Lcy06g022040 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g022040
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Histone H2B
Location	Chr06: 46974005 .. 46974864 (+)
RNA-Seq Expression	Lcy06g022040
Synteny	Lcy06g022040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTCACCCACTCGTCTTCAACCCGCACGAGCCCTTTCATCTTAATTCCTGTAATTCCTCTTTACTTCAACAATGGCGCCAACGAAAGGTGAAAAGAAGCCCGCGGAGAAGAAGCCTGCCGAGAAGGCCCCCGCCTCGGCCGAGAAGAAGCCAAAGGCCGAGAAAAAGATCGCAAAGGACAGCGGCGACAAGAAGAAGAAGAAGATCAAGAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTCGAGAAACTTGCGCAAGAGGCTTCCAAATTGGCGAGATATAACAAGAAACCGACGATCACCTCTCGGGAGATCCAGACCGCCGTGCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCACGCCGTATCCGAAGGAACGAAGGCGGTGACCAAATTTACGAGCTCTTAGGTTACCGAAATCGGTGAATTTTGGAATTAGGTTTACGTTTGCAGTTATGATGATAATTTGTTGTGTAGATCCTGGTTTCTCTGGTCATAGGTGTATCGAGCCAATAGTTTTTAATGAATAACAAGTACTTTCTTCAGTAGATTCCTTTTCTTTTGGTGCAAATGTAGGTGAAACTCTAGTCTCTGTTTGAGAAACAAATGCCTGACGGAGGGGGAAAAAACATTAGGGTTTCTGTAGATTTGATATTTCTTAGATTCTGGATGTTTTCTTCCCGCTTGTTTTCCATTTCACTTTAATCATGAACTCCGAATCATTTAAGTTGTTGATCGTTTATCTGAGAAAACTCAAGATTTCTCATTGATTGAAC

mRNA sequence

CAATTCACCCACTCGTCTTCAACCCGCACGAGCCCTTTCATCTTAATTCCTGTAATTCCTCTTTACTTCAACAATGGCGCCAACGAAAGGTGAAAAGAAGCCCGCGGAGAAGAAGCCTGCCGAGAAGGCCCCCGCCTCGGCCGAGAAGAAGCCAAAGGCCGAGAAAAAGATCGCAAAGGACAGCGGCGACAAGAAGAAGAAGAAGATCAAGAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTCGAGAAACTTGCGCAAGAGGCTTCCAAATTGGCGAGATATAACAAGAAACCGACGATCACCTCTCGGGAGATCCAGACCGCCGTGCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCACGCCGTATCCGAAGGAACGAAGGCGGTGACCAAATTTACGAGCTCTTAGGTTACCGAAATCGGTGAATTTTGGAATTAGGTTTACGTTTGCAGTTATGATGATAATTTGTTGTGTAGATCCTGGTTTCTCTGGTCATAGGTGTATCGAGCCAATAGTTTTTAATGAATAACAAGTACTTTCTTCAGTAGATTCCTTTTCTTTTGGTGCAAATGTAGGTGAAACTCTAGTCTCTGTTTGAGAAACAAATGCCTGACGGAGGGGGAAAAAACATTAGGGTTTCTGTAGATTTGATATTTCTTAGATTCTGGATGTTTTCTTCCCGCTTGTTTTCCATTTCACTTTAATCATGAACTCCGAATCATTTAAGTTGTTGATCGTTTATCTGAGAAAACTCAAGATTTCTCATTGATTGAAC

Coding sequence (CDS)

ATGGCGCCAACGAAAGGTGAAAAGAAGCCCGCGGAGAAGAAGCCTGCCGAGAAGGCCCCCGCCTCGGCCGAGAAGAAGCCAAAGGCCGAGAAAAAGATCGCAAAGGACAGCGGCGACAAGAAGAAGAAGAAGATCAAGAAGAGCACCGAGACTTACAAGATCTATATCTTCAAGGTCTTGAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGCATTATGAACAGTTTCATCAACGATATCTTCGAGAAACTTGCGCAAGAGGCTTCCAAATTGGCGAGATATAACAAGAAACCGACGATCACCTCTCGGGAGATCCAGACCGCCGTGCGATTGGTGTTGCCTGGCGAGTTAGCGAAGCACGCCGTATCCGAAGGAACGAAGGCGGTGACCAAATTTACGAGCTCTTAG

Protein sequence

MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-56
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKD-SGDKKKKKIKKSTETYKIYIFKV 60
           M PTK EKKPAEKKPAEKAP  AEKKPKAEKKI+K+ S DKKKK+ KKS ETYKIYIFKV
Sbjct: 1   MPPTKAEKKPAEKKPAEKAP--AEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-54
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSG--DKKKKKIKKSTETYKIYIFK 60
           MAP   EKKPAEKKPA KAP  AEK PKAEKKI+KD+G  +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot
Match: Q9SI96 (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-53
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPAS---------AEKKPKAEKKIAKDS----GDKKKKKIKK 60
           MAP  G KKPAEKKPAEKAPA          AEKKPKA KK+ K++     +KKKK++KK
Sbjct: 1   MAPKAG-KKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120
           STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot
Match: Q9LFF6 (Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-53
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSG-DKKKKKIKKSTETYKIYIFKV 60
           MAP   EKKPA KKPAEKAP  AEK PKAEKKI K+ G +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

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BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-53
Identity = 124/148 (83.78%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEK-----APASAEKKPKAEKKIAKD----SGDKKKKKIKKSTET 60
           MAP K EKKPAEKKPAE+       A AEKKPKA KK+ K+    +GDKKKK++KKS ET
Sbjct: 1   MAP-KAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL
Match: A0A5D3DN75 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL
Match: A0A1S3B6N1 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL
Match: A0A6J1KUE6 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.2e-61
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL
Match: A0A6J1H1K6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.2e-61
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL
Match: A0A6J1IZM1 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.9e-60
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK PAS+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. NCBI nr
Match: XP_038903506.1 (probable histone H2B.3 [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEKAP+SAEKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKAPSSAEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. NCBI nr
Match: XP_008442575.1 (PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like [Cucumis melo var. makuwa] >TYK25065.1 histone H2B-like [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P+SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPSSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. NCBI nr
Match: XP_022958236.1 (probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B.3 [Cucurbita maxima] >XP_023538865.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6596423.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027965.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 8.7e-61
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK P SAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPTSAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. NCBI nr
Match: XP_022935032.1 (probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B.3 [Cucurbita maxima] >XP_023527987.1 probable histone H2B.3 [Cucurbita pepo subsp. pepo] >KAG6580565.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017318.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 133/139 (95.68%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKVL 60
           MAPTK EKKPAEKKPAEK PAS+EKK KAEKKIAKD GDKKKKK+KKSTETYKIYIFKVL
Sbjct: 1   MAPTKAEKKPAEKKPAEKTPASSEKKLKAEKKIAKDGGDKKKKKVKKSTETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lcy06g022040 vs. NCBI nr
Match: XP_022145639.1 (probable histone H2B.3 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 6.2e-59
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKP-AEKAPASAEKKPKAEKKIAKDSGDKKKKKIKKSTETYKIYIFKV 60
           MAPTK EKKPAEKKP AEKAP+SAEKKPKAEKKI K+ GDKKKKKIKKSTETYKIYIFKV
Sbjct: 1   MAPTKAEKKPAEKKPAAEKAPSSAEKKPKAEKKITKEGGDKKKKKIKKSTETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 140

[Close]

BLAST of Lcy06g022040 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSG--DKKKKKIKKSTETYKIYIFK 60
           MAP   EKKPAEKKPA KAP  AEK PKAEKKI+KD+G  +KKKKK KKS ETYKIYIFK
Sbjct: 1   MAPKAAEKKPAEKKPAGKAP--AEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTS 139
           GELAKHAVSEGTKAVTKFTS
Sbjct: 121 GELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Lcy06g022040 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-54
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPAS---------AEKKPKAEKKIAKDS----GDKKKKKIKK 60
           MAP  G KKPAEKKPAEKAPA          AEKKPKA KK+ K++     +KKKK++KK
Sbjct: 1   MAPKAG-KKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120
           STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lcy06g022040 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-54
Identity = 121/140 (86.43%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAPASAEKKPKAEKKIAKDSG-DKKKKKIKKSTETYKIYIFKV 60
           MAP   EKKPA KKPAEKAP  AEK PKAEKKI K+ G +KKKKK KK+ ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAP--AEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lcy06g022040 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 5   KGEKKPAEKKPAEKAP-----ASAEKKPKAEKKIAKD---SGDKKKKKIKKSTETYKIYI 64
           K +KKPAEKKPAEK P     A+AEKKPKA KK+ K+   +GDKKKK+ KK+ ETYKIYI
Sbjct: 3   KADKKPAEKKPAEKTPAAEPAAAAEKKPKAGKKLPKEPAGAGDKKKKRSKKNVETYKIYI 62

Query: 65  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLV 124
           FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SKLARYNKKPTITSREIQTAVRLV
Sbjct: 63  FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLV 122

Query: 125 LPGELAKHAVSEGTKAVTKFTSS 140
           LPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 LPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lcy06g022040 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-53
Identity = 125/151 (82.78%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MAPTKGEKKPAEKKPAEKAP---------ASAEKKPKAEKKIAKDS---GDKKKKKIKKS 60
           MAP K EKKPAEKKPA + P         A AEKKPKA KK+ K++   GDKKKK  KKS
Sbjct: 1   MAP-KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Lcy06g022040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1SU99	1.0e-56	90.00	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q9ZUS0	2.8e-54	87.86	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
Q9SI96	2.4e-53	82.89	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]
Q9LFF6	5.3e-53	86.43	Histone H2B.8 OS=Arabidopsis thaliana OX=3702 GN=At3g53650 PE=1 SV=3	[more]
O22582	6.9e-53	83.78	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]

BLAST of Lcy06g022040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DN75	1.4e-61	97.84	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001870 P...	[more]
A0A1S3B6N1	1.4e-61	97.84	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103486408 PE=3 SV=1	[more]
A0A6J1KUE6	4.2e-61	97.12	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111498762 PE=3 SV=1	[more]
A0A6J1H1K6	4.2e-61	97.12	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111459261 PE=3 SV=1	[more]
A0A6J1IZM1	7.9e-60	95.68	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111481391 PE=3 SV=1	[more]

BLAST of Lcy06g022040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903506.1	3.0e-61	97.84	probable histone H2B.3 [Benincasa hispida]	[more]
XP_008442575.1	3.0e-61	97.84	PREDICTED: probable histone H2B.3 [Cucumis melo] >KAA0044072.1 histone H2B-like ...	[more]
XP_022958236.1	8.7e-61	97.12	probable histone H2B.3 [Cucurbita moschata] >XP_023005892.1 probable histone H2B...	[more]
XP_022935032.1	1.6e-59	95.68	probable histone H2B.3 [Cucurbita moschata] >XP_022982546.1 probable histone H2B...	[more]
XP_022145639.1	6.2e-59	95.71	probable histone H2B.3 [Momordica charantia]	[more]

BLAST of Lcy06g022040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37470.1	2.0e-55	87.86	Histone superfamily protein	[more]
AT2G28720.1	1.7e-54	82.89	Histone superfamily protein	[more]
AT3G53650.1	3.8e-54	86.43	Histone superfamily protein	[more]
AT5G22880.1	1.4e-53	83.92	histone B2	[more]
AT5G59910.1	2.4e-53	82.78	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 123..136 score: 92.65 coord: 93..110 score: 76.51 coord: 71..91 score: 75.74 coord: 110..123 score: 92.45 coord: 52..70 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 42..138 e-value: 1.3E-72 score: 257.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..139
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 107..129
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 5..139 e-value: 2.2E-60 score: 204.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..139
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..115 e-value: 3.0E-23 score: 82.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR23428:SF273	HISTONE H2B.4	coord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g022040.1	Lcy06g022040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity