Lcy05g013900 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g013900
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 16812139 .. 16814026 (+)
RNA-Seq ExpressionLcy05g013900
SyntenyLcy05g013900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAATTTTTTTCTATAAAATTTGAAAATAATCTTCAAATTAACAATCAGTACCAATTTAAAGATTTATTTTAAGTAATTAAACTATATTGGACATTTATAAGTGTAAAGACAACAATTTGGAATACATTTTAGTTTAAGTGTTTTTCAAGATGCATTTTTTTAAAACATTTTGTAACAAAATTGTTTAGAATTTAATATGGTTGGTTACATTTTCTTGTAAGTATTTTTATACACAAGTTATTGTATATTTAAAATCTCTTTGTAAAAAAAATGTTCTGAAGTGTTTATCTCAAAATGATTTAGGGTGCGTTTGGAATACCTTTTAATTTAAGTGTTTTTAAAGAATGTATTTTATTATAAACATTTTGCATAAAATGATTTAAAATTTAAACACTCATATGTTTGGTTACACTTGTTCATAAGTGTTTTTATACCCAAGTTACTATATGCTTAACAACTCTTTTTAAAAATAGTTGCTTTCAAGTGTTTCTCTTAAAATGTATTATTTCTCAATCTCATTTTTTAATAAGTCATTTTTAGTGGTTGCCAAACACTATAATTTCTTTCAAAATGATTTTTTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACCCTTATTTGTCAATCTCATTTTTTAATAAGTCATTTTTAGTGGTTGCTAAACACTAGAATATTTTTTTTCAAAATTAAACACTTGAAAAGTTGCAAACGTACCCTAAAATGGAATCAATTTTAAAATATTGGGGGTCAAAATAATATTTTAACTTTTTTTTTTTTAAAAAAAAAGATACTGAGGGTATTTTAGTCATTTTTCTTCACTCGTTTTTCCTTTCCCCAGTTGGAGGTGCGGTTGGAGAAATTTCAACTTTGTTGACGCTCCATCCGGTTCTCATTTTGCTTCCATCGGCCATTGGTTCATCTCAAATTTCTCTCCCAAGACTGACAGCGACGGCTCCGCCGTGAGTTGCCGGAATCTTCGGATGCTCCGGCCACCCGCATTCTGCTTCCGCTACACGATTAACGGCCGCCGGCCGGTGCTGATTCGCCGTTGTTGTGTTACTATTTCATCTAGGTCCGTTCCTCGGCCTTCATTTCCACCTTTCTATGTTCGGTACATTTTACTTTCACCTGCTTGCTTTTCTTTTTTATTCCGTTTCTCTCTCTCTCTCTTCAATTGTCACTCGGACACGCTTTATTCCACTCGTAAAGCTTCCTCGTCTTCTCCAATTTACTCTGAAGCTACGCCTTGAATCCTTCTCTGTGATTCCGGTTTTGGATTGAAGTTCATGTAATCATGTTTGCCGTAGCTACTTTTTTTCATCTCGGAGGAATCCTTGTAATATCGTTGCTTAGCTGATCTTTCATCTCGGAGGAAACCGCGGAGTATTGTTTCATTCTTGATGGTTTAATTGTCCAGTGGCCGCTTGTAATTAGTTAATTCTGAGGTTTTCGTTGGAAATTGCTGCATTCGAAGTTTGCTTTGAGTCGAAGTAAAACAATGAGTTCCAGTGTGCAATTATTTGCGAGATAGGATTTTAATATTCTTGCTTAACTGGGGATTTGATGAAGATCAGCTAACCGTTAGAATTGTATATTAGCGCCGTTGCGTAAAACTTCTAACCGCACAATATTCCGCGTGCATTTTGATACGTACATTGTGAATAGTATCTATTTCGGAGTTTTTCAGTTTTGGACCATTATTTAATATATTGTGGTTGTTTTCTTAAAGTGCACGAGGCTTGAAGACGACGAAAAGCGCAGCAGAGTAGTGCAGAGGCTTGGGATCAGACCGAAACCGCAGGAAAGAAGAAGGGAAAAGGGAAATTCTGAAAAACGACGGCGTTTTGAAGATCGCATCCATTTCTCGAGCAAGTAG

mRNA sequence

ATGGTTAAATTTTTTTCTATAAAATTTGAAAATAATCTTCAAATTAACAATCATTGGAGGTGCGGTTGGAGAAATTTCAACTTTGTTGACGCTCCATCCGGTTCTCATTTTGCTTCCATCGGCCATTGGTTCATCTCAAATTTCTCTCCCAAGACTGACAGCGACGGCTCCGCCGTGAGTTGCCGGAATCTTCGGATGCTCCGGCCACCCGCATTCTGCTTCCGCTACACGATTAACGGCCGCCGGCCGGTGCTGATTCGCCGTTGTTGTGTTACTATTTCATCTAGGTCCGTTCCTCGGCCTTCATTTCCACCTTTCTATTGCACGAGGCTTGAAGACGACGAAAAGCGCAGCAGAGTAGTGCAGAGGCTTGGGATCAGACCGAAACCGCAGGAAAGAAGAAGGGAAAAGGGAAATTCTGAAAAACGACGGCGTTTTGAAGATCGCATCCATTTCTCGAGCAAGTAG

Coding sequence (CDS)

ATGGTTAAATTTTTTTCTATAAAATTTGAAAATAATCTTCAAATTAACAATCATTGGAGGTGCGGTTGGAGAAATTTCAACTTTGTTGACGCTCCATCCGGTTCTCATTTTGCTTCCATCGGCCATTGGTTCATCTCAAATTTCTCTCCCAAGACTGACAGCGACGGCTCCGCCGTGAGTTGCCGGAATCTTCGGATGCTCCGGCCACCCGCATTCTGCTTCCGCTACACGATTAACGGCCGCCGGCCGGTGCTGATTCGCCGTTGTTGTGTTACTATTTCATCTAGGTCCGTTCCTCGGCCTTCATTTCCACCTTTCTATTGCACGAGGCTTGAAGACGACGAAAAGCGCAGCAGAGTAGTGCAGAGGCTTGGGATCAGACCGAAACCGCAGGAAAGAAGAAGGGAAAAGGGAAATTCTGAAAAACGACGGCGTTTTGAAGATCGCATCCATTTCTCGAGCAAGTAG

Protein sequence

MVKFFSIKFENNLQINNHWRCGWRNFNFVDAPSGSHFASIGHWFISNFSPKTDSDGSAVSCRNLRMLRPPAFCFRYTINGRRPVLIRRCCVTISSRSVPRPSFPPFYCTRLEDDEKRSRVVQRLGIRPKPQERRREKGNSEKRRRFEDRIHFSSK
Homology
[Close]
BLAST of Lcy05g013900 vs. NCBI nr
Match: KAG7011731.1 (hypothetical protein SDJN02_26637, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 57/94 (60.64%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 19  WRCGW-RNFNFVDAPSG-SHF---ASIGHWFISNFSPKTDSDGSAVSCRNLRMLRPPAFC 78
           WRCGW RN NF DAPS  SH    A+            TDSDGS VS RNLR L  PAF 
Sbjct: 12  WRCGWRRNLNF-DAPSSDSHLVPPATDSSQIYPLRETDTDSDGSTVSSRNLRPLWSPAFS 71

Query: 79  FRYTINGRRPVLIRRCCVTISSRSVPRPSFPPFY 108
           F +TI GR PVL RRCCVT+SSRS+PR SFP FY
Sbjct: 72  FFFTIYGRWPVLSRRCCVTVSSRSIPRLSFPHFY 104

[Close]
BLAST of Lcy05g013900 vs. NCBI nr
Match: KAG6572066.1 (hypothetical protein SDJN03_28794, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 55/92 (59.78%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 21  CGW-RNFNFVDAPSG-SHF---ASIGHWFISNFSPKTDSDGSAVSCRNLRMLRPPAFCFR 80
           CGW RN NF DAPS  SH    A+            TDSDGS VS RNLR L  PAF F 
Sbjct: 52  CGWRRNLNF-DAPSSDSHLVPPATDSSQIYPLRETDTDSDGSTVSSRNLRPLWSPAFSFF 111

Query: 81  YTINGRRPVLIRRCCVTISSRSVPRPSFPPFY 108
           +TI GR PVL RRCCVT+SSRS+PR SFP FY
Sbjct: 112 FTIYGRWPVLSRRCCVTVSSRSIPRLSFPHFY 142

The following BLAST results are available for this feature:
BLAST of Lcy05g013900 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g013900 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g013900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011731.11.5e-1660.64hypothetical protein SDJN02_26637, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572066.11.0e-1459.78hypothetical protein SDJN03_28794, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g013900 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g013900.1Lcy05g013900.1mRNA