Lcy06g016880 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA ATGGATTCCATAACCCCACATGAACTTGTCTCCATACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAGTTAGCCTGCTTTCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGCTGAGAACGACTTCCGGGTTGGTAGGAACGAAAATCGTAGACGTGGAAGAGATGGTTGCGATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGACAGTTTGCACGGTCAGGCGAGACCATTTCTCGGCACTTCAACGCGACTTTGAGTGTCGTACTACTATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTAGTACACATCGTGAAGATCTTACAACATCTTTCTGA MDSITPHELVSILSIMADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSLLLRTTSGLVGTKIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETISRHFNATLSVVLLLYDVLLKKPEPITASCQDGRWKWFEVWILYVSTHREDLTTSF Homology
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 4.1e-48 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 5.4e-48 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47 Identity = 100/160 (62.50%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47 Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 0
BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 201.1 bits (510), Expect = 8.5e-48 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47 Identity = 101/160 (63.12%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 199.5 bits (506), Expect = 2.5e-47 Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 0
BLAST of Lcy06g016880 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 199.5 bits (506), Expect = 2.5e-47 Identity = 100/160 (62.50%), Postives = 122/160 (76.25%), Query Frame = 0
BLAST of Lcy06g016880 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 4.4e-10 Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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