Lcy06g016880 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g016880
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr06: 38742536 .. 38743087 (-)
RNA-Seq ExpressionLcy06g016880
SyntenyLcy06g016880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA

mRNA sequence

ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA

Coding sequence (CDS)

ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA

Protein sequence

MDSITPHELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFEVWILYVSTHREDLTTSF
Homology
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.4e-48
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L++ LLKKP+P+   C D RWKWFE
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 100/160 (62.50%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L++ LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TI RHFN     V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L++ LLKKP+P+   C D RWKWFE
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-47
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TI RHFN     V+ L+D LLKKP+P+   C D RW+WFE
Sbjct: 124 TIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-47
Identity = 100/160 (62.50%), Postives = 122/160 (76.25%), Query Frame = 0

Query: 7   HELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRE 66
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 67  STRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGE 126
           STRMDRRCFAILC  LLRT +GL  T++VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGE
Sbjct: 64  STRMDRRCFAILCH-LLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGE 123

Query: 127 TISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFE 167
           TISRHFN  L  V+ L++ LLKKP+P+   C D RW+WFE
Sbjct: 124 TISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

BLAST of Lcy06g016880 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-10
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 54  FRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVK 113
           +++++  +  C E+ RMD+  F  LC  LL+T   L  T  + +E  +A+FL I+ H+++
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCD-LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLR 91

Query: 114 NRVIRRQFARSGETISRHFNATLSVVLLL 143
            R ++  F  SGETISRHFN  L+ V+ +
Sbjct: 92  TRAVQELFCYSGETISRHFNNVLNAVIAI 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TXW14.1e-4863.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD84.1e-4863.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U4765.4e-4863.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDX01.2e-4762.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VHB01.2e-4762.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0046727.18.5e-4863.13retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0034843.18.5e-4863.13retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048361.11.1e-4763.13retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065736.12.5e-4762.50retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035620.12.5e-4762.50retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon... [more]
Match NameE-valueIdentityDescription
AT5G41980.14.4e-1037.08CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 37..166
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 37..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g016880.1Lcy06g016880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding