCCAAAGCTAGTTGGAGGATTTTGAAGAACCCCAATAGTCTTCTATCCCAGATGCTTAGAGGAAAGTATTTCAAAGGGAGAGATTTTCTAACCGCCCCCTTAGGAAACAATCCTTCTCTAACATGGCGAAGCATATTATGGGGTCGAGACCTTTTCACCAAAGGAATCCGTTGGAAAGTGGGTGATGGCAGACACATTACGATCGATCAAGACCCATGGATAGCTCTAGAAGGCAGTGAAGTGCCATCCCTTTCCAATGAAGAGCTTAGAGGCAAGAGAGTTTGTGAAATCATTGATGATCACGGGTCCTGGAATGAAGCCATAGTGAGAGAATCCTTCTCAGCCATTGACGCTGAAGTTATTCTCAATACCCCTGTCGGCGGGGAAGGCACGAGGGATGAGATAATCTGGAATAGAGAAAAGAAAGGCTTATTCACGGTCAAAAGTGCATACCACCTTGCTGTTCTTCTTTCAAATAGCAAGATGGAATCGCCCTCAACCGTAACTAGCCATGACACCTTCTGGAGGAAATTTTGGAAAATTAAAGCTCTCCCTAAGGCTAAAATCTGTGTTTGGAGGATCATTCATGACTCTCTTCCAACAAGAGTTAATATTCTCAAAAAAGGAATCCCTATTAACTACCTCTGCCCTTTTTGCAGGTCCTCCGAGGAGTCAGCAAAGCACATTTTATGGGACTGTAAGTTGTCTAAGAATTTATGGAAAATTTTTATCCCCCTAACCAACGGTCTGTTTGCGTTAAACAGGGGATCATGGATTCCTAGAGACTACTGGGCTTGGTTGATGGACAATCTAGCGGAAGAAGAATTGGAGATAGCAATCACCATCCTTTGGAGTATTTGGGAGTACAGAAACAAAGTTACCCACACAGAGAGTAAACCAATCTATCAAGAAATCTCCAGAATTATTAGCAGCAAAATAGATTTTCCAAAAGTTGTTTCGAGAACCTACCTGCCGAAGTCGAGTGGAAAAAATCAGCCCACAGTTAAGAACCTTGCGAGTCACGCGATTTGGAAGCCTCCCCCGGATTTATCGCTAAAGCTGAATGTAGATGCCTCCTGGAACGACCAATTCAGAAAAGGTGGCGTCGGTTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCAAGCGCATGCATAATAGGTGGTCAATCAAAGCGTTGGAGGCGAAGGCAGTCTTGGAAGGCCTGATTAGCATCCTTTCAGTTGCGGATCTTCATCCCTCTCTAAGCTCCATATCTCTGTTGGTGGAGTCGGATGCTTCCTCTGTGGTGAATCTCCTCAACGAAGAAGATGAAGATTTTACAGAAATCTCCTTCCTCATTCAGGAGATCTCAAGATTGA

mRNA sequence

ATGAGAGCGACTCCAATCGTTGGAGGAACACCAAAACAGAAAACTCAAGAAAATAAAAGAGGAAATTTCTGGGGTAGAGGACGAGGTAGAAGAGGTGCATACCAATTCCAAAACAACAGACAAAACCAGAAATACAATGATGAAAAAGAGGAAACATGGAGACGAAGAGATCAAAGTGGAAAAAGCAACGAAGAAAACGTCGGCGTCCTGAGACCGGAAAATTCCACAGAAGGCAGGAGCTCGCCGGAGAAGGAGACCGTTGGAAAATCCCAAGGCCAGCCAACGGCTAGTGAAGTGTCAGAGCAAAGCAGAATGAAAACAGGAAAAGCGGTGATGGAGACAAATTGTCAGGCGGTGGAAATAGGAAAAATCAGGGATCTAGGACAAAAGTACGTGCCAGACAAAAAAGCTACAAAAGGAATAGTATTAAAGGACCAGACCAGTGAAATGATTACTAGAAAAGAATGGGCAAGTGGAACAGAAAAGGACAAAAAAGGCCCAAGGGCCAAGAATAGCCAATCTGGGCTGGAGAAGGAAATCAATAAAGCCCTGGAAAGAGAAAAACACCTAGAGGAAAAAGAAATATCAGAGATGGACACAAACCAAGACAGCCTTATGTTCAGAGGAGAAGGTAAAAATGTTCGAACATGGAAAAGGCGTGCTAGAGTGGAGAATAACAGTGTTGATTCTGAAAGCTTAAAAGGAGCTACGATAGCAAATGAGAGTAAACCAATCTATCAAGAAATCTCCAGAATTATTAGCAGCAAAATAGATTTTCCAAAAGTTGTTTCGAGAACCTACCTGCCGAAGTCGAGTGGAAAAAATCAGCCCACAGTTAAGAACCTTGCGAGTCACGCGATTTGGAAGCCTCCCCCGGATTTATCGCTAAAGCTGAATGTAGATGCCTCCTGGAACGACCAATTCAGAAAAGGTGGCGTCGGTTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCAAGCGCATGCATAATAGGTGGTCAATCAAAGCGTTGGAGGCGAAGGCAGTCTTGGAAGGCCTGATTAGCATCCTTTCAGTTGCGGATCTTCATCCCTCTCTAAGCTCCATATCTCTGAGATCTCAAGATTGA

Coding sequence (CDS)

ATGAGAGCGACTCCAATCGTTGGAGGAACACCAAAACAGAAAACTCAAGAAAATAAAAGAGGAAATTTCTGGGGTAGAGGACGAGGTAGAAGAGGTGCATACCAATTCCAAAACAACAGACAAAACCAGAAATACAATGATGAAAAAGAGGAAACATGGAGACGAAGAGATCAAAGTGGAAAAAGCAACGAAGAAAACGTCGGCGTCCTGAGACCGGAAAATTCCACAGAAGGCAGGAGCTCGCCGGAGAAGGAGACCGTTGGAAAATCCCAAGGCCAGCCAACGGCTAGTGAAGTGTCAGAGCAAAGCAGAATGAAAACAGGAAAAGCGGTGATGGAGACAAATTGTCAGGCGGTGGAAATAGGAAAAATCAGGGATCTAGGACAAAAGTACGTGCCAGACAAAAAAGCTACAAAAGGAATAGTATTAAAGGACCAGACCAGTGAAATGATTACTAGAAAAGAATGGGCAAGTGGAACAGAAAAGGACAAAAAAGGCCCAAGGGCCAAGAATAGCCAATCTGGGCTGGAGAAGGAAATCAATAAAGCCCTGGAAAGAGAAAAACACCTAGAGGAAAAAGAAATATCAGAGATGGACACAAACCAAGACAGCCTTATGTTCAGAGGAGAAGGTAAAAATGTTCGAACATGGAAAAGGCGTGCTAGAGTGGAGAATAACAGTGTTGATTCTGAAAGCTTAAAAGGAGCTACGATAGCAAATGAGAGTAAACCAATCTATCAAGAAATCTCCAGAATTATTAGCAGCAAAATAGATTTTCCAAAAGTTGTTTCGAGAACCTACCTGCCGAAGTCGAGTGGAAAAAATCAGCCCACAGTTAAGAACCTTGCGAGTCACGCGATTTGGAAGCCTCCCCCGGATTTATCGCTAAAGCTGAATGTAGATGCCTCCTGGAACGACCAATTCAGAAAAGGTGGCGTCGGTTGGATCCTCCGTGACTCCTCAGGGTCTTCGATCTGTGTGGGCTTCAAGCGCATGCATAATAGGTGGTCAATCAAAGCGTTGGAGGCGAAGGCAGTCTTGGAAGGCCTGATTAGCATCCTTTCAGTTGCGGATCTTCATCCCTCTCTAAGCTCCATATCTCTGAGATCTCAAGATTGA

Protein sequence

MRATPIVGGTPKQKTQENKRGNFWGRGRGRRGAYQFQNNRQNQKYNDEKEETWRRRDQSGKSNEENVGVLRPENSTEGRSSPEKETVGKSQGQPTASEVSEQSRMKTGKAVMETNCQAVEIGKIRDLGQKYVPDKKATKGIVLKDQTSEMITRKEWASGTEKDKKGPRAKNSQSGLEKEINKALEREKHLEEKEISEMDTNQDSLMFRGEGKNVRTWKRRARVENNSVDSESLKGATIANESKPIYQEISRIISSKIDFPKVVSRTYLPKSSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISILSVADLHPSLSSISLRSQD

Homology

[Close]

BLAST of Lcy06g023030 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-08
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 280 KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIK 339
           K L +   W+PPP     LN DASW+D   +GG+GWI+R   G  +  G + +    ++K
Sbjct: 63  KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVK 122

Query: 340 ALEAKAVLEGLISILSVADLHP 362
            LEA A+LEGL ++ ++  L P
Sbjct: 123 LLEASAILEGLRNLTNLGVLRP 144

[Close]

BLAST of Lcy06g023030 vs. ExPASy TrEMBL
Match: A0A1J3C7A8 (Putative ribonuclease H protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR12511_c0_g1_i1_g.40014 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-07
Identity = 34/101 (33.66%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 246 YQEISRIISSKIDFPKVVSRTYLPKSSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWN 305
           Y  +  ++ ++ D  + V  T   KS      +  N +S   WKPPP   LK NVD +W+
Sbjct: 546 YSAMDTVLKAREDMEEWVKSTE-EKSKKSKDSSKPNDSSINAWKPPPQGWLKCNVDGTWS 605

Query: 306 DQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAV 347
           ++  + G+GW+LRDS G  I +G ++  N  S  A E +A+
Sbjct: 606 EEHDRSGIGWVLRDSRGKVIWMGARKTKNLGSPLATEIEAL 645

[Close]

BLAST of Lcy06g023030 vs. ExPASy TrEMBL
Match: A0A6J5TTA1 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9686 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 285 HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAK 344
           HA+WK PP   +K+NVD +W+  F +GGVG  LRDS G  +  G  +   R S   +EA+
Sbjct: 291 HALWKAPPQPYVKVNVDGAWHKNFMQGGVGCCLRDSEGRML-AGLSKACLRNSAVEVEAE 350

Query: 345 AVLEGLI 352
           AVL+GL+
Sbjct: 351 AVLKGLL 356

[Close]

BLAST of Lcy06g023030 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 270 KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICV 329
           KS+ K+   ++ +  +  A WKPP   S KLN DA+W      GG+GWILRD  G  I  
Sbjct: 59  KSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 118

Query: 330 GFKRMHNRWSIKALEAKAVLEGLISI 354
             + +    +I  LE  A+ EGL +I
Sbjct: 119 DCRIIRTERNITYLEVMAICEGLRAI 144

[Close]

BLAST of Lcy06g023030 vs. ExPASy TrEMBL
Match: A0A5E4EI29 (PREDICTED: Reverse mRNAase zinc-binding domain OS=Prunus dulcis OX=3755 GN=ALMOND_2B013781 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-06
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 277 PTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRW 336
           PT      HA+WK PP   +K+NVD +W++   +GGVG  L DS G  +  G  +   R 
Sbjct: 80  PTPSASPPHALWKAPPQPYVKVNVDGAWHENSLQGGVGCCLHDSEG-RLLAGLSQACLRN 139

Query: 337 SIKALEAKAVLEGLI 352
           S   +EA+AVLEGL+
Sbjct: 140 SAVEVEAEAVLEGLL 153

[Close]

BLAST of Lcy06g023030 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-08
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 294 LSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVLEGLISI 353
           LS KLN  ASW+++  KGGV W++ DS GSSIC+  K +  +W +K LE KA++EGL + 
Sbjct: 4   LSSKLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTY 63

Query: 354 LSVAD 359
           L + +
Sbjct: 64  LLIRE 68

[Close]

BLAST of Lcy06g023030 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-08
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 280 KNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIK 339
           K L +   W+PPP     LN DASW+D   +GG+GWI+R   G  +  G + +    ++K
Sbjct: 63  KTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVK 122

Query: 340 ALEAKAVLEGLISILSVADLHP 362
            LEA A+LEGL ++ ++  L P
Sbjct: 123 LLEASAILEGLRNLTNLGVLRP 144

[Close]

BLAST of Lcy06g023030 vs. NCBI nr
Match: XP_024012275.1 (uncharacterized protein LOC112086773 [Eutrema salsugineum])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-06
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 278 TVKNLA---SHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHN 337
           TVK L+   S + W+PPPD  LK NVD + +D  R+ G+GWILRDS+G ++  G K +  
Sbjct: 134 TVKPLSASVSRSSWRPPPDGWLKCNVDGARDDNHRRSGIGWILRDSNGEALWAGTKSLPL 193

Query: 338 RWSIKALEAKAVLEGLISILSVA 358
             S+   EA+A+   ++ I +++
Sbjct: 194 LKSVIDTEAEALRWAMVCISNLS 216

[Close]

BLAST of Lcy06g023030 vs. NCBI nr
Match: CAB4267113.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-06
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 285 HAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAK 344
           HA+WK PP   +K+NVD +W+  F +GGVG  LRDS G  +  G  +   R S   +EA+
Sbjct: 291 HALWKAPPQPYVKVNVDGAWHKNFMQGGVGCCLRDSEGRML-AGLSKACLRNSAVEVEAE 350

Query: 345 AVLEGLI 352
           AVL+GL+
Sbjct: 351 AVLKGLL 356

[Close]

BLAST of Lcy06g023030 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-06
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 270 KSSGKNQPTVKNLASH--AIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICV 329
           KS+ K+   ++ +  +  A WKPP   S KLN DA+W      GG+GWILRD  G  I  
Sbjct: 59  KSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 118

Query: 330 GFKRMHNRWSIKALEAKAVLEGLISI 354
             + +    +I  LE  A+ EGL +I
Sbjct: 119 DCRIIRTERNITYLEVMAICEGLRAI 144

[Close]

BLAST of Lcy06g023030 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-07
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 281 NLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKA 340
           N +S   W+PPP   +K N DA+WN    + G+GW+LR+  G    +G + +    S+  
Sbjct: 413 NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE 472

Query: 341 LEAKAVLEGLISI 354
            E +A+   ++S+
Sbjct: 473 AELEAMRWAVLSL 485

[Close]

BLAST of Lcy06g023030 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-05
Identity = 20/59 (33.90%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 288 WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAV 347
           WK PP   +K N DA+W  +  + G+GWILR+ SG  + +G + +    ++   E +A+
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL 195

[Close]

BLAST of Lcy06g023030 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 6.6e-05
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 288 WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVL 347
           W PP    LK N DAS +++    G+GWILR+S G+ I  G  +   R + +  E   ++
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

[Close]

BLAST of Lcy06g023030 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 9.6e-04
Identity = 22/63 (34.92%), Postives = 31/63 (49.21%), Query Frame = 0


Query: 288 WKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSGSSICVGFKRMHNRWSIKALEAKAVL 347
           WK PPD  +K N DA +N Q       WI+R+  G +   G  ++ N  +    E KA+L
Sbjct: 13  WKAPPDTHIKCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKALL 72

Query: 348 EGL 351
             L
Sbjct: 73  AAL 75

[Close]

BLAST of Lcy06g023030 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 9.6e-04
Identity = 19/52 (36.54%), Postives = 28/52 (53.85%), Query Frame = 0


Query: 271 SSGKNQPTVKNLASHAIWKPPPDLSLKLNVDASWNDQFRKGGVGWILRDSSG 323
           SS   QPT+    +   W+ PP   +K N D ++N Q R    GW++RD +G
Sbjct: 173 SSRHQQPTM----ARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENG 220

The following BLAST results are available for this feature:

BLAST of Lcy06g023030 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g023030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	3.8e-08	39.02	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1J3C7A8	3.2e-07	33.66	Putative ribonuclease H protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=...	[more]
A0A6J5TTA1	1.2e-06	46.27	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS96...	[more]
A0A6J1DSV1	1.6e-06	38.37	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5E4EI29	4.6e-06	42.67	PREDICTED: Reverse mRNAase zinc-binding domain OS=Prunus dulcis OX=3755 GN=ALMON...	[more]

BLAST of Lcy06g023030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599977.1	1.2e-08	47.69	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022155262.1	7.8e-08	39.02	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_024012275.1	2.5e-06	39.76	uncharacterized protein LOC112086773 [Eutrema salsugineum]	[more]
CAB4267113.1	2.5e-06	46.27	unnamed protein product [Prunus armeniaca]	[more]
XP_022156777.1	3.3e-06	38.37	uncharacterized protein LOC111023608 [Momordica charantia]	[more]

BLAST of Lcy06g023030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	7.1e-07	31.51	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	3.0e-05	33.90	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	6.6e-05	35.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G13980.1	9.6e-04	34.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G25270.1	9.6e-04	36.54	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..172
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 299..354 e-value: 1.0E-7 score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g023030.1	Lcy06g023030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity