Lcy06g023020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g023020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr06: 47755157 .. 47757691 (+)
RNA-Seq Expression	Lcy06g023020
Synteny	Lcy06g023020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCACAATTGAGTTACGCTCATATTGGTATGTTGTCAATTCAATAAAAGAGAAAATTGAAATGCATATATGCAATTTGATACAACTTTATTATTATTTTTTTGGGAAAAAATCAATTTTGACCCCTGAACTTAGCATGTTGTATCAATTTTAACCCTAAACTTTCAATTTCATCAATTTGAACCCTAAACTTAACAAATTGTATCAATTTGAACCTCAAATTTGCATAAATGTTGCAATGTAGACCTTTAGTCAACTTTTCATTTGAATTGCTATTAAAACATGTAATTGACAATTTTCTTTTCTTTTTTTTTATTCGCATTGCACCTGAGTTAGTATTTTGTAAAAAAATTATTGGAAAAACTCTTTATCAAAAGAAATCAAATATTTCATACCATTCTTCTCATTATTATCCAAAAAAAAAAAAAAAAACACTAAGTTATTGGCAACAAGAAAAATCCAGCAAATATGAGAAATAAAAAATTCGAAATTTCTTTATTTTCGTTTCCTACATTTGTACATTATTCTAATTAGTAAGAAAAAAAAACAGTAAGAGAATAAAAATAATCACAAAAAGTTCTTAAGAAAAAACTAGCAAATATGTAAAGATAAAAAACCTCCAAAGTTTATTTGCTTTCATAATCTTAGATAGTAGCAAAAAAGCTCTCACAAAGTTCTCAACAACAAGAAAAAGTCATCTAAAATCAAGTTTCGCCAATATTTTATTTACAAGAGACTAATTCGGGTGCAATATGAATTAAGGAAAAAAAAAAGAAGAAATATTAATCAATTACGTATGGTGGTTCAAACGAAAAATTAACCAAAGGTATACATTGTAACACTTATGCAAGTTTGGGGTTAAAATCGATACGATATGATAAGTTTGAGGTTCAATTTGATGAAATTAAAAGTTCAGGGTTAAAATTGATACAACTTGGTAAGTTTAGGGTTCAATTTGATAAAATTGAAAGTTCAGGGTTAAAATTGATACAACCCCCAAAGTTTAGGGTTAAAAATGATTTTTTCCCTATTTTTTTTTAGTACATCAACATTTGGGGGTGAGGGGATTCGAATTTTTAACCTTTTAGTCGAGGGTACATGCCAATTTCCGCTGAGCTATGCTCGCTTTGGCTTGATACAATTTTATTACGTGTTAATTTGAACTTTTTAATAGATCTCACTTATGGCTTTAGAATTTGAAATGTTTCATTTTAACCATGGAACCTTGAAATTGTTTATAGAGAATCTTTAGATAGTTATTTGTTAAAATGATGTACGCAAGTTGTCGTAGTAGTTGATGTGAAAAAAATTTGATTTTATAAATGATGTCACTAATTTCTTTTTAAGTTCAAATGAAGGGTAACAATCATCATAGTCTTTTATATAGTTGAAACTTGGTTATAAAGGATTATTTTTAAGTTGAAATGAAGTGTAACAATGATTATAATCTTTTATAACTAAGTTTCAATTATATACATCTATTATGTATACCTTCTATGTTTTTATACCTTTTAAACTAACTCCTAGTATTCATGAACTTCAAGTATGAAGCACTTATGACTTTGCTTTTAATTTCACTCAAAAAGTCCTATATCAATGAAGATATTGCCCAAACGTTTGTCAAATATCTAGGCTAAGTGAGAGAGAGTCCACTCGAGCATACGACCAAAATATTATTTAAACTAATACTTTGTTATGAAGGCGAAATTTATAATTTGTCTTTCTTCATATCAAAGCTAGGTGCGAGAGAGTTAACTTGAACATAGTTCAACTAGTTAAGTTACATACTCTCGATCAAGATATCGAGGTTCGAATATTCCCACATCTTCACATTATTGAACTGGCTAGAAAAAAAAAAAGAGAAAGAGATGTGATTGAAACAGAATGATTCGGTTTTTTAAAGTTAAGCTTATAAACACTAATCTCACATATAAGTTTTTTTGCTTTGTTTTCTATCTTTTCCCATGATTTCAAACACCAAGTCAAATATTGAAAACTTAAAAAAAAAAAAAAAAAAAACAAAAAAACAAAAATGGTTAGTTTTCACAAACTTGTTTTTTTTTTTAGAATTTAGCTAAAAATTCAAATATGTCCCTAACAAAAGATGAAATCCATTGTAAGCTAAGGAAATTGAGAGAAAACAAGCATAAATTTAACAAACCAAAAATCAAATAGTGATAAAAGAGGGTTTAACCCTAACTTGTTAATTCCATTATTCAATTTTCCTGTGACTCGATATGATTTTTTTTTTTGGGGCAATGAGTTCAAGCACTATTAACACTATACTTGATGCAGCATGGACGAGGTCTCCGGCGGCGACGGGGCTAGGTGCGATCATCAGAAACACTAAGGGGAACATTATTGGAGCTTCAGCTGTAGCAAATGATATTGATTCCAAAGCTCCAATTGCCGAAGTAATGGCAATTCTCGAAGGCATTAAACTTGCAAAGATTATGAAATGCAAAGAAGTAATAGTGGAAGCTGACTGTGAACATGCAATTAATCTGGTGGCGAAAAAATCTGAGATGTGA

mRNA sequence

ATGTCTTCACAATTGAGTTACGCTCATATTGCATGGACGAGGTCTCCGGCGGCGACGGGGCTAGGTGCGATCATCAGAAACACTAAGGGGAACATTATTGGAGCTTCAGCTGTAGCAAATGATATTGATTCCAAAGCTCCAATTGCCGAAGTAATGGCAATTCTCGAAGGCATTAAACTTGCAAAGATTATGAAATGCAAAGAAGTAATAGTGGAAGCTGACTGTGAACATGCAATTAATCTGGTGGCGAAAAAATCTGAGATGTGA

Coding sequence (CDS)

ATGTCTTCACAATTGAGTTACGCTCATATTGCATGGACGAGGTCTCCGGCGGCGACGGGGCTAGGTGCGATCATCAGAAACACTAAGGGGAACATTATTGGAGCTTCAGCTGTAGCAAATGATATTGATTCCAAAGCTCCAATTGCCGAAGTAATGGCAATTCTCGAAGGCATTAAACTTGCAAAGATTATGAAATGCAAAGAAGTAATAGTGGAAGCTGACTGTGAACATGCAATTAATCTGGTGGCGAAAAAATCTGAGATGTGA

Protein sequence

MSSQLSYAHIAWTRSPAATGLGAIIRNTKGNIIGASAVANDIDSKAPIAEVMAILEGIKLAKIMKCKEVIVEADCEHAINLVAKKSEM

Homology

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BLAST of Lcy06g023020 vs. NCBI nr
Match: XP_010686140.1 (PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-04
Identity = 25/69 (36.23%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 19  TGLGAIIRNTKGNIIGASAVANDIDSKAPIAEVMAILEGIKLAKIMKCKEVIVEADCEHA 78
           +GLG + R+T+G+I+  +AV    + + PIAE  A+LEG+ +AK +  ++VI+E+DC+  
Sbjct: 186 SGLGVVCRDTEGSILSCAAVQIRANWETPIAEARAVLEGVVMAKTLGLQKVIIESDCQRV 245

Query: 79  INLVAKKSE 88
           +  + K+ +
Sbjct: 246 VQALQKQEK 254

The following BLAST results are available for this feature:

BLAST of Lcy06g023020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g023020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g023020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010686140.1	4.7e-04	36.23	PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]	[more]

BLAST of Lcy06g023020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 12..87 e-value: 1.6E-11 score: 44.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 7..88 e-value: 4.2E-8 score: 35.3
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 11..87 e-value: 1.74061E-12 score: 56.1684
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g023020.1	Lcy06g023020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity