Lcy06g022800 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g022800
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNuclear transport factor 2 (NTF2) family protein
LocationChr06: 47562859 .. 47564370 (-)
RNA-Seq ExpressionLcy06g022800
SyntenyLcy06g022800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAAACTTATCGTCGTCGCTGACTCTGAGCTCTTTGAAGATAGCAGAAAAGCCCTAATTTCAGAGCCTCAAGCTCTTCGTACTTGATCTCTCTCACCTCTCACTGTATCGCAGTTCTCAGCAGTCAAGAACCTGGTTATGCTGTAAATTCCCTCGAGCATGGCGCTCCATACATCTAATCTATGCTGCAATGTGAGTACTGCTTCTGTTAGTTGATTTTCTCATACCGTTAATATCTATTTATTTTGTTCTTCTCTTTCTACCTTTTATCATTATTGCTATTTCAAGTGCATTTGTTACTGTAATTGATTTATATGCGTTCTTCATTATAGTAAAGTGTCTCTCTGTTTAATTTTTCTTTTATAAGCTTCATCTGGAATCTGGACGTCAATTTTGAAATAATTCAGTGATATTGTGATTTTCTAGGGTTATGTTACATTCATTGGCAATCGGAAGAGTGTACGTTGTTTCCAGAGTTTTGAGGTGTTTCGTCATGTTCCTTTAGCTTTCCCTAAGAAATTTGATATTGGCCTGGTTAAAGCGTCCAGAGGGGGATATGGAAATTTCAGTAAGTTTCCTTGAAATTTTATCATTTCCAGGAGCTCTAATCAACTCCTCTATATGCTGCTTTTGAAGTTTGTTTTAGCTTTCATTACCTTTGTGAAATCTGAACTTTCGAGTCAGTACAATGTAGATATCGTATATAAAGATGGATAGACTGATATAGATATACACAGAGTTCTGTATAATTGAACTTTGGATCTTGCTCCAATTTCTTCAGTAAATCAGCATTTTGTTAATATCTAGTGCAGGGCCATGTAAACAAACTTCCAGGATGCTCTCATTCCAAACTTGCCGACTGAAAGCTGAGAACTCGAGCGGTGAAAGCGTTACACTTGATGCAAAAACTTTGGAGCAGGACCTGCAAAATGCCATTGCAGATGAAGATTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAAACTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACTGGGGATCTTGCTGCAATGCAAACTCTATGGGCACGAGGAGATAGTGTCTGCTGCGTGCACCCGGGCATGAGGGGGATATCGGGGTACGACGACGTTATGACCAGCTGGGAGTATGTATGGGCGAACTATGAGTTCCCACTGGAGATTCAACTCAAGGACGTTCAAGTTCATGCTAGAGGGGAAGTTGGCTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAGTAAAAACATTCAATTGCTCGATTAAGATTTGTCTCAGTTTGTATCGCCATTACGCTTGCAATAATTTCAATGTTTCCCACAATCGAGAGACGTGTTCCATGAAACTAGTTTAAAAGACTTGTTGGACACTTAACCTA

mRNA sequence

TCTAAACTTATCGTCGTCGCTGACTCTGAGCTCTTTGAAGATAGCAGAAAAGCCCTAATTTCAGAGCCTCAAGCTCTTCGTACTTGATCTCTCTCACCTCTCACTGTATCGCAGTTCTCAGCAGTCAAGAACCTGGTTATGCTGTAAATTCCCTCGAGCATGGCGCTCCATACATCTAATCTATGCTGCAATGGTTATGTTACATTCATTGGCAATCGGAAGAGTGTACGTTGTTTCCAGAGTTTTGAGGTGTTTCGTCATGTTCCTTTAGCTTTCCCTAAGAAATTTGATATTGGCCTGGTTAAAGCGTCCAGAGGGGGATATGGAAATTTCAGGCCATGTAAACAAACTTCCAGGATGCTCTCATTCCAAACTTGCCGACTGAAAGCTGAGAACTCGAGCGGTGAAAGCGTTACACTTGATGCAAAAACTTTGGAGCAGGACCTGCAAAATGCCATTGCAGATGAAGATTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAAACTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACTGGGGATCTTGCTGCAATGCAAACTCTATGGGCACGAGGAGATAGTGTCTGCTGCGTGCACCCGGGCATGAGGGGGATATCGGGGTACGACGACGTTATGACCAGCTGGGAGTATGTATGGGCGAACTATGAGTTCCCACTGGAGATTCAACTCAAGGACGTTCAAGTTCATGCTAGAGGGGAAGTTGGCTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAGTAAAAACATTCAATTGCTCGATTAAGATTTGTCTCAGTTTGTATCGCCATTACGCTTGCAATAATTTCAATGTTTCCCACAATCGAGAGACGTGTTCCATGAAACTAGTTTAAAAGACTTGTTGGACACTTAACCTA

Coding sequence (CDS)

ATGGCGCTCCATACATCTAATCTATGCTGCAATGGTTATGTTACATTCATTGGCAATCGGAAGAGTGTACGTTGTTTCCAGAGTTTTGAGGTGTTTCGTCATGTTCCTTTAGCTTTCCCTAAGAAATTTGATATTGGCCTGGTTAAAGCGTCCAGAGGGGGATATGGAAATTTCAGGCCATGTAAACAAACTTCCAGGATGCTCTCATTCCAAACTTGCCGACTGAAAGCTGAGAACTCGAGCGGTGAAAGCGTTACACTTGATGCAAAAACTTTGGAGCAGGACCTGCAAAATGCCATTGCAGATGAAGATTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAAACTTCAGTATTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACTGGGGATCTTGCTGCAATGCAAACTCTATGGGCACGAGGAGATAGTGTCTGCTGCGTGCACCCGGGCATGAGGGGGATATCGGGGTACGACGACGTTATGACCAGCTGGGAGTATGTATGGGCGAACTATGAGTTCCCACTGGAGATTCAACTCAAGGACGTTCAAGTTCATGCTAGAGGGGAAGTTGGCTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAG

Protein sequence

MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGYGNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDYARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHASPIDL
Homology
BLAST of Lcy06g022800 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-12
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 125 SVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 242
             + Q+  V+     ++ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Lcy06g022800 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.3e-123
Identity = 218/260 (83.85%), Postives = 233/260 (89.62%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCCNGYVTFI NRKSVRC QS EVF HVP A PK++DIGLVKAS GGY     
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ+SRMLSF+ C+LKAENSSGES+TLDA+ L+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+TSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of Lcy06g022800 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.0e-122
Identity = 215/260 (82.69%), Postives = 231/260 (88.85%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCCNGYVTFI NRK+VRC QS EVF HVP A PK++DIG VK S GGY     
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ++RMLSF+ C+LKAENSSGES+TLDA+TL+QDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
            GYD+VMTSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Lcy06g022800 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.4e-120
Identity = 214/260 (82.31%), Postives = 228/260 (87.69%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGG------ 60
           MALHT NLCCN YVTFI +RKSVRC QSF VF HVP AFPK+ +I LV +S GG      
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 61  ---------YGNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ SR LSF+ C+LKAENSSGES+TLDA+TLEQDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSKT VL ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+TSWEYVWANYEFPLEIQLKD+QVHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Lcy06g022800 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117
Identity = 212/260 (81.54%), Postives = 225/260 (86.54%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MAL TSNLCCN YVTFI N KSVRC QSF VF HVP A PK+ +I LVK+S GG      
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ SR LSF   +LKAENSSGES+TLDA+TLEQDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSKT VL ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+TSWEYVWANYEFPLEIQLKD+QVHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Lcy06g022800 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.5e-117
Identity = 212/260 (81.54%), Postives = 225/260 (86.54%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MAL TSNLCCN YVTFI N KSVRC QSF VF HVP A PK+ +I LVK+S GG      
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ SR LSF   +LKAENSSGES+TLDA+TLEQDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSKT VL ANAKFYE+FRTGDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+TSWEYVWANYEFPLEIQLKD+QVHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Lcy06g022800 vs. NCBI nr
Match: KAG6596375.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 455.3 bits (1170), Expect = 3.3e-124
Identity = 219/260 (84.23%), Postives = 235/260 (90.38%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCCNGYVTFI NRKSVRC QS EVF HVPLA PK++DIGLVKAS GGY     
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ++RMLSF+ C+LKAENSSGES+TLDA+TL+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+TSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of Lcy06g022800 vs. NCBI nr
Match: KAG7027924.1 (F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 218/260 (83.85%), Postives = 235/260 (90.38%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCC+GYVTFI NRKSVRC QS EVF HVPLA PK++DIGLVKAS GGY     
Sbjct: 8   MALHTSSLCCHGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ++RMLSF+ C+LKAENSSGES+TLDA+TL+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+TSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of Lcy06g022800 vs. NCBI nr
Match: XP_022941815.1 (uncharacterized protein LOC111447066 [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 4.8e-123
Identity = 218/260 (83.85%), Postives = 233/260 (89.62%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCCNGYVTFI NRKSVRC QS EVF HVP A PK++DIGLVKAS GGY     
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ+SRMLSF+ C+LKAENSSGES+TLDA+ L+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+TSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of Lcy06g022800 vs. NCBI nr
Match: XP_022971333.1 (uncharacterized protein LOC111470086 [Cucurbita maxima])

HSP 1 Score: 448.4 bits (1152), Expect = 4.1e-122
Identity = 215/260 (82.69%), Postives = 231/260 (88.85%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGGY----- 60
           MALHTS+LCCNGYVTFI NRK+VRC QS EVF HVP A PK++DIG VK S GGY     
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 61  ----------GNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCKQ++RMLSF+ C+LKAENSSGES+TLDA+TL+QDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
            GYD+VMTSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of Lcy06g022800 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.8 bits (1148), Expect = 1.2e-121
Identity = 216/260 (83.08%), Postives = 232/260 (89.23%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRCFQSFEVFRHVPLAFPKKFDIGLVKASRGG------ 60
           MALHTS+LCCNGYVTFI NRKSVRC QS EVF HVP A PK++DIGLVKAS GG      
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67

Query: 61  ---------YGNFRPCKQTSRMLSFQTCRLKAENSSGESVTLDAKTLEQDLQNAIADEDY 120
                     GNFRPCK ++RMLSF+ C+LKAENSSGES+TLDA+TL+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGI 180
           ARAA+IRDTLKALQEDSK SV AANAKFYE+FR GDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+TSWEYVWANYEFPLEIQLKDV+VHARG+VGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 246
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of Lcy06g022800 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 261.2 bits (666), Expect = 8.6e-70
Identity = 134/252 (53.17%), Postives = 175/252 (69.44%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTFIGNRKSVRC-FQSFEVFRHVPLAFPKKFDIGLVKASRGGYGNFR 60
           MALH S + C      + N   +   F       H+P ++P      +V AS   +G+  
Sbjct: 1   MALHGSGVFCK-----VSNMVEITSPFGGSMRLLHLPKSYP--IHCNMVSAS-NTFGSAH 60

Query: 61  PCKQTSRMLS-FQTCRLKAENSSG----ESVTLDAKTLEQDLQNAIADEDYARAAQIRDT 120
              Q     S  + CR+K E ++     ES+++D  TL+QDL+ A+ +E+Y  AA+IRD 
Sbjct: 61  LKLQNKEPCSRLRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIRDK 120

Query: 121 LKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTS 180
           LK LQED+K SVL+AN++FY++FR GDLAAMQ+LW++  + CCVHPG +GI+GYD VM S
Sbjct: 121 LKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMES 180

Query: 181 WEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVELVKTKG-SSWGGQFVTNVFERINGQW 240
           WE VW NYEFPL I+LKDV+VH RGEVGYVTC+E VKTKG SSWG QFV+NVFERI+GQW
Sbjct: 181 WELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQW 240

Query: 241 FICIHHASPIDL 246
           FICIHHASP+D+
Sbjct: 241 FICIHHASPVDI 244

BLAST of Lcy06g022800 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-61
Identity = 116/206 (56.31%), Postives = 152/206 (73.79%), Query Frame = 0

Query: 34  HVPLAFPKKFDIGLVKASRGGYGNFRPCKQTSRMLS-FQTCRLKAENSSG----ESVTLD 93
           H+P ++P      +V AS   +G+     Q     S  + CR+K E ++     ES+++D
Sbjct: 16  HLPKSYP--IHCNMVSAS-NTFGSAHLKLQNKEPCSRLRPCRVKREENNQTADVESISMD 75

Query: 94  AKTLEQDLQNAIADEDYARAAQIRDTLKALQEDSKTSVLAANAKFYEAFRTGDLAAMQTL 153
             TL+QDL+ A+ +E+Y  AA+IRD LK LQED+K SVL+AN++FY++FR GDLAAMQ+L
Sbjct: 76  ENTLKQDLETAVQEENYVEAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSL 135

Query: 154 WARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEFPLEIQLKDVQVHARGEVGYVTCVE 213
           W++  + CCVHPG +GI+GYD VM SWE VW NYEFPL I+LKDV+VH RGEVGYVTC+E
Sbjct: 136 WSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCME 195

Query: 214 LVKTKG-SSWGGQFVTNVFERINGQW 234
            VKTKG SSWG QFV+NVFERI+GQW
Sbjct: 196 FVKTKGSSSWGAQFVSNVFERIDGQW 218

BLAST of Lcy06g022800 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 125 SVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 242
             + Q+  V+     ++ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Lcy06g022800 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 125 SVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 242
             + Q+  V+     ++ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of Lcy06g022800 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 125 SVLAANAKFYEAFRTGDLAAMQTLWARGDSVCCVHPGMRGISGYDDVMTSWEYVWANYEF 184
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 185 PLEIQLKDVQVHARGEVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 242
             + Q+  V+     ++ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q93YV94.7e-1231.62F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FUV22.3e-12383.85uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470... [more]
A0A6J1I6J42.0e-12282.69uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086... [more]
A0A0A0LA112.4e-12082.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1[more]
A0A5A7TRW42.5e-11781.54F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G... [more]
A0A1S3B5S82.5e-11781.54uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=... [more]
Match NameE-valueIdentityDescription
KAG6596375.13.3e-12484.23F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7027924.11.3e-12383.85F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022941815.14.8e-12383.85uncharacterized protein LOC111447066 [Cucurbita moschata][more]
XP_022971333.14.1e-12282.69uncharacterized protein LOC111470086 [Cucurbita maxima][more]
XP_023539336.11.2e-12183.08uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G09250.18.6e-7053.17Nuclear transport factor 2 (NTF2) family protein [more]
AT3G09250.24.3e-6156.31Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.13.3e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.23.3e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.33.3e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001943UVR domainPFAMPF02151UVRcoord: 90..120
e-value: 6.4E-7
score: 28.9
IPR001943UVR domainPROSITEPS50151UVRcoord: 86..121
score: 8.391188
IPR037401SnoaL-like domainPFAMPF13474SnoaL_3coord: 126..242
e-value: 8.5E-25
score: 87.5
NoneNo IPR availableGENE3D3.10.450.50coord: 115..244
e-value: 4.6E-43
score: 148.7
NoneNo IPR availablePANTHERPTHR34957NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 56..244
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 121..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g022800.1Lcy06g022800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding