Lcy06g020220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g020220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LITTLE ZIPPER 4
Location	Chr06: 44920343 .. 44921846 (-)
RNA-Seq Expression	Lcy06g020220
Synteny	Lcy06g020220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCTTTCTTTCTTCTTCTTCTTCTTCCTTCCTTTGTGATTCTACTTCTTCTACAAGTGCTTCTGTTCCAAAATCCACATTGTTTTTGAAAAAGGTGATCTTTTTTGAAAAGATAAAGAAAAAACAACAGACACCCACTTTCTCTCTCCTCTCTATTTCTCTCTCTCTCTCTCTATATATTTTTTAATTTTTTTGGCCATTTTGGTTCCTTCTTCTTCTTCCTTCCCTTTCACCAACAAAGGTAGACATACCCTTGTGTTGTGGGGTACTTGGTTTTTTAAAAAAAATGGTTCTTTTTGTTGTTTAAATAAATTCTAATATCTTCTTCTTCTTCTTCTTCTTATTCTTATCAAAGTTTTTATTTTTATGTTTATTTACCTCATTTTTTGGAGTGAATGTCCTTGGATTCTTCTATCTTAAAAAAGTCTTTTTTCTTTGTCCTTCAACCAATTTCCTCTGTTTCTGTTTCTGTGTTTGTTTGTACTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAAACCCACAAAAAAAAGGTTCAAAATTTTGATTTTTATTTTTTTGGTTGAGTGGCTGAATGAATCTAACTTTAATTTTATCCTTTTCTTTCAAATTTGGGCAACCGAAAGAAGAAGCCATTTCTCTCACAATGAGTGAAGATTTTGACATCCATATCCTTATTCTTCTCCCATGTCTACCTTCTTTGGCCTTTTTCCTCTTCCATTTTTTAAATTTTCAATCATTTTTTTTTTTTAATTTTAAATTCATCAAGTTTCCATTTTTTTTAATTTAATAAAAAAAAAAATCCCCTGTTTCAAAGCTGTTTTTTTGCCTCTTCTTTTTCCCATTTGCTCTCTCTCTCTCTCTCTTTTCAGCTCTCATTATTACATATGGCTAAGGCTAAAGCTTCTTCTTCTTCTTCTTATTCTTCTTCTCCATCACTGTTGAATTTATCACTCTCTATAAATAAATTTCATTCTTCTTTTCAATTTCCAATCCAAAACCCATTTCAACCTTCAACTTGTTTGCTCCTAATTCCTCTTCTTCCTCTGTTTTTTTTTTCCTTTTTGAGGAACTTTTTCTGATTTACTTCTTTTTTTTTTTCAGGATAAGGGCAAAGAAGAAGAAGGGTTGTTTGGATTTTGAGAGAAGAATTGATTGATATATAAATAAAATAATTTATTTATATTATCAATCAAATTGATTTGGCAGAGGAAAATGGAGAGGCTAAACTCAGATCTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTCAATCTCTCCTCTGCTTCTGTCACAAATCCTTCTAATTCTTCCAATTGATTTCAAAATATCAATGGAAGAAGAAGAAGAAGAAG

mRNA sequence

CATTTCTTTCTTTCTTCTTCTTCTTCTTCCTTCCTTTGTGATTCTACTTCTTCTACAAGTGCTTCTGTTCCAAAATCCACATTGTTTTTGAAAAAGGATAAGGGCAAAGAAGAAGAAGGGTTGTTTGGATTTTGAGAGAAGAATTGATTGATATATAAATAAAATAATTTATTTATATTATCAATCAAATTGATTTGGCAGAGGAAAATGGAGAGGCTAAACTCAGATCTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTCAATCTCTCCTCTGCTTCTGTCACAAATCCTTCTAATTCTTCCAATTGATTTCAAAATATCAATGGAAGAAGAAGAAGAAGAAG

Coding sequence (CDS)

ATGGAGAGGCTAAACTCAGATCTGTACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAGCTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTGTCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATCCCTGATCTCAATCTCTCCTCTGCTTCTGTCACAAATCCTTCTAATTCTTCCAATTGA

Protein sequence

MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDLNLSSASVTNPSNSSN

Homology

[Close]

BLAST of Lcy06g020220 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-14
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLS--KGNSKANASKSIP 60
          MERLNS LYLQNCYI+KENERLRKKAQ+LNQENQ LL ELKQKLS  K +S +N   +  
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 DLNLSSAS 67
          + NLSS+S
Sbjct: 61 NNNLSSSS 68

[Close]

BLAST of Lcy06g020220 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.4e-13
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAS 67
            SSAS
Sbjct: 61 KSSSAS 64

[Close]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANA-SKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NA SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSASVTNPSNSSN 76
          LNLSSASVTNPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL
Match: A0A1S3B7E3 (protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.6e-25
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL
Match: A0A0A0LE03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.6e-25
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL
Match: A0A6J1J6J7 (protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-24
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL
Match: A0A6J1F606 (protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-24
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANA-SKSIPD 60
          MERLNSDLYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NA SKSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSASVTNPSNSSN 76
          LNLSSASVTNPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

[Close]

BLAST of Lcy06g020220 vs. NCBI nr
Match: XP_008442826.1 (PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_011652008.1 protein LITTLE ZIPPER 4 [Cucumis sativus] >XP_038905261.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905262.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905263.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >KGN59119.1 hypothetical protein Csa_001986 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. NCBI nr
Match: XP_022935644.1 (protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPPER 4 [Cucurbita maxima] >XP_023526116.1 protein LITTLE ZIPPER 4 [Cucurbita pepo subsp. pepo] >KAG7017444.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSASVTNPSNSSN 76
          NLSSA   NPSNSSN
Sbjct: 61 NLSSA---NPSNSSN 72

[Close]

BLAST of Lcy06g020220 vs. NCBI nr
Match: XP_007027705.2 (PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976700.1 PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976701.1 PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao])

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSK N++ +IPDL
Sbjct: 1  MERLNSNLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKGNSANTIPDL 60

Query: 61 NLSSASVTNPSNSS 75
          NLSS+S  NPSNSS
Sbjct: 61 NLSSSSNPNPSNSS 74

[Close]

BLAST of Lcy06g020220 vs. NCBI nr
Match: XP_017976698.1 (PREDICTED: protein LITTLE ZIPPER 4 isoform X1 [Theobroma cacao])

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
           MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSK N++ +IPDL
Sbjct: 41  MERLNSNLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKGNSANTIPDL 100

Query: 61  NLSSASVTNPSNSS 75
           NLSS+S  NPSNSS
Sbjct: 101 NLSSSSNPNPSNSS 114

[Close]

BLAST of Lcy06g020220 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 74.3 bits (181), Expect = 4.6e-14
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAS 67
            SSAS
Sbjct: 61 KSSSAS 64

[Close]

BLAST of Lcy06g020220 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1   MERLNSDLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 44
           ME +N  LY++N  I++ENE+L+KKA LL+QEN+ L S L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:

BLAST of Lcy06g020220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56WL5	3.4e-14	70.59	Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1	[more]
Q9LXI8	6.4e-13	68.18	Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1	[more]

BLAST of Lcy06g020220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CT31	2.6e-25	93.42	protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1	[more]
A0A1S3B7E3	7.6e-25	94.67	protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1	[more]
A0A0A0LE03	7.6e-25	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1	[more]
A0A6J1J6J7	6.4e-24	92.00	protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1	[more]
A0A6J1F606	6.4e-24	92.00	protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1	[more]

BLAST of Lcy06g020220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144704.1	5.4e-25	93.42	protein LITTLE ZIPPER 4 [Momordica charantia]	[more]
XP_008442826.1	1.6e-24	94.67	PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: pro...	[more]
XP_022935644.1	1.3e-23	92.00	protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPP...	[more]
XP_007027705.2	6.6e-23	87.84	PREDICTED: protein LITTLE ZIPPER 4 isoform X3 [Theobroma cacao] >XP_017976700.1 ...	[more]
XP_017976698.1	6.6e-23	87.84	PREDICTED: protein LITTLE ZIPPER 4 isoform X1 [Theobroma cacao]	[more]

BLAST of Lcy06g020220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52770.1	4.6e-14	68.18	protein binding	[more]
AT2G45450.1	1.5e-04	53.49	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..75
None	No IPR available	PANTHER	PTHR33601:SF1	PROTEIN LITTLE ZIPPER 4	coord: 1..74
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g020220.1	Lcy06g020220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane