Lcy06g006130 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g006130
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr06: 5763199 .. 5763627 (+)
RNA-Seq ExpressionLcy06g006130
SyntenyLcy06g006130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCGAATGGTTCCACGATCTGCATCGGATTTCAACAAATTAACCAAAAATGGCCTATCATTTATCAAGTACCTAGAAGCTAAAGCCATCTTGGAAGGCTTGAAGATGGTGAGTGATACCTGTCTTCGGAACAACATCCCTTTGGAAATCGAGTCTGACGCCATAGAAGTCGTCCAAATTCTTTCAGGGACGGCGAAGGATTTATCGGAGACGAAGACGATTACGGACGCCATTCTCGATCTCTCATCTCGATTTCAAGATGTCTCATTTAGACATTGTGGTAGAAATTCCAATACAGTAGCCCACTGTGGGGCAAAGTTTGGTTGTAATTTTGTTTTTGATGTTGTAGACTCTCAGGCAGCCTCCCATTCGTGGGAAAAAGGGCAGTTGTTTTGGGCTCCTGATCTTCCTCCTTGGTTCTTTTAG

mRNA sequence

ATGACTCGAATGGTTCCACGATCTGCATCGGATTTCAACAAATTAACCAAAAATGGCCTATCATTTATCAAGTACCTAGAAGCTAAAGCCATCTTGGAAGGCTTGAAGATGGTGAGTGATACCTGTCTTCGGAACAACATCCCTTTGGAAATCGAGTCTGACGCCATAGAAGTCGTCCAAATTCTTTCAGGGACGGCGAAGGATTTATCGGAGACGAAGACGATTACGGACGCCATTCTCGATCTCTCATCTCGATTTCAAGATGTCTCATTTAGACATTGTGGTAGAAATTCCAATACAGTAGCCCACTGTGGGGCAAAGTTTGGTTGTAATTTTGTTTTTGATGTTGTAGACTCTCAGGCAGCCTCCCATTCGTGGGAAAAAGGGCAGTTGTTTTGGGCTCCTGATCTTCCTCCTTGGTTCTTTTAG

Coding sequence (CDS)

ATGACTCGAATGGTTCCACGATCTGCATCGGATTTCAACAAATTAACCAAAAATGGCCTATCATTTATCAAGTACCTAGAAGCTAAAGCCATCTTGGAAGGCTTGAAGATGGTGAGTGATACCTGTCTTCGGAACAACATCCCTTTGGAAATCGAGTCTGACGCCATAGAAGTCGTCCAAATTCTTTCAGGGACGGCGAAGGATTTATCGGAGACGAAGACGATTACGGACGCCATTCTCGATCTCTCATCTCGATTTCAAGATGTCTCATTTAGACATTGTGGTAGAAATTCCAATACAGTAGCCCACTGTGGGGCAAAGTTTGGTTGTAATTTTGTTTTTGATGTTGTAGACTCTCAGGCAGCCTCCCATTCGTGGGAAAAAGGGCAGTTGTTTTGGGCTCCTGATCTTCCTCCTTGGTTCTTTTAG

Protein sequence

MTRMVPRSASDFNKLTKNGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAASHSWEKGQLFWAPDLPPWFF
Homology
BLAST of Lcy06g006130 vs. ExPASy TrEMBL
Match: A0A803L9N8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 18  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITD 77
           NG   I  +EA A+L G++ V D   R    LE+ SD ++V+++L+G+  + S T+ I  
Sbjct: 171 NGTGIISEIEAVALLFGMRAVFDAGFRK---LEVSSDCLQVIELLNGSKHENSPTQLIVT 230

Query: 78  AILDLSSRFQDVSFRHCGRNSNTVAH 104
            IL  +  F  V F  C R  N VAH
Sbjct: 231 DILSFAYSFDFVCFSFCPRLCNKVAH 253

BLAST of Lcy06g006130 vs. NCBI nr
Match: KAF7814608.1 (putative ZmL1 non-LTR retrotransposon protein [Senna tora])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-06
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 0

Query: 19  GLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDA 78
           G+  I+YLEA AILEG+K   +    N   +E+E D  +V  +L  +  DLS  + I + 
Sbjct: 385 GVQSIEYLEALAILEGIKFAKE---MNCNKIEVEGDCKKVYDLLLSSKLDLSYLRLIVEN 444

Query: 79  ILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAASHSWEKGQLFWAPDLP 138
           ILD  S+F  +SF+   R++N VAH   K   NF      S   S+S     + W  D P
Sbjct: 445 ILDFKSQFDLLSFKWASRDANMVAHTLVKADFNF------SDVTSNS-----VVWLEDFP 490

BLAST of Lcy06g006130 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-06
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 23  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDL 82
           ++  EAKAI  GL++ +   +R+   L +ESD ++V+Q L     DLSE   I D IL L
Sbjct: 204 VRIAEAKAIEWGLRVAAGLGVRD---LVVESDCLQVIQALKNKTADLSELSLIIDDILLL 263

Query: 83  SSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAASHSWEKGQLFWAPDLP 139
            S F +V + +  R  N VAH  A F               H WE GQ  W   +P
Sbjct: 264 CSSFDNVIWSYVKRGGNKVAHFWAHF---------------HPWEVGQRVWQDVIP 301

BLAST of Lcy06g006130 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 43/127 (33.86%), Postives = 60/127 (47.24%), Query Frame = 0

Query: 13  NKLTKNGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSET 72
           +K  K G + I+Y+EA A+LEG+K     C    I   IESDA  VV +L+    D+S  
Sbjct: 529 SKKVKTGAT-IEYVEALAVLEGMKQAQLMCCNRII---IESDAQRVVNLLNKGNIDISYL 588

Query: 73  KTITDAILDLSSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAASHSWEKGQLF 132
             + + IL+L S F  +SF    R +N VAH  A    NF ++               + 
Sbjct: 589 GLVIEEILELKSHFSSISFNWVKREANMVAHTLAHSVVNFPYN-----------SPNFIV 640

Query: 133 WAPDLPP 140
           W  D PP
Sbjct: 649 WLEDFPP 640

BLAST of Lcy06g006130 vs. NCBI nr
Match: KAF7822031.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 39/117 (33.33%), Postives = 53/117 (45.30%), Query Frame = 0

Query: 23  IKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITDAILDL 82
           I+Y+EA A+LEG+K     C    I   IESDA  VV +L+    D+S    + + IL+L
Sbjct: 648 IEYVEALAVLEGMKQAQLMCCNRII---IESDAQRVVNLLNKGNTDVSYLGLVNEDILEL 707

Query: 83  SSRFQDVSFRHCGRNSNTVAHCGAKFGCNFVFDVVDSQAASHSWEKGQLFWAPDLPP 140
            S F  + F    R +N VAH  A    NF  +               + W  D PP
Sbjct: 708 KSHFSSIPFNWVKREANMVAHTLAHSVVNFPVN-----------SPNFIVWLEDFPP 750

BLAST of Lcy06g006130 vs. NCBI nr
Match: XP_021763631.1 (uncharacterized protein LOC110728264 [Chenopodium quinoa])

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-04
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 18  NGLSFIKYLEAKAILEGLKMVSDTCLRNNIPLEIESDAIEVVQILSGTAKDLSETKTITD 77
           NG   I  +EA A+L G++ V D   R    LE+ SD ++V+++L+G+  + S T+ I  
Sbjct: 171 NGTGIISEIEAVALLFGMRAVFDAGFRK---LEVSSDCLQVIELLNGSKHENSPTQLIVT 230

Query: 78  AILDLSSRFQDVSFRHCGRNSNTVAH 104
            IL  +  F  V F  C R  N VAH
Sbjct: 231 DILSFAYSFDFVCFSFCPRLCNKVAH 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803L9N82.2e-0437.21Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAF7814608.11.6e-0635.83putative ZmL1 non-LTR retrotransposon protein [Senna tora][more]
XP_021753633.14.8e-0635.34uncharacterized protein LOC110719026 [Chenopodium quinoa][more]
KAF7821986.11.4e-0533.86putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c... [more]
KAF7822031.12.0e-0433.33putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c... [more]
XP_021763631.14.5e-0437.21uncharacterized protein LOC110728264 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 27..108
e-value: 1.1E-13
score: 51.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 10..111
e-value: 3.6E-8
score: 35.5
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 27..107
e-value: 2.10267E-13
score: 60.7908
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 25..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g006130.1Lcy06g006130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity