Lcy06g020710 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g020710
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L24
Location	Chr06: 45567565 .. 45569762 (-)
RNA-Seq Expression	Lcy06g020710
Synteny	Lcy06g020710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCAAGTTCGTCAAAATCCTTCATCTCTATTTCCATGTCTTTTTAGATCTGATGGTTGACATTTGGATTCCATCTACTTCTGTTTTCATTCATATGTTGAGATGTTTTCCTGGTTCCGTTTTCGAATTCGTACGTCCAGCGTAAATGCTTGAGAAATCTAGGGTTTTCCGTGTGTTTGAATGTGAGGATTAGGATATTGCTTGAAAATCTTCCGTTTGAGAATCTCTAAATCTTTAACGAGGTTCGGTGTGGTCTTTTTCTCTTGTGAAAAGTTTCATTAGTTCATTTATGAAAGCACAATCACGGTTGTTGTTGCCGAGGTAAATATGGCCAACATTGGGAACGGCATCTGTTATGTTTTCGTGAACTGGTTGGAAGGAAGTATTTCTGATGGAAAATTAGTCGCAGGGTTTGTGGTTTGATTAAAGGGGACGGTTTAGATGATGAGTTGTTTGTTTCTTGGAACCATTACTGTACTTTATTGTTTGAACAAGTGGGTGCTTTGGATAATTGTAGCATGGTTACTTGTTGAAACTAAGTTTGAGAGCTTTGATGTTCACGTGCTCGATTTTGTTCATGGACTCTGTATGTGGGAAATAAGTTTATGGGCCAATATGGTTAACCTAGCCCTCTTTTAAATATGTTTAAGAGATGTGAGTTCTGCCCCTAATAGTTTGATACTGGCGTTTCAGGACTGAGCTCTGTCGATTCAGTGGTGCCAAGATATATCCAGGGAAAGGTATCAGATTCGTCCGGGCTGATTCTCAGGTGATTTTGATTACCATATTTTAGACATCTTTTAAGATAGATAAATTGATAAGTTTGATTTCGTAATAATGATAGAAAACTTTGTAAACACTTCGTAAGTAACCCCAACCTCTAGAATGGGGTTTGGAGGTTTTCTATTACATTCATTTGAATTACACTTAAAACCGTTTTTTTCCTAGTTTTTCCTTTTTTTTTTTGACTTTTTCTCTGTCAATCTGTTAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACAGGCTGAAGCCGTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGTAATATTAAGATTTTCTATGGACATTGCTTTTATCTTTTATTTTTTTCTTCATTTTGTAAATTTCAAAACAATCTCACCAGGGGACTACCAACTAGTCAGCTTTCTACTCTATTGATGGGGTCTAATGTGCTATAATTTCCACCTAGGATTAGTTTTGCAAATACTAATCACCTTTCTCGCTGTTTTTTGTGTCACAATTAATTGTAAGAACTAGATGTTGTTGGATCTAGTAGTCAAATTGGGAATAATAATGGATTTAGAGGGAATGAGTTCAAGCCATGATGACTATGTACCTAAGATTTAATATTCTACGAGTTCTCTTGGCAACTAAATGTAGTAGGGTCAAGCAATTGCTCTATGAGATTACGTTGTTGAGGCGTGGGCAAGTGGGCTCAAATACTCACATATAATAGAAAGAACGAGATCCAAACCTAGAATTTATAATGTGTAGTAGTAATTTAACAGTTATACCAAGAGGCATCGTGTACATACAAATGTTGCTTTGGCATTACTATTTTTATATTTAAGATTGATGGTACACATGTTTAGTTTTTATGACCAAAATGTTTTCATAGTCCTCCATTTGCAAGTGTTAAGTAATTTAATCATCCCTGAACCCTGGTCTTATTCGTTTCTCTCTGAATGTTATTTTGTGCGTTTGCTGCGGGCAATTGATCTTTATTCATCTTGTTTTGAAATTCGCAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCTACCAAGAAGCCCTACTCTCGATCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCGGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGTATGAACGATTGAGAACTAGAACATAAATATTATAATTGAAACACATAAATTTGTACTGAATCCATGGATTTTGATTGAATTGCAGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCCCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGTACCCAAGGGTCCAAAGCTCGGCGGTGGCGGTGGAAAGCGTTGA

mRNA sequence

ATGGTTCTCAAGTTCGTCAAAATCCTTCATCTCTATTTCCATGTCTTTTTAGATCTGATGGTTGACATTTGGATTCCATCTACTTCTGTTTTCATTCATATGTTGAGATGTTTTCCTGGTTCCGTTTTCGAATTCTTCATTTATGAAAGCACAATCACGGTTGTTGTTGCCGAGGTAAATATGGCCAACATTGGGAACGGCATCTGTTATGTTTTCGTGAACTGGTTGGAAGGAAGTATTTCTGATGGAAAATTAGTCGCAGGGACTGAGCTCTGTCGATTCAGTGGTGCCAAGATATATCCAGGGAAAGGTATCAGATTCGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACAGGCTGAAGCCGTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCTACCAAGAAGCCCTACTCTCGATCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCGGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCCCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGTACCCAAGGGTCCAAAGCTCGGCGGTGGCGGTGGAAAGCGTTGA

Coding sequence (CDS)

ATGGTTCTCAAGTTCGTCAAAATCCTTCATCTCTATTTCCATGTCTTTTTAGATCTGATGGTTGACATTTGGATTCCATCTACTTCTGTTTTCATTCATATGTTGAGATGTTTTCCTGGTTCCGTTTTCGAATTCTTCATTTATGAAAGCACAATCACGGTTGTTGTTGCCGAGGTAAATATGGCCAACATTGGGAACGGCATCTGTTATGTTTTCGTGAACTGGTTGGAAGGAAGTATTTCTGATGGAAAATTAGTCGCAGGGACTGAGCTCTGTCGATTCAGTGGTGCCAAGATATATCCAGGGAAAGGTATCAGATTCGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACAGGCTGAAGCCGTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCTACCAAGAAGCCCTACTCTCGATCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCGGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGATGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCCCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGTACCCAAGGGTCCAAAGCTCGGCGGTGGCGGTGGAAAGCGTTGA

Protein sequence

MVLKFVKILHLYFHVFLDLMVDIWIPSTSVFIHMLRCFPGSVFEFFIYESTITVVVAEVNMANIGNGICYVFVNWLEGSISDGKLVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR

Homology

[Close]

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.2e-73
Identity = 145/163 (88.96%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGK 248
           KTKDEKKAKKAEV +K+QK+ GKGNV KGA+PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.2e-69
Identity = 143/160 (89.38%), Postives = 150/160 (93.75%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPK-GAVPKGPKLGG 244
           KTKDEKKAKKAEV  KSQK+ GKG++ K GA PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 3.6e-68
Identity = 137/164 (83.54%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKK E  +K QK+  KGN+PK A PK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.4e-66
Identity = 139/164 (84.76%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEV    +   GKG V KG+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 9.7e-66
Identity = 138/165 (83.64%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPK-GAVPKGPKLGGGGGKR 249
           KTKDEKKAKK E  +K QK   K N PK  A  KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL
Match: A0A6J1L0R7 (60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.3e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL
Match: A0A6J1GGJ5 (60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.3e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL
Match: A0A6J1CUE5 (60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.7e-76
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEVLAKSQKAPGKG+VPKGA+PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL
Match: A0A0A0LGG6 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 7.0e-75
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEVLAKSQKAPGKGNV KG   KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL
Match: A0A5A7TPC8 (60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003320 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.2e-74
Identity = 157/172 (91.28%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 77  EGSISDGKLVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT 136
           + S  D   +  TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT
Sbjct: 51  QASALDNCFMITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT 110

Query: 137 WTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 196
           WTAMYRKQHKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 111 WTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 170

Query: 197 REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNV KG   KGPKLGGGGGKR
Sbjct: 171 REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of Lcy06g020710 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. NCBI nr
Match: KAG6596527.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028061.1 60S ribosomal protein L24 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-76
Identity = 157/164 (95.73%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEV+AKSQKAPGKGNVPKGA PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. NCBI nr
Match: XP_022144771.1 (60S ribosomal protein L24 [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 7.6e-76
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEVLAKSQKAPGKG+VPKGA+PKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. NCBI nr
Match: XP_004137862.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa_002195 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-74
Identity = 157/164 (95.73%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKKAEVLAKSQKAPGKGNV KG   KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Lcy06g020710 vs. NCBI nr
Match: KAA0043936.1 (60S ribosomal protein L24-like [Cucumis melo var. makuwa] >TYK25203.1 60S ribosomal protein L24-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 2.5e-74
Identity = 157/172 (91.28%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 77  EGSISDGKLVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT 136
           + S  D   +  TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT
Sbjct: 51  QASALDNCFMITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLT 110

Query: 137 WTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 196
           WTAMYRKQHKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL
Sbjct: 111 WTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 170

Query: 197 REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNV KG   KGPKLGGGGGKR
Sbjct: 171 REIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of Lcy06g020710 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-69
Identity = 137/164 (83.54%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPKGAVPKGPKLGGGGGKR 249
           KTKDEKKAKK E  +K QK+  KGN+PK A PK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Lcy06g020710 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 251.5 bits (641), Expect = 6.9e-67
Identity = 138/165 (83.64%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 85  LVAGTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 144
           +V  TELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 145 HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 204
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 205 KTKDEKKAKKAEVLAKSQKAPGKGNVPK-GAVPKGPKLGGGGGKR 249
           KTKDEKKAKK E  +K QK   K N PK  A  KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Lcy06g020710 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-11
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 90  ELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI 149
           E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 150 AQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 209
            ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 210 TKDEK 211
            K +K
Sbjct: 124 NKQKK 119

[Close]

BLAST of Lcy06g020710 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-11
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 90  ELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI 149
           E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 150 AQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 209
            ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 210 TKDEK 211
            K +K
Sbjct: 124 NKQKK 119

The following BLAST results are available for this feature:

BLAST of Lcy06g020710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	8.2e-73	88.96	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	7.2e-69	89.38	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	3.6e-68	83.54	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P50888	4.4e-66	84.76	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
P38666	9.7e-66	83.64	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of Lcy06g020710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0R7	1.3e-76	95.73	60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1	[more]
A0A6J1GGJ5	1.3e-76	95.73	60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=...	[more]
A0A6J1CUE5	3.7e-76	95.73	60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV...	[more]
A0A0A0LGG6	7.0e-75	95.73	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 ...	[more]
A0A5A7TPC8	1.2e-74	91.28	60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lcy06g020710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951028.1	2.6e-76	95.73	60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro...	[more]
KAG6596527.1	2.6e-76	95.73	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022144771.1	7.6e-76	95.73	60S ribosomal protein L24 [Momordica charantia]	[more]
XP_004137862.1	1.4e-74	95.73	60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa...	[more]
KAA0043936.1	2.5e-74	91.28	60S ribosomal protein L24-like [Cucumis melo var. makuwa] >TYK25203.1 60S riboso...	[more]

BLAST of Lcy06g020710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	2.5e-69	83.54	ribosomal protein L24	[more]
AT3G53020.1	6.9e-67	83.64	Ribosomal protein L24e family protein	[more]
AT2G44860.1	2.4e-11	37.60	Ribosomal protein L24e family protein	[more]
AT2G44860.2	2.4e-11	37.60	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 196..220
None	No IPR available	GENE3D	6.10.250.1270		coord: 153..222 e-value: 7.9E-22 score: 79.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..220
None	No IPR available	PANTHER	PTHR10792:SF40	60S RIBOSOMAL PROTEIN L24	coord: 84..248
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 90..142
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 92..130 e-value: 4.1E-4 score: 29.7
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 88..148 e-value: 1.2E-32 score: 114.0
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 89..151 e-value: 1.2E-27 score: 96.0
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 84..248
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 89..140 e-value: 3.1779E-20 score: 79.1534
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 94..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g020710.1	Lcy06g020710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome