Lcy06g022160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g022160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr06: 47081595 .. 47082502 (+)
RNA-Seq Expression	Lcy06g022160
Synteny	Lcy06g022160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTAAGCTCCAAATGATAAGAAACCAAGTCCACAACCTTGCAAGCCCTTCCACTTCTCCTCCGCCATGGACACCAGCGCCACCGTGACCAATCGACCAACGCCGCCGTACCCGTCGCCGCATCGGACCGTTGATTTCTCTCCGATCGAGTTCATCCTCGGCCTCGTCGCCGTCATCACCATCCCCGCCCTCGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCCAATCTCCTCCGTCTCTGGCGGCGGAGATCCGCCAGGCTCTCCGGCGCCGCCGTCACCGTGGTGGCTGGGAATCCTACTTCTTCTAGTGACGTGGCGACGGCTGTAAAGTACAAGAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGCCGACGGCGAGGAGGTCCGGCTACTCGCCGCCTGTAAGCACTCTTTTCATGTGGATTGCATCGATATGTGGCTCTATTCTCACCCTAATTGCCCTGTTTGTCGCGCCGCCGTCGCCGTCGCCGTTAAACGGCCGATTAACAACCGTGCACCGTCGCGGTCGGCGGCTTCTAGAAACGACGATTACCAGCAAGGTCTGCCAGATGCCGGAAATTTAGTTTGAAATTCTTTCTTCTTCTTCTTCTTCCATTTCTGTATTTAGCGAGATTCCGATTGCAGCAAATTCGAACCACAGATCGAAAATTACTTCCAAATCTTGTCTCGATTTCGTGAAATTTTGTGGATAATTTCGAATTAGATAAGTCTCAATTTCCATAGAATTTTGAAATTTTGGATTTTTTTTTTCTGGGTATTGTAAATTGATTTCTGAATCTTATTTTACATTATTATTTTTTCCTTTCTCGAGGATTCAGATAACTATGCTCACTTTGATGATTACGCGTGTTATTT

mRNA sequence

ACCTAAGCTCCAAATGATAAGAAACCAAGTCCACAACCTTGCAAGCCCTTCCACTTCTCCTCCGCCATGGACACCAGCGCCACCGTGACCAATCGACCAACGCCGCCGTACCCGTCGCCGCATCGGACCGTTGATTTCTCTCCGATCGAGTTCATCCTCGGCCTCGTCGCCGTCATCACCATCCCCGCCCTCGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCCAATCTCCTCCGTCTCTGGCGGCGGAGATCCGCCAGGCTCTCCGGCGCCGCCGTCACCGTGGTGGCTGGGAATCCTACTTCTTCTAGTGACGTGGCGACGGCTGTAAAGTACAAGAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGCCGACGGCGAGGAGGTCCGGCTACTCGCCGCCTGTAAGCACTCTTTTCATGTGGATTGCATCGATATGTGGCTCTATTCTCACCCTAATTGCCCTGTTTGTCGCGCCGCCGTCGCCGTCGCCGTTAAACGGCCGATTAACAACCGTGCACCGTCGCGGTCGGCGGCTTCTAGAAACGACGATTACCAGCAAGGTCTGCCAGATGCCGGAAATTTAGTTTGAAATTCTTTCTTCTTCTTCTTCTTCCATTTCTGTATTTAGCGAGATTCCGATTGCAGCAAATTCGAACCACAGATCGAAAATTACTTCCAAATCTTGTCTCGATTTCGTGAAATTTTGTGGATAATTTCGAATTAGATAAGTCTCAATTTCCATAGAATTTTGAAATTTTGGATTTTTTTTTTCTGGGTATTGTAAATTGATTTCTGAATCTTATTTTACATTATTATTTTTTCCTTTCTCGAGGATTCAGATAACTATGCTCACTTTGATGATTACGCGTGTTATTT

Coding sequence (CDS)

ATGGACACCAGCGCCACCGTGACCAATCGACCAACGCCGCCGTACCCGTCGCCGCATCGGACCGTTGATTTCTCTCCGATCGAGTTCATCCTCGGCCTCGTCGCCGTCATCACCATCCCCGCCCTCGTCTACTCCTTCTTCTTCGCCATCAAGTGCCCGCCCAATCTCCTCCGTCTCTGGCGGCGGAGATCCGCCAGGCTCTCCGGCGCCGCCGTCACCGTGGTGGCTGGGAATCCTACTTCTTCTAGTGACGTGGCGACGGCTGTAAAGTACAAGAAGGACGAGCACTGTAAGGAAGTCGGCAACGAGTGTCCGGTGTGCCTGTCGGCGTTCGCCGACGGCGAGGAGGTCCGGCTACTCGCCGCCTGTAAGCACTCTTTTCATGTGGATTGCATCGATATGTGGCTCTATTCTCACCCTAATTGCCCTGTTTGTCGCGCCGCCGTCGCCGTCGCCGTTAAACGGCCGATTAACAACCGTGCACCGTCGCGGTCGGCGGCTTCTAGAAACGACGATTACCAGCAAGGTCTGCCAGATGCCGGAAATTTAGTTTGA

Protein sequence

MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLWRRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDAGNLV

Homology

[Close]

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-34
Identity = 78/190 (41.05%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 11  PTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLWRRRSARLSGA 70
           P PP+P+P R++D +P++ I  ++A + +PALVY+ FF   C  +       R++  S  
Sbjct: 46  PPPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDD 105

Query: 71  AVTVVAGNPTSSSDVATAV---KYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSF 130
                   P  +    T+    K+ KD H KE+GNEC VCL  F D +E+R L+ CKH+F
Sbjct: 106 TPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAF 165

Query: 131 HVDCIDMWLYSHPNCPVCRAAVAV-----AVKRPIN-----NRAPSR---SAASRNDDYQ 185
           HV CI+ WL  HPNCP+CR  V+V     A   P+N     NR+      SA SR+DD++
Sbjct: 166 HVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWR 225

[Close]

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 53  PPNLLRLWRRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFA 112
           PP + R  RRR   + G       G  TS    +  + + + + CK+ G EC +CLS   
Sbjct: 78  PPVVTRRQRRRFIFVPGQDALSNTG-LTSFELSSLPIVFFRQDSCKD-GLECSICLSELV 137

Query: 113 DGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCRAAV 150
            G++ RLL  C HSFHV+CIDMW  SH  CP+CR  V
Sbjct: 138 KGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 87  TAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCR 146
           T   YK+ +   E   +CPVCL+ F + E +RLL  C H+FH+ CID WL SH NCP+CR
Sbjct: 161 TICNYKRGDGLIE-RTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 220

Query: 147 AAVAV 152
           A +A+
Sbjct: 221 AGIAM 224

[Close]

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-13
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 3   TSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAI---------KCP 62
           T   VT+ P  P P P      S ++  + L   I + AL +  FF++            
Sbjct: 25  TVQNVTSSPLTPTPPPQPP---SALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSST 84

Query: 63  PNLLRLWRRRSARLS--GAAVTVVAGNPTS------SSDVATAVKYKKDEHCKEVGNECP 122
            ++  + R RS+R+S    + +VV   P S      S  V +   Y+  +  K+   +C 
Sbjct: 85  VDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCV 144

Query: 123 VCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRS 172
           +CLS F +GE V+++  C H FHVDC+D WL S+  CP+CR+    + K       P + 
Sbjct: 145 ICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQD 204

[Close]

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-13
Identity = 42/103 (40.78%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 81  SSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHP 140
           S S  A A K +++E   + G EC VCL+   DGEE R L  C H FH +C+DMWL SH 
Sbjct: 113 SRSTAAAAAKEEEEE--DDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS 172

Query: 141 NCPVCRAAVAVAVK--RPINNRAPSRSAASRNDDYQQGLPDAG 182
            CP+CR  V V      P+    P+    S       GL D G
Sbjct: 173 TCPLCRLTVVVPPPPLPPVPPEPPASYTVSLPASVLLGLSDHG 213

[Close]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL
Match: A0A0A0LA67 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.5e-82
Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MD +A+  NR  PPYP+PHRTVDFSPIEFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R+RS RLSGA  TVV GN T SSDVA AVKY KDEHCKEVGNECPVCLSAF DGEE+R L
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           A CKHSFHVDCIDMWLYSHPNCPVCRAAV V VKRPI+N AP R AASR+DD+ QGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 185
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL
Match: A0A6J1F238 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 151/184 (82.07%), Postives = 161/184 (87.50%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MDTSA + NR TPP+P+PHRT DFSPIEFILGL+AVI IPALVYSFFFAIKCPP LLRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           RRRSARLSGA VTVVAGN +S SDVA   KY KDE  KEVGNECPVCLSAF DGEE+R L
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
            ACKHSFHVDCIDMW YSHPNCPVCRA +A+AVKRPINNRAP R AASR+DD+ QGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 185
           GNLV
Sbjct: 184 GNLV 187

[Close]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL
Match: A0A6J1FK72 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444775 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 157/184 (85.33%), Postives = 161/184 (87.50%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MD S TV NRPTPP+PSP RTV FSPIEFIL LVAVI IPALVYSFF AIKC PNLLRLW
Sbjct: 1   MDVSTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
            RRSARLSG AVTVVA N   S+DVA AVKY KDEH KEVGNECPVCLSAF DGE+VR L
Sbjct: 61  PRRSARLSGTAVTVVAVN-RISNDVAAAVKYNKDEHGKEVGNECPVCLSAFVDGEKVRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           AACKHSFHVDCIDMWLYSHPNCPVCRA VA+AVKRPINNRAP R AASRNDDYQQGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVAIAVKRPINNRAPPRPAASRNDDYQQGLPDA 180

Query: 181 GNLV 185
           GNLV
Sbjct: 181 GNLV 183

[Close]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL
Match: A0A5D3DN65 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001760 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.3e-81
Identity = 149/184 (80.98%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MDT+A+  NR  PPYP+PHRTVDFSPIEFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R+RS RLS A VT+V GN T SSDVA AVKY KDEHCKEVG ECPVCLSAF DGEE+R L
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAV V VKRPINN AP R AASR+DD+ QGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 185
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL
Match: A0A1S3B6Q9 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.3e-81
Identity = 149/184 (80.98%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MDT+A+  NR  PPYP+PHRTVDFSPIEFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R+RS RLS A VT+V GN T SSDVA AVKY KDEHCKEVG ECPVCLSAF DGEE+R L
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAV V VKRPINN AP R AASR+DD+ QGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 185
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Lcy06g022160 vs. NCBI nr
Match: XP_038905078.1 (RING-H2 finger protein ATL33 [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 157/184 (85.33%), Postives = 163/184 (88.59%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MD SA++ NR  PP P+PHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW
Sbjct: 1   MDKSASLMNRSPPPSPTPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R RSARLSGAAVTVV  N T SSDVA AVKY KDEHCKEV NECPVCLSAF DGEE+R L
Sbjct: 61  RHRSARLSGAAVTVVVRNRTPSSDVAAAVKYNKDEHCKEVSNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           AACKHSFHVDCIDMWLYSHPNCPVCRAAV VAVKRPINN AP R A SR+DD+QQGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVPVAVKRPINNHAPRRPAVSRSDDFQQGLPDA 180

Query: 181 GNLV 185
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Lcy06g022160 vs. NCBI nr
Match: KAE8651013.1 (hypothetical protein Csa_001104 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MD +A+  NR  PPYP+PHRTVDFSPIEFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 42  MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 101

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R+RS RLSGA  TVV GN T SSDVA AVKY KDEHCKEVGNECPVCLSAF DGEE+R L
Sbjct: 102 RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 161

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           A CKHSFHVDCIDMWLYSHPNCPVCRAAV V VKRPI+N AP R AASR+DD+ QGLPDA
Sbjct: 162 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 221

Query: 181 GNLV 185
           G LV
Sbjct: 222 GYLV 225

[Close]

BLAST of Lcy06g022160 vs. NCBI nr
Match: XP_004137943.1 (RING-H2 finger protein ATL33 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MD +A+  NR  PPYP+PHRTVDFSPIEFILGLVAVITIPALVYSF FAIKCPPN LRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           R+RS RLSGA  TVV GN T SSDVA AVKY KDEHCKEVGNECPVCLSAF DGEE+R L
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           A CKHSFHVDCIDMWLYSHPNCPVCRAAV V VKRPI+N AP R AASR+DD+ QGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GNLV 185
           G LV
Sbjct: 181 GYLV 184

[Close]

BLAST of Lcy06g022160 vs. NCBI nr
Match: XP_023540894.1 (RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.4 bits (799), Expect = 2.6e-81
Identity = 156/184 (84.78%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MDTS TV NRPTPP+PSP RTV FSPIEFIL LVAVI IPALVYSFF AIKC PNLLRLW
Sbjct: 1   MDTSTTVMNRPTPPFPSPRRTVAFSPIEFILALVAVIIIPALVYSFFIAIKCSPNLLRLW 60

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
            RRSARL GAAVTVVA N   S+DVA AV Y KD+HCKEVGNECPVCLSAFADGE+VR L
Sbjct: 61  PRRSARLPGAAVTVVAVN-RISNDVAAAVVYNKDQHCKEVGNECPVCLSAFADGEKVRQL 120

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
           AACKHSFHVDCIDMWLYSHPNCPVCRA V +AVKRPINNRAP R AASRN+DYQQGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRATVTIAVKRPINNRAPPRPAASRNNDYQQGLPDA 180

Query: 181 GNLV 185
           GNLV
Sbjct: 181 GNLV 183

[Close]

BLAST of Lcy06g022160 vs. NCBI nr
Match: XP_022934546.1 (RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017306.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 151/184 (82.07%), Postives = 161/184 (87.50%), Query Frame = 0


Query: 1   MDTSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60
           MDTSA + NR TPP+P+PHRT DFSPIEFILGL+AVI IPALVYSFFFAIKCPP LLRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLL 120
           RRRSARLSGA VTVVAGN +S SDVA   KY KDE  KEVGNECPVCLSAF DGEE+R L
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRSAASRNDDYQQGLPDA 180
            ACKHSFHVDCIDMW YSHPNCPVCRA +A+AVKRPINNRAP R AASR+DD+ QGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GNLV 185
           GNLV
Sbjct: 184 GNLV 187

[Close]

BLAST of Lcy06g022160 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-35
Identity = 78/190 (41.05%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 11  PTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLWRRRSARLSGA 70
           P PP+P+P R++D +P++ I  ++A + +PALVY+ FF   C  +       R++  S  
Sbjct: 46  PPPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDD 105

Query: 71  AVTVVAGNPTSSSDVATAV---KYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSF 130
                   P  +    T+    K+ KD H KE+GNEC VCL  F D +E+R L+ CKH+F
Sbjct: 106 TPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAF 165

Query: 131 HVDCIDMWLYSHPNCPVCRAAVAV-----AVKRPIN-----NRAPSR---SAASRNDDYQ 185
           HV CI+ WL  HPNCP+CR  V+V     A   P+N     NR+      SA SR+DD++
Sbjct: 166 HVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWR 225

[Close]

BLAST of Lcy06g022160 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15
Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = 0


Query: 30  ILGLVAVITIPALVYSFFFAIKCPPNLLRLWRRRSAR---LSGAA----------VTVVA 89
           I+  + ++T+  L + F++  +      R W    AR     G A          +  + 
Sbjct: 132 IITTLFLLTLLVLCFKFYYRRRRSITTSRRWSMEEARNWDFDGPAPVIVDHPIWHIRTIG 191

Query: 90  GNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSFHVDCIDMWL 149
            NPT  S +      KKD   +  G +C VCLS F + E +RLL  CKH+FH+ CID WL
Sbjct: 192 LNPTVISSIKVCQYSKKDGVVE--GTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWL 251

Query: 150 YSHPNCPVCRAAVAVA 153
            SH NCP+CRA +  A
Sbjct: 252 RSHTNCPLCRAPIVEA 265

[Close]

BLAST of Lcy06g022160 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-15
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 53  PPNLLRLWRRRSARLSGAAVTVVAGNPTSSSDVATAVKYKKDEHCKEVGNECPVCLSAFA 112
           PP + R  RRR   + G       G  TS    +  + + + + CK+ G EC +CLS   
Sbjct: 78  PPVVTRRQRRRFIFVPGQDALSNTG-LTSFELSSLPIVFFRQDSCKD-GLECSICLSELV 137

Query: 113 DGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCRAAV 150
            G++ RLL  C HSFHV+CIDMW  SH  CP+CR  V
Sbjct: 138 KGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of Lcy06g022160 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 87  TAVKYKKDEHCKEVGNECPVCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCR 146
           T   YK+ +   E   +CPVCL+ F + E +RLL  C H+FH+ CID WL SH NCP+CR
Sbjct: 161 TICNYKRGDGLIE-RTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 220

Query: 147 AAVAV 152
           A +A+
Sbjct: 221 AGIAM 224

[Close]

BLAST of Lcy06g022160 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 3   TSATVTNRPTPPYPSPHRTVDFSPIEFILGLVAVITIPALVYSFFFAI---------KCP 62
           T   VT+ P  P P P      S ++  + L   I + AL +  FF++            
Sbjct: 25  TVQNVTSSPLTPTPPPQPP---SALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSST 84

Query: 63  PNLLRLWRRRSARLS--GAAVTVVAGNPTS------SSDVATAVKYKKDEHCKEVGNECP 122
            ++  + R RS+R+S    + +VV   P S      S  V +   Y+  +  K+   +C 
Sbjct: 85  VDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCV 144

Query: 123 VCLSAFADGEEVRLLAACKHSFHVDCIDMWLYSHPNCPVCRAAVAVAVKRPINNRAPSRS 172
           +CLS F +GE V+++  C H FHVDC+D WL S+  CP+CR+    + K       P + 
Sbjct: 145 ICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPDQD 204

The following BLAST results are available for this feature:

BLAST of Lcy06g022160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80927	3.3e-34	41.05	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q9XF63	1.1e-13	41.24	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q8LFY8	3.2e-13	49.23	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9SJJ7	3.2e-13	29.03	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9LRB7	5.4e-13	40.78	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]

BLAST of Lcy06g022160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA67	7.5e-82	82.07	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE...	[more]
A0A6J1F238	1.7e-81	82.07	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690...	[more]
A0A6J1FK72	1.7e-81	85.33	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111444775...	[more]
A0A5D3DN65	8.3e-81	80.98	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B6Q9	8.3e-81	80.98	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 ...	[more]

BLAST of Lcy06g022160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905078.1	1.6e-83	85.33	RING-H2 finger protein ATL33 [Benincasa hispida]	[more]
KAE8651013.1	1.5e-81	82.07	hypothetical protein Csa_001104 [Cucumis sativus]	[more]
XP_004137943.1	1.5e-81	82.07	RING-H2 finger protein ATL33 [Cucumis sativus]	[more]
XP_023540894.1	2.6e-81	84.78	RING-H2 finger protein ATL33-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934546.1	3.4e-81	82.07	RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 fin...	[more]

BLAST of Lcy06g022160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37580.1	2.3e-35	41.05	RING/U-box superfamily protein	[more]
AT4G33565.1	2.0e-15	34.56	RING/U-box superfamily protein	[more]
AT1G72310.1	7.8e-15	41.24	RING/U-box superfamily protein	[more]
AT1G72220.1	2.3e-14	49.23	RING/U-box superfamily protein	[more]
AT2G27940.1	2.3e-14	29.03	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 104..145 e-value: 1.6E-6 score: 37.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..146 e-value: 4.3E-14 score: 52.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 104..146 score: 12.415513
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 73..151 e-value: 1.7E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..184
None	No IPR available	PANTHER	PTHR45676:SF88	RING-H2 FINGER PROTEIN ATL33	coord: 8..184
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 103..146 e-value: 7.82852E-17 score: 68.4907
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..152
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 8..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g022160.1	Lcy06g022160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane