Lcy06g022070 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g022070
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine-rich RNA-binding protein
Location	Chr06: 46987475 .. 46989882 (-)
RNA-Seq Expression	Lcy06g022070
Synteny	Lcy06g022070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTTAGTAATTTAAAATTCTTTATAAAGCCTTCAATTCAACGCAAATTTATAAATGTCGAATGTATTATAAACATCTAACATAATGATCATAATGCATTTGTAAGAAGGTTCAGAAGAATTTTAAGAAATATAATATAATATAATAAATCGAAAATTATAGGAATTAAAATAAGATTTAAATAGTTTCTAAAAAGAAAAAGAAAAAGACTTAAATATTGGTGAACGAAGGACAAAACTCACCCGCCACTCGGTGGAACTTCTGAACTCGGAGGTTTTGCGGCCATTGGAAGGGTTTTGTGAAGTCTTTTGGCTGCTCTTCTCTTTCCGCTTCCAATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTACGCTCAATTCTCGATTAATGTTATTTCTCCTTGTATCCGTGCTTGCTTAGATTGGATTCCGGTAACCATTTCTAAGAATTTTTCACGAGTATTCATCTTCTTTACTGCCGGTTTTCCGCCTGTATCGGAATCGAGGAAGCAAAATTACTCTCCCTTTGATTGAACGCTATTTTATGTTGCTCCTAGTTCGGTTCCTTTCTATTAGTTTTTGAAAATGATTTGATGAAGTAAACATGATGTATGAGGATGCGAATGAGAGCTTGGATGATTTAGAGCTGTGTTTATAATGGTGATTCTGTCAATCTTATATCTCTTTCTTTCCTATTGTTTTTTCGAAAACCGAATTTGTTTCCATGATTTCTGGATGTTTTTAATTCTGATGCAGTTGCTTTTTCTGTTTTCTAATTCAAACTTTGGAAGATGTTCTTTCCTGTAATTTTTTGCCCAATAAGTTATCGAATATTATTTTTCATTCGAGTATCATGGATGGATATGTATGCATTTTAAATCTAGTAAGGTAGAAGAAAAAAACTTACCGGTTTTTCTGACGAACCCGTATACGTATTCTCGTTGTTGAGCGCCACTGATTGTTGTCTTAGTTAAGAATCAAGATCTTGAATGTAGATTGCGGGCCATCTGAATTAATTAAATATGATTGACATTTTCATTAGTCCAGTGGAAGTTAGGTATCTAGGAAAGAATTGTTGCGTTTTTCAAAAAAAAAAAAAAAAAGGAAAGAGTTGTTGTGCTCATTAGTTATCTCTTGATTGACGAGTTATATTTTCAAGTGCTCACGCATGTCCCTATGCCTTTTTTGTTTTGGCCGATCTCGTAAAGTTTCTGTGAGCCATTGCTTAGCTGAACAGTTGAATTGACAGGATAGTTAATTAAAGAATTTCAGTCCCTTTAAAGGCGATAGGTGAGTGTTATACAAAACTCAGAAGATCTCCAATGTTACCTACTATTTTAACAATGGTTAGCTGATTGTGAACTGGGTTTTCTTATAGATTCTCACAAAAACTCATATTGATACTGGTAACAAGTAACAACAATCGGGGGAATTCTATAACTGACATTATGAGATTTTTAGAGATGCAAAGATGACCGTTAATCAATTATTGAGCTATAGAATGTCTTGATATTTACTCTGTTTGTGTAATAAATATCAGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGGTGAACAACAACCTTCCTTCACTTCTGTGTTTTCATTTCCTTGAACATAGCCTTCCAAAGATTAGAGAATCATACTGACTCAAATTGACTTGGCTTGATGATGACCCTCCAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAATTATTGTTTGGCATTCTAGCATAGATTTTGTATCTCCACATTTACTCATCCAATTATTCTAGATGGATTCAAGAGCTTGGATAGATGAAGAACAGGGTTTTCAATCCAACCAGGAAATAGCCTCATCATTTTTGTTCTCTGAGGATTTTCTCATATTTATATGCTAAACCTGAATTAAACTTTGATTTCTTTTTTTTCATTGTTTTCTTTTCTTTTGAATTCCTTTTCTCTTGTTCTTCTTTAGGCTTGTTTTACCATTCTATTCTATACTGTTTTCTTATGCTCTGTATTTTGTTGGTCTTATTTACTTATAGTCTATTTGTCTCGCAACCTATTATTGAAATTTTCATTTACCATTTCAA

mRNA sequence

CTTGTTAGTAATTTAAAATTCTTTATAAAGCCTTCAATTCAACGCAAATTTATAAATGTCGAATGTATTATAAACATCTAACATAATGATCATAATGCATTTGTAAGAAGGTTCAGAAGAATTTTAAGAAATATAATATAATATAATAAATCGAAAATTATAGGAATTAAAATAAGATTTAAATAGTTTCTAAAAAGAAAAAGAAAAAGACTTAAATATTGGTGAACGAAGGACAAAACTCACCCGCCACTCGGTGGAACTTCTGAACTCGGAGGTTTTGCGGCCATTGGAAGGGTTTTGTGAAGTCTTTTGGCTGCTCTTCTCTTTCCGCTTCCAATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAATTATTGTTTGGCATTCTAGCATAGATTTTGTATCTCCACATTTACTCATCCAATTATTCTAGATGGATTCAAGAGCTTGGATAGATGAAGAACAGGGTTTTCAATCCAACCAGGAAATAGCCTCATCATTTTTGTTCTCTGAGGATTTTCTCATATTTATATGCTAAACCTGAATTAAACTTTGATTTCTTTTTTTTCATTGTTTTCTTTTCTTTTGAATTCCTTTTCTCTTGTTCTTCTTTAGGCTTGTTTTACCATTCTATTCTATACTGTTTTCTTATGCTCTGTATTTTGTTGGTCTTATTTACTTATAGTCTATTTGTCTCGCAACCTATTATTGAAATTTTCATTTACCATTTCAA

Coding sequence (CDS)

ATGGCTTTCGCTTCTGCCTTTCGACGAGTTCTCACTGGATCTTCCCTCACTTCGTCTTCTCTTCACCAATTGACTTCGTTTCGTTTCAATTCCACTCTCACAGCGCCGAAACTCTTCGTCAGTGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAACTTGTTGAAGCAAAAGTTATTACAGATCGAGCCTCTGGACGATCGAAGGGCTTCGGTTTTGTTACTTACGCAACCATAGAGGAAGCAGAGAAGGCCAGAGAAGAAATGAACGCCAAATTCCTGGATGGATGGGTTATTTTTGTTGACCCTGCCAAACCAAGGGAGCCTAGACCGCCTCCGCAGCCACAGCCCGAGTCGACAGAAGGTTTCAGAACAAATAAGACAATCGGTTGGTGTGGTTAA

Protein sequence

MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQPESTEGFRTNKTIGWCG

Homology

[Close]

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-22
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 38  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEM 97
           LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M
Sbjct: 58  LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117

Query: 98  NAKFLDGWVIFVDPAKPREPRPPPQPQ 125
           + KFLDGWVIF + A+PRE     QPQ
Sbjct: 118 DGKFLDGWVIFAEYARPREQSQSYQPQ 144

[Close]

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.6e-18
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 35  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAR 94
           A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA 
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 95  EEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP 124
            E N + L+G  IFVD AK ++           R PP P
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 5   SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQL 64
           SA RR   G  L SS L   +S    S+ + P  KL+VSGLS  TT+D L++ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 65  VEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDP---------AK 124
           +   ++ D+ + R KGF F+ Y T EEA KA + M+ KFLDG VIFV+          AK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

Query: 125 PREPRPPPQPQPESTEGFRT 134
           PR   P PQ +P +   FRT
Sbjct: 164 PRRDFPKPQSKPRT---FRT 180

[Close]

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-16
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 37  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE 96
           +LFV+GLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y T E    A + 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 97  MNAKFLDGWVIFVDPAKPR 116
           MN + ++GW+I VD AK R
Sbjct: 360 MNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-16
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 37  KLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREE 96
           +LFV+GLS  T++  L+ AF PFG+LVE K+I D+ S RSKG+ F+ Y T E    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 97  MNAKFLDGWVIFVDPAK--PREPRPPPQPQPESTEGFRTNKTIG 139
           MN + ++GW+I VD AK   R+ +PP      S +  R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL
Match: A0A6J1CX06 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111014997 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 129/145 (88.97%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAF 60
           MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAF
Sbjct: 1   MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAF 60

Query: 61  SPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKAREEMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQPESTEGFRTNKTIGWCG 142
           PRPPPQP  E TEGFRTNKTIGWCG
Sbjct: 121 PRPPPQPNHEPTEGFRTNKTIGWCG 145

[Close]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL
Match: D7TQ88 (RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.8e-58
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFG 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFG
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFG 60

Query: 61  QLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPP 120
           QL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAKFLDGWVIFVDPAKPREPRPP
Sbjct: 61  QLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 120

Query: 121 PQPQPESTE-GFRTNKTIGWCG 142
           PQ +PES+E GFRTNKTIGWCG
Sbjct: 121 PQQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL
Match: A0A1U8AE68 (glycine-rich RNA-binding protein 6, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104599304 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.9e-57
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPF 60
           MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+SGLSRLTTD+KLKEAFSPF
Sbjct: 1   MAFVSAFRRALSGSSTPSSLLQWRLASIRLNSTLTTPKLFISGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRP 120
           G L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GHLLEAKVIADRVSGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQPESTE-GFRTNKTIGWCG 142
           PPQP+PE +E GFRTNKT+GWCG
Sbjct: 121 PPQPEPEPSETGFRTNKTVGWCG 143

[Close]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL
Match: A0A5B7BY51 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_041424 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.9e-57
Identity = 117/143 (81.82%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPF 60
           MAFAS+FRR L GSS+ SS LH Q  S R NSTL+ PKLFVSGLSRLTTD+KLKE FS F
Sbjct: 1   MAFASSFRRFLNGSSVRSSILHSQFASIRLNSTLSTPKLFVSGLSRLTTDEKLKEVFSSF 60

Query: 61  GQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRP 120
           GQL+EAKVI DRASGRSKGFGFVTYATIE+AEKARE MNAK+LDGWVIFVDPAKPREPRP
Sbjct: 61  GQLLEAKVIVDRASGRSKGFGFVTYATIEDAEKAREGMNAKYLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQPESTE-GFRTNKTIGWCG 142
           PPQP+P+ +E GFRTNKTIGWCG
Sbjct: 121 PPQPEPQPSETGFRTNKTIGWCG 143

[Close]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL
Match: A0A5B7A8G9 (RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022501 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 115/143 (80.42%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPF 60
           MAFASAFRR+L GSS  SS +H Q  S R +STLT PKLFVSGLSRLTTD+KLKEAFSPF
Sbjct: 1   MAFASAFRRLLNGSSTPSSIIHSQFASIRLSSTLTTPKLFVSGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRP 120
           GQL+EAKVI DRASGRSKGFGFVTYATI++A KA+E MNAK+LDGWVIFVDPAKPREPRP
Sbjct: 61  GQLLEAKVIVDRASGRSKGFGFVTYATIDDAGKAQEGMNAKYLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQPESTE-GFRTNKTIGWCG 142
           PPQP+P+ +E GFRTNKT+GWCG
Sbjct: 121 PPQPEPQPSETGFRTNKTVGWCG 143

[Close]

BLAST of Lcy06g022070 vs. NCBI nr
Match: XP_022145577.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia])

HSP 1 Score: 251.1 bits (640), Expect = 5.5e-63
Identity = 129/145 (88.97%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH----QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAF 60
           MAFASAFRRVL GSS  SSSL     Q T+ RF STLTAPKLFVSGLSRLTTDDKLKEAF
Sbjct: 1   MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSGLSRLTTDDKLKEAF 60

Query: 61  SPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SPFGQLVEAKVITDRASGRSKGFGFVTYA+IEEAEKAREEMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQPESTEGFRTNKTIGWCG 142
           PRPPPQP  E TEGFRTNKTIGWCG
Sbjct: 121 PRPPPQPNHEPTEGFRTNKTIGWCG 145

[Close]

BLAST of Lcy06g022070 vs. NCBI nr
Match: XP_034692789.1 (organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFG 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFG
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPVRFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFG 60

Query: 61  QLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPP 120
           QL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAKFLDGWVIFVDPAKPREPRPP
Sbjct: 61  QLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 120

Query: 121 PQPQPESTE-GFRTNKTIGWCG 142
           PQ +PES+E GFRTNKTIGWCG
Sbjct: 121 PQQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Lcy06g022070 vs. NCBI nr
Match: XP_002274178.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis vinifera] >CBI32608.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPFG 60
           MAFAS+FRRVLTGSS    S  Q +  RFNST+T+PKLFVSGLSRLTTD+KLKEAFSPFG
Sbjct: 1   MAFASSFRRVLTGSSTILQS--QFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFG 60

Query: 61  QLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPP 120
           QL+EAKVITDR SGRSKGFGFVTY T+EEAEKARE MNAKFLDGWVIFVDPAKPREPRPP
Sbjct: 61  QLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPP 120

Query: 121 PQPQPESTE-GFRTNKTIGWCG 142
           PQ +PES+E GFRTNKTIGWCG
Sbjct: 121 PQQEPESSETGFRTNKTIGWCG 140

[Close]

BLAST of Lcy06g022070 vs. NCBI nr
Match: XP_010260092.1 (PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera] >DAD27859.1 TPA_asm: hypothetical protein HUJ06_029327 [Nelumbo nucifera])

HSP 1 Score: 231.1 bits (588), Expect = 5.9e-57
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPF 60
           MAF SAFRR L+GSS  SS L  +L S R NSTLT PKLF+SGLSRLTTD+KLKEAFSPF
Sbjct: 1   MAFVSAFRRALSGSSTPSSLLQWRLASIRLNSTLTTPKLFISGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRP 120
           G L+EAKVI DR SGRSKGFGFVTYATIE+AEKARE MNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GHLLEAKVIADRVSGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQPESTE-GFRTNKTIGWCG 142
           PPQP+PE +E GFRTNKT+GWCG
Sbjct: 121 PPQPEPEPSETGFRTNKTVGWCG 143

[Close]

BLAST of Lcy06g022070 vs. NCBI nr
Match: XP_041025917.1 (organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x Juglans regia])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSSLTSSSLH-QLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSPF 60
           MAF S+ RR+L+GSS  SS LH Q TS R N+TLT+PKLF+SGLSRLTTD+KLKEAFSPF
Sbjct: 1   MAFVSSIRRLLSGSSTASSILHSQYTSIRLNTTLTSPKLFISGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRP 120
           GQL++AKVI DRA+GRSKGFGFVTYA+IEEAEKARE MNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLLDAKVIADRATGRSKGFGFVTYASIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPQPQPESTE-GFRTNKTIGWCG 142
           PPQP  ES++ GFRTNKT+GWCG
Sbjct: 121 PPQPLQESSDMGFRTNKTVGWCG 143

[Close]

BLAST of Lcy06g022070 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-48
Identity = 102/145 (70.34%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MAFASAFRRVLTGSS--LTSSSLHQLTSFRFNSTLTAPKLFVSGLSRLTTDDKLKEAFSP 60
           MAF S+FRR++ GSS  L+S SL      R  STLT+P+LFVSGLSRLTT++KL++AF+ 
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPSL----CVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFAS 60

Query: 61  FGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDPAKPREPR 120
           FGQLV+A+VITDR SGRSKGFGFVTYATIE+AEKA+ EMNAKFLDGWVIFVDPA+PREPR
Sbjct: 61  FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPR 120

Query: 121 PPPQPQ---PESTEGFRTNKTIGWC 141
            P Q +   P S  GF TNKTIGWC
Sbjct: 121 RPLQQEPLRPSSESGFTTNKTIGWC 141

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BLAST of Lcy06g022070 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-23
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 38  LFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAREEM 97
           LFVSGLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YAT+E++ K    M
Sbjct: 58  LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117

Query: 98  NAKFLDGWVIFVDPAKPREPRPPPQPQ 125
           + KFLDGWVIF + A+PRE     QPQ
Sbjct: 118 DGKFLDGWVIFAEYARPREQSQSYQPQ 144

[Close]

BLAST of Lcy06g022070 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-19
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 35  APKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEEAEKAR 94
           A KLF+ GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+A+ +EA+KA 
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 95  EEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP 124
            E N + L+G  IFVD AK ++           R PP P
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Lcy06g022070 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 0


Query: 5   SAFRRVLTGSSLTSSSLHQLTSFRFNSTLTAP--KLFVSGLSRLTTDDKLKEAFSPFGQL 64
           SA RR   G  L SS L   +S    S+ + P  KL+VSGLS  TT+D L++ F  FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 65  VEAKVITDRASGRSKGFGFVTYATIEEAEKAREEMNAKFLDGWVIFVDP---------AK 124
           +   ++ D+ + R KGF F+ Y T EEA KA + M+ KFLDG VIFV+          AK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

Query: 125 PREPRPPPQPQPESTEGFRT 134
           PR   P PQ +P +   FRT
Sbjct: 164 PRRDFPKPQSKPRT---FRT 180

[Close]

BLAST of Lcy06g022070 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-17
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 30  NSTLTAPKLFVSGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYATIEE 89
           N +LT  K+FV GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY +IE 
Sbjct: 30  NLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEV 89

Query: 90  AEKAREEMNAKFLDGWVIFVDPA 113
           A  A + M  K LDG +I V PA
Sbjct: 90  ANNAMQAMQNKELDGRIIGVHPA 112

The following BLAST results are available for this feature:

BLAST of Lcy06g022070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	3.8e-22	58.62	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	9.6e-18	50.51	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FX45	4.8e-17	43.57	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	6.9e-16	51.90	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	9.0e-16	42.31	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Lcy06g022070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX06	2.7e-63	88.97	organelle RRM domain-containing protein 2, mitochondrial-like OS=Momordica chara...	[more]
D7TQ88	9.8e-58	83.80	RRM domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_08s0040g03330 PE...	[more]
A0A1U8AE68	2.9e-57	81.82	glycine-rich RNA-binding protein 6, mitochondrial OS=Nelumbo nucifera OX=4432 GN...	[more]
A0A5B7BY51	4.9e-57	81.82	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_041424 PE=4...	[more]
A0A5B7A8G9	1.1e-56	80.42	RRM domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022501 PE=4...	[more]

BLAST of Lcy06g022070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145577.1	5.5e-63	88.97	organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charant...	[more]
XP_034692789.1	1.6e-57	83.80	organelle RRM domain-containing protein 2, mitochondrial [Vitis riparia]	[more]
XP_002274178.1	2.0e-57	83.80	PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial isoform X1 [Vitis v...	[more]
XP_010260092.1	5.9e-57	81.82	PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Nelumbo nucifera] ...	[more]
XP_041025917.1	2.2e-56	80.42	organelle RRM domain-containing protein 2, mitochondrial [Juglans microcarpa x J...	[more]

BLAST of Lcy06g022070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	1.8e-48	70.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	2.7e-23	58.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	6.8e-19	50.51	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	3.4e-18	43.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	6.4e-17	54.22	glycine-rich RNA-binding protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 7.3E-27 score: 105.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..104 e-value: 2.8E-21 score: 75.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 18.54678
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..137 e-value: 3.1E-28 score: 100.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..141
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 1..141
None	No IPR available	PANTHER	PTHR48029:SF3	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g022070.1	Lcy06g022070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding