Lcy06g021150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g021150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Translation initiation factor IF-2 like
Location	Chr06: 46198341 .. 46201345 (-)
RNA-Seq Expression	Lcy06g021150
Synteny	Lcy06g021150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTTTGATTTTCATTTCCTTCACTCAGATCAATTCAGATTCATCAAAGGGTCCGCCAGTTCGTCAGAGTTGCGATCGTCTTCTTCTATCTTTTCGCAATTCGATTCGAAAATGGTAAAACCCTGAATTTCTTGCGATTGGTAGCTTGAATTTTTCTTTTACGTTTGTTTTTCGTTTCAATAGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATCCCAGTCGTCAACGCGCTGCCTGTTCTATTCGATTTAATTATGGTACGCCAATATGATTCATCTCATCTTTTTGCCTGTTCATCAAATTCTCTTCAAGATTTTTGGTTTTCTTTTGCTATTGAAGAGAATTTTGTTAACCATTTTCCCCCAATTTGGTTTTTCTTGAATTTTTCTTTTAGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGACCTGCTGCCAAACAAAATAGCAATGTGAGTGTTGTGCTATCGCTTTTACTTTATTCGTGTTTTCTAATTGTCTTCTGAAGAAGCCATTTCAATAAATTGGCCATGCTGAGGAGTCGAAGGTTAGGGAAACAGATGATTTTTTGTTGGGAAATTGGATATAAATGATGTATGCGTGTGATGGAGAAGTTTAAACTTTTGTCAATAATTTTCTTGTTGAGTGAATGCTCTTTGCTACGGTAGTTTTTGAAAACAATGGCGTTTTGGCACTTGCTGTATGTATTTGTTAATCGTTTTCTCAAGAAGCCATTTCAATTTTCAATAGTTTGGGTATGTATACTTGGTTTAACAGTGCATTTTTCCCCATGTTGAATGGATGCTTGTTGCTAATGTAGTTTTCTATACCAATTATCTTCTATCGAATTGTGATTTTGGGTAATGGTAGAATCTTCAATTTTCTTTGGTATGTGGAGATACATGTTTACTACACTAGGGAGAAAAACGAATTTCCTTTAAGACATTGGAAATGAATGATATGCGTTTTTTTTTTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTTTGATGATAAATGGTATGGTGTTTGAAATGACATTTAGCTCTGATTCATAAATTTTAAACCATAATGCTGATTAGGTACTTGTGGCCAGTATGTTGCCGTGGTAGGGTAGTTTTAAATGAGTAACGACCACTTGATGCTTATGCCTTGAGGCTCGCCTCGAGGCAATGTTGTAACTTTTATATTTGAAATTACTCCTTGACCATAAGAGGCTTATGCCTCCGTGAAATTGTACTGATACTTAGAGTCTTTACGCCTTGTGTGTTGATTAGAATAATAATATTAAGATTTTATTACAAGTTTAGTCCCTAAACTTTCAGGTTTATATTAATTAGGTCCCTGAACTTTCAAAAGTATCTAATGGGTCCTTGAACTTTCAATTTTGTGCCTACTAGGTTCCTGAACTTAAAAAATGTCGAATAGGTCAAGGACTTATTAGACACAAAATTGAAAGTTAAAGGCTTATTGGACATAAAATTGAAAGTTAAAAGCTTAGTCGACACAAGAGTGAAAGTTTAAGGACCTATTGGATACTTTTTAAAGCTTAGGAACCTATTTGAAACAAAATTGAAAGTTCAAGGATCTATTTGACGCCTTTTAAAGTTTAGAGACCAAATTGATACAATCCTGAAAGTTCAAGGACTAAACTTGTAATTTAACCTAATATTAATTTGTCCCGTTCTTAAAAATATAAAGGCCCTTTGTAATGCTAATACATACATGAGTTGTGGCAATTCAACCTATTACTAGTTTTACTATCTAGGCTCTATAAACATGGAAGACAAAAATTTATTTAATAAGTCAATATTGCACGTGATAATAGTGGTGAGGTTAAGAATCACCTTGTGAAATATTTATTTAAGTGGCAACTGACATGGGTATTTTTATTTATTTTTTATTTTTTTTTCTTTTAAAACTTTTATATAACTATTATGTTTAACCATACTTGATCATATAATTTTAGGATTTGTATAATTTTTTAAATTGAAATCAAGGCTGATGCCTCACCTCTCCGACAAGAAGCGCTGGGTTTTAGGACCTGCCCTAATTGCTTTTAATTAGTTCTGGAACGAATGAGTTAGAGATGGCTTCTTTTAAATTTGATGACATTCATAGATTTTTCTCCACCTCCAATTTTCTCTACCTTAAACTGAAAAGAGGGTATAAAGATCCCAAATCATAATGCATCGTGTATATACCAGAGCTGCAGATTACGTCAGGGATGCATACAACCCTAAGAATAAGTTGGACAGAAGATGTGCTTTTATTTTCTTGTGTGAAACGAGATGTTCATTTGCATTTGTTTGTATTTTGTATTTTGGTGTAAATATTCAGAGTTCAGACTTAACAGCAAATATCTGGGTGTTCTACACTACACCTACGGTCTTGTGGTTTTAATTCTTAAGCGTTGCTTCTTTGGCTGCTTGAAGCAAGTTTTTTCTTTATCTTAACAGGAGGAGTTAGAACCTCTGGCTGGTCAGCAACATCCACCTCCAAAAGCCGTGGATGCCGTGGATGTGAAGCATGACTGAATCTGGAATTTTCTGTTGTACATACCATCAGCAAGATCGACGACAGATGTTTGTGACCCTGAAAGCAGTGGACGCTGTCGATTTTAGGAAGCTATGATTTCCAATCGGTCAGAAAAAGAAACCTTTAGAACTCTCATCACTAATACCATCAATCAATACAGTTCATTTTGTCAGTGCATGCTTTCTGAATAACATCCACAGACTTAGTATGTATGCTTTATGAATAATTTAGCTGGATGGCTTGAATATCTTTTCCTTATTTGTAGTTAATCAATGCTCGTGGAATCAAAAAGATGAAATTGGCCTAAAGCAATGGTTTTAATTCATTGATGCCTTCTTAACTCTTCTGTTCCCAAAAGTACTTTTAACTGCCTTGTCTGCCTTTCATGCTAACGCTGTCAAGTTCTTGGAGCAAGCTGACTA

mRNA sequence

CAGTTTTGATTTTCATTTCCTTCACTCAGATCAATTCAGATTCATCAAAGGGTCCGCCAGTTCGTCAGAGTTGCGATCGTCTTCTTCTATCTTTTCGCAATTCGATTCGAAAATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATCCCAGTCGTCAACGCGCTGCCTGTTCTATTCGATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGACCTGCTGCCAAACAAAATAGCAATGAGGAGTTAGAACCTCTGGCTGGTCAGCAACATCCACCTCCAAAAGCCGTGGATGCCGTGGATGTGAAGCATGACTGAATCTGGAATTTTCTGTTGTACATACCATCAGCAAGATCGACGACAGATGTTTGTGACCCTGAAAGCAGTGGACGCTGTCGATTTTAGGAAGCTATGATTTCCAATCGGTCAGAAAAAGAAACCTTTAGAACTCTCATCACTAATACCATCAATCAATACAGTTCATTTTGTCAGTGCATGCTTTCTGAATAACATCCACAGACTTAGTATGTATGCTTTATGAATAATTTAGCTGGATGGCTTGAATATCTTTTCCTTATTTGTAGTTAATCAATGCTCGTGGAATCAAAAAGATGAAATTGGCCTAAAGCAATGGTTTTAATTCATTGATGCCTTCTTAACTCTTCTGTTCCCAAAAGTACTTTTAACTGCCTTGTCTGCCTTTCATGCTAACGCTGTCAAGTTCTTGGAGCAAGCTGACTA

Coding sequence (CDS)

ATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATCCCAGTCGTCAACGCGCTGCCTGTTCTATTCGATTTAATTATGGGCAAAATTTATGGAATTTTTGGCTGGGAATATAGAAAACCACAGAGGGTACCGCCGGCTTGTCCCTATCGACCTGCTGCCAAACAAAATAGCAATGAGGAGTTAGAACCTCTGGCTGGTCAGCAACATCCACCTCCAAAAGCCGTGGATGCCGTGGATGTGAAGCATGACTGA

Protein sequence

MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNEELEPLAGQQHPPPKAVDAVDVKHD

Homology

[Close]

BLAST of Lcy06g021150 vs. ExPASy TrEMBL
Match: A0A6J1F5U6 (uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442415 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEP AGQQ PPPK VDA+D K D
Sbjct: 61 ELEPPAGQQLPPPKVVDAMDDKQD 84

[Close]

BLAST of Lcy06g021150 vs. ExPASy TrEMBL
Match: A0A6J1KWU0 (uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 78/84 (92.86%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIY IFGWEY KPQRVPPACPYRPAAKQN NE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN-NE 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEPLAGQQHPPPKAVDAVD K D
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 83

[Close]

BLAST of Lcy06g021150 vs. ExPASy TrEMBL
Match: A0A0A0LB44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEPLAGQQHPPPK VDA+D K D
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Lcy06g021150 vs. ExPASy TrEMBL
Match: A0A1S3B744 (uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEPLAGQQHPPPK VDA+D K D
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Lcy06g021150 vs. ExPASy TrEMBL
Match: A0A6J1CU80 (uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014385 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.7e-34
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYG+FGWEYRKP+RVPPACPYRPAAKQN N 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPERVPPACPYRPAAKQNGNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEP AGQQHP PKAVDAVD K D
Sbjct: 61 ELEPQAGQQHPLPKAVDAVDTKED 84

[Close]

BLAST of Lcy06g021150 vs. NCBI nr
Match: XP_023538875.1 (uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 79/84 (94.05%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIY IFGWEYRKPQ VPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYRKPQGVPPACPYRPAAKQNSNE 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEPLAGQQHPPPKAVDAVD K D
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 84

[Close]

BLAST of Lcy06g021150 vs. NCBI nr
Match: XP_038903023.1 (uncharacterized protein LOC120089725 [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLF LIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          +LEPLAGQQHPPPKAVDA D K D
Sbjct: 61 DLEPLAGQQHPPPKAVDAADEKQD 84

[Close]

BLAST of Lcy06g021150 vs. NCBI nr
Match: KAG6580623.1 (putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
           MVCLACLLPLFLIPVVNALP+LFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 291 MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 350

Query: 61  ELEPLAGQQHPPPKAVDAVDVKHD 85
           ELEPL GQQ PPPK VDAVD K D
Sbjct: 351 ELEPLVGQQLPPPKVVDAVDEKQD 374

[Close]

BLAST of Lcy06g021150 vs. NCBI nr
Match: KAG7017382.1 (hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALP+LFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPLLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          ELEPL GQQ PPPK VDAVD K D
Sbjct: 61 ELEPLVGQQLPPPKVVDAVDEKQD 84

[Close]

BLAST of Lcy06g021150 vs. NCBI nr
Match: KAG6596489.1 (hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+ LIMGKIY IFGWEY KPQRVPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60

Query: 61 ELEPLAGQQHPPPKAVDAVDVKHD 85
          EL+PLAGQQHPPPKAVDA D K D
Sbjct: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84

[Close]

BLAST of Lcy06g021150 vs. TAIR 10
Match: AT5G03460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 9.3e-16
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNS 59
          MVC+ CL+PLFL+P++N +P + D  M K+Y   GWEYRKP RVPPACP++P AK ++
Sbjct: 1  MVCVMCLVPLFLVPLINLMPRIIDYFMAKLYAWLGWEYRKPARVPPACPFKPVAKNDN 58

The following BLAST results are available for this feature:

BLAST of Lcy06g021150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g021150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5U6	1.2e-34	91.67	uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KWU0	2.6e-34	92.86	uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307...	[more]
A0A0A0LB44	2.6e-34	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1	[more]
A0A1S3B744	2.6e-34	90.48	uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=...	[more]
A0A6J1CU80	7.7e-34	89.29	uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Lcy06g021150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538875.1	1.0e-35	94.05	uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo]	[more]
XP_038903023.1	2.2e-35	92.86	uncharacterized protein LOC120089725 [Benincasa hispida]	[more]
KAG6580623.1	1.1e-34	91.67	putative xyloglucan endotransglucosylase/hydrolase protein 32, partial [Cucurbit...	[more]
KAG7017382.1	1.1e-34	91.67	hypothetical protein SDJN02_19247 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596489.1	1.9e-34	90.48	hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy06g021150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03460.1	9.3e-16	56.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..84
None	No IPR available	PANTHER	PTHR37756	TRANSMEMBRANE PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g021150.1	Lcy06g021150.1	mRNA