Lcy05g008640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g008640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosome biogenesis NEP1-like protein
Location	Chr05: 8753861 .. 8754988 (+)
RNA-Seq Expression	Lcy05g008640
Synteny	Lcy05g008640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAATGGCTTTCAGACACTCTCTCACAGTGAGCCCCGTCGCTTCAATTCTCTCTTCTTTTCTTCTGTTTTTGTATGAATATTATTTATTAATATATATATATATATATATATATATATGGGCATGCAGAACGTTTGCAGATCAATGCTCGTCGGAACTAGGATCGACGGGAAACGTCTAGCGTCGTCTACCACCGCTCAGGCCGCCACGCACTCTCATGCTGCTGCTGCTTCTTCTTCTTCTAAGTTAATAAACAAAACCATACCCATTGTATAATATTTATGGTCAATTTAATTATATCTATACTTTAACAGGAACAGCGAGTACATGAAGGGCGAGTATGCCCCAATCTACATTGTGTTTGGATTGGTGGCGGTTGCCGTGTCGATCGCAACCCACACGGCGAAGCAGCAGCTGATGCATTCGCCGGTGGTCAACCTGAGCAAGAAGAAGAGGGAGAACATTTCGGAGGTGGATGATCCCGACACCGTGATCTCTTCCGCCGACAAGTTCGTCAACAAATCCTTTCTTAGGAAGGTGGCCCACATCCAGGATGACACCAAAACGCTAAAGGATCCCGTCCACCCGGATCCTTTTACCCGGTTAATTCAATTCTCTCATCAATAAATATCATTCTCAATTTCAAATTGTTATTATAATCATAATTTAATATAATATGTATATGTCGTTGCTTGCTTGCTTTGCAGGCCACGTAATGCCGAAACTCTGAAAACTGCTGGAGTGGATCCTACCCGCCGTTAGGACATAGATCGGAGATATTACTCAATGAGACTGTCACACCAAAGCTATTAGTTTTGCACCGTTGGATACAAGAGAGAAATTGTAAAAGTACACCCATTTTGTATCCAACGAATTAAAAAGACAATACGTTGTGATAGGTCTCGTAGAATAATTTGTCTTTTTTATTGTGTGTTTTCCGTTGTTGGTTATGTTTGATTTCTGATTTGCACCAATGTGTATGTATATAATTGGCCCTTCTGGTTTTTGGTTGTGCTTCCCTTCCTTTTCTGGTATGAGGTGAAGTAACTACTGTCTACTAGACATGTGGCCCTCGTTTAATTAATTTTTTTTTTTCATTTTTACATATAATAAAAGTCATTGGATA

mRNA sequence

GAAGAAATGGCTTTCAGACACTCTCTCACAAACGTTTGCAGATCAATGCTCGTCGGAACTAGGATCGACGGGAAACGTCTAGCGTCGTCTACCACCGCTCAGGCCGCCACGCACTCTCATGCTGCTGCTGCTTCTTCTTCTTCTAAGAACAGCGAGTACATGAAGGGCGAGTATGCCCCAATCTACATTGTGTTTGGATTGGTGGCGGTTGCCGTGTCGATCGCAACCCACACGGCGAAGCAGCAGCTGATGCATTCGCCGGTGGTCAACCTGAGCAAGAAGAAGAGGGAGAACATTTCGGAGGTGGATGATCCCGACACCGTGATCTCTTCCGCCGACAAGTTCGTCAACAAATCCTTTCTTAGGAAGGTGGCCCACATCCAGGATGACACCAAAACGCTAAAGGATCCCGTCCACCCGGATCCTTTTACCCGGCCACGTAATGCCGAAACTCTGAAAACTGCTGGAGTGGATCCTACCCGCCGTTAGGACATAGATCGGAGATATTACTCAATGAGACTGTCACACCAAAGCTATTAGTTTTGCACCGTTGGATACAAGAGAGAAATTGTAAAAGTACACCCATTTTGTATCCAACGAATTAAAAAGACAATACGTTGTGATAGGTCTCGTAGAATAATTTGTCTTTTTTATTGTGTGTTTTCCGTTGTTGGTTATGTTTGATTTCTGATTTGCACCAATGTGTATGTATATAATTGGCCCTTCTGGTTTTTGGTTGTGCTTCCCTTCCTTTTCTGGTATGAGGTGAAGTAACTACTGTCTACTAGACATGTGGCCCTCGTTTAATTAATTTTTTTTTTTCATTTTTACATATAATAAAAGTCATTGGATA

Coding sequence (CDS)

ATGGCTTTCAGACACTCTCTCACAAACGTTTGCAGATCAATGCTCGTCGGAACTAGGATCGACGGGAAACGTCTAGCGTCGTCTACCACCGCTCAGGCCGCCACGCACTCTCATGCTGCTGCTGCTTCTTCTTCTTCTAAGAACAGCGAGTACATGAAGGGCGAGTATGCCCCAATCTACATTGTGTTTGGATTGGTGGCGGTTGCCGTGTCGATCGCAACCCACACGGCGAAGCAGCAGCTGATGCATTCGCCGGTGGTCAACCTGAGCAAGAAGAAGAGGGAGAACATTTCGGAGGTGGATGATCCCGACACCGTGATCTCTTCCGCCGACAAGTTCGTCAACAAATCCTTTCTTAGGAAGGTGGCCCACATCCAGGATGACACCAAAACGCTAAAGGATCCCGTCCACCCGGATCCTTTTACCCGGCCACGTAATGCCGAAACTCTGAAAACTGCTGGAGTGGATCCTACCCGCCGTTAG

Protein sequence

MAFRHSLTNVCRSMLVGTRIDGKRLASSTTAQAATHSHAAAASSSSKNSEYMKGEYAPIYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

Homology

[Close]

BLAST of Lcy05g008640 vs. ExPASy TrEMBL
Match: A0A1S3CBE5 (uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.0e-55
Identity = 125/162 (77.16%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 3   FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAASS--SSKNSEYMKGEYAP 62
           FR SL N + +SMLVGTRI G +R ASSTTA +A  S ++++SS   S  SEYMKGEYAP
Sbjct: 4   FRTSLANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAP 63

Query: 63  IYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSF 122
           IYIV G+VAV VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSF
Sbjct: 64  IYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSF 123

Query: 123 LRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           LRKVAHIQDDTKTL DPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 124 LRKVAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Lcy05g008640 vs. ExPASy TrEMBL
Match: A0A5D3DLZ1 (Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001820 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.8e-55
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 14  MLVGTRIDG-KRLASSTTAQAATHSHAAAASSS---SKNSEYMKGEYAPIYIVFGLVAVA 73
           MLVGTRI G +R ASSTTA +A  S ++++SSS   S  SEYMKGEYAPIYIV G+VAV 
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAVV 60

Query: 74  VSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQDDT 133
           VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSFLRKVAHIQDDT
Sbjct: 61  VSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDT 120

Query: 134 KTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           KTL DPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]

BLAST of Lcy05g008640 vs. ExPASy TrEMBL
Match: A0A0A0KC39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.4e-54
Identity = 122/165 (73.94%), Postives = 138/165 (83.64%), Query Frame = 0


Query: 3   FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAASSSSKN-----SEYMKGE 62
           FR SL N + +SMLV TRI G +R +SSTT  +A +   A++ SSS N     SEYMKGE
Sbjct: 4   FRTSLANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGE 63

Query: 63  YAPIYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVN 122
           YAPIYIV G+VAV VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+N
Sbjct: 64  YAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFIN 123

Query: 123 KSFLRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           KSFLRKVAHIQ DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 124 KSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Lcy05g008640 vs. ExPASy TrEMBL
Match: E5GB52 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.2e-53
Identity = 119/150 (79.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 14  MLVGTRIDG-KRLASSTTAQAATHSHAAAASS--SSKNSEYMKGEYAPIYIVFGLVAVAV 73
           MLVGTRI G +R ASSTTA +A  S ++++SS   S  SEYMKGEYAPIYIV G+VAV V
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 74  SIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQDDTK 133
           SIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSFLRKVAHIQDDTK
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 134 TLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           TL DPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Lcy05g008640 vs. ExPASy TrEMBL
Match: A0A6J1D5I0 (uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017496 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 121/161 (75.16%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MAFRHSLTNVCRSMLVG--TRIDGKR-LASSTTAQAATHSHAAAASSSSKNSEYMKGEYA 60
           MAFR   T + +SMLVG  +RI+GKR  ASSTT          A+SSSS  SEYMKGEYA
Sbjct: 1   MAFRR--TKLWKSMLVGIPSRIEGKRCFASSTT----------ASSSSSSKSEYMKGEYA 60

Query: 61  PIYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKS 120
           PIYIV G+V VAV+I THTAKQQL+HSPVV LSKKKRE+I EVDDPDTVI+SADKFVNKS
Sbjct: 61  PIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKS 120

Query: 121 FLRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPT 159
           FLRKVAHIQD  KTL+DP HPDPFTRPRNAETLKTAGVDPT
Sbjct: 121 FLRKVAHIQDHNKTLRDPQHPDPFTRPRNAETLKTAGVDPT 149

[Close]

BLAST of Lcy05g008640 vs. NCBI nr
Match: XP_038906484.1 (uncharacterized protein LOC120092464 [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 9.7e-56
Identity = 127/168 (75.60%), Postives = 143/168 (85.12%), Query Frame = 0


Query: 3   FRHSLTN-VCRSMLVGTRIDGK-RLASSTTAQAATHSHAAAASSS--------SKNSEYM 62
           F  SLTN V ++MLVG+RI GK RLASSTTA AA +   A++SSS        S +SEYM
Sbjct: 4   FTTSLTNKVWKAMLVGSRIQGKRRLASSTTAPAANNIQKASSSSSSSSSSKGGSSSSEYM 63

Query: 63  KGEYAPIYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADK 122
           KGEYAPIYIV G+VAVAVSI THTAKQQL+HSPVVN SKKKRE+I EVDDPDT+I+SA+K
Sbjct: 64  KGEYAPIYIVVGMVAVAVSIGTHTAKQQLLHSPVVNFSKKKRESIPEVDDPDTIINSANK 123

Query: 123 FVNKSFLRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           F+NKSFLRKVAHIQ+DTKTL DPVHP+PFTRPRNAETLKTAGVDPTRR
Sbjct: 124 FINKSFLRKVAHIQEDTKTLPDPVHPNPFTRPRNAETLKTAGVDPTRR 171

[Close]

BLAST of Lcy05g008640 vs. NCBI nr
Match: XP_008459927.1 (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 6.3e-55
Identity = 125/162 (77.16%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 3   FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAASS--SSKNSEYMKGEYAP 62
           FR SL N + +SMLVGTRI G +R ASSTTA +A  S ++++SS   S  SEYMKGEYAP
Sbjct: 4   FRTSLANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAP 63

Query: 63  IYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSF 122
           IYIV G+VAV VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSF
Sbjct: 64  IYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSF 123

Query: 123 LRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           LRKVAHIQDDTKTL DPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 124 LRKVAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Lcy05g008640 vs. NCBI nr
Match: KAA0039866.1 (putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24635.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 14  MLVGTRIDG-KRLASSTTAQAATHSHAAAASSS---SKNSEYMKGEYAPIYIVFGLVAVA 73
           MLVGTRI G +R ASSTTA +A  S ++++SSS   S  SEYMKGEYAPIYIV G+VAV 
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSSKGGSGESEYMKGEYAPIYIVMGMVAVV 60

Query: 74  VSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQDDT 133
           VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSFLRKVAHIQDDT
Sbjct: 61  VSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDT 120

Query: 134 KTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           KTL DPVHPDPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 151

[Close]

BLAST of Lcy05g008640 vs. NCBI nr
Match: XP_004140656.2 (uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical protein Csa_005593 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 6.9e-54
Identity = 122/165 (73.94%), Postives = 138/165 (83.64%), Query Frame = 0


Query: 3   FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAASSSSKN-----SEYMKGE 62
           FR SL N + +SMLV TRI G +R +SSTT  +A +   A++ SSS N     SEYMKGE
Sbjct: 4   FRTSLANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGE 63

Query: 63  YAPIYIVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVN 122
           YAPIYIV G+VAV VSIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+N
Sbjct: 64  YAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFIN 123

Query: 123 KSFLRKVAHIQDDTKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           KSFLRKVAHIQ DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 124 KSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Lcy05g008640 vs. NCBI nr
Match: ADN33694.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 218.4 bits (555), Expect = 4.5e-53
Identity = 119/150 (79.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 14  MLVGTRIDG-KRLASSTTAQAATHSHAAAASS--SSKNSEYMKGEYAPIYIVFGLVAVAV 73
           MLVGTRI G +R ASSTTA +A  S ++++SS   S  SEYMKGEYAPIYIV G+VAV V
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 74  SIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQDDTK 133
           SIATHTAKQQL+HSP+VN SKKKRE+I EV+DPDTVI+SADKF+NKSFLRKVAHIQDDTK
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 134 TLKDPVHPDPFTRPRNAETLKTAGVDPTRR 161
           TL DPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Lcy05g008640 vs. TAIR 10
Match: AT1G63060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 8.2e-29
Identity = 73/158 (46.20%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 1   MAFRHSLTNVCRSMLVGTRIDGKRLASSTTAQAATHSHAAAASSSSKNSEYMKGEYAPIY 60
           MAFR  +T+  R   VG +  G R  ++T A  A  ++         N   + GE+AP+ 
Sbjct: 1   MAFR--ITSQLRP--VGNQFGGSRRFATTVADGAKQTY---------NKFSIMGEFAPVA 60

Query: 61  IVFGLVAVAVSIATHTAKQQLMHSPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLR 120
           I+ G V +AV +A H+ KQQLMH+P ++  K +R  ++EVDDP+  +SSADKF+NKS+LR
Sbjct: 61  IIGGFVGLAVLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVSSADKFINKSWLR 120

Query: 121 KVAHIQDDTKT-LKDPVHPDPFTRPRNAETLKTAGVDP 158
           KV  IQD +K  L DP  P+PFT PRNAETL + GV P
Sbjct: 121 KVGQIQDKSKAILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Lcy05g008640 vs. TAIR 10
Match: AT5G07330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 7.7e-19
Identity = 48/136 (35.29%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 27  SSTTAQAATHSHAA---AASSSSKNSEYMKGEYAPIYIVFGLVAVAVSIATHTAKQQLMH 86
           ++T  ++  +S AA       ++  +   KG++ P+Y+  GL++++V+   +TA   L  
Sbjct: 22  ATTVPRSKAYSTAATEYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFGVYTAYLHLHE 81

Query: 87  SPVVNLSKKKRENISEVDDPDTVISSADKFVNKSFLRKVAHIQ--DDTKTLKDPVHPDPF 146
           +P V ++KK RE + E++DPD V++ AD+F N+S+ RK+AH+Q  D    + DP+  D F
Sbjct: 82  NPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDKQDVISDPIRKDQF 141

Query: 147 TRPRNAETLKTAGVDP 158
                A TLK  GVDP
Sbjct: 142 AHKPRALTLKDVGVDP 157

The following BLAST results are available for this feature:

BLAST of Lcy05g008640 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g008640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBE5	3.0e-55	77.16	uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=...	[more]
A0A5D3DLZ1	6.8e-55	80.13	Putative Ribosome biogenesis protein NEP1-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KC39	3.4e-54	73.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1	[more]
E5GB52	2.2e-53	79.33	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1D5I0	1.2e-51	75.16	uncharacterized protein LOC111017496 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy05g008640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906484.1	9.7e-56	75.60	uncharacterized protein LOC120092464 [Benincasa hispida]	[more]
XP_008459927.1	6.3e-55	77.16	PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]	[more]
KAA0039866.1	1.4e-54	80.13	putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa] >TYK24...	[more]
XP_004140656.2	6.9e-54	73.94	uncharacterized protein LOC101206372 [Cucumis sativus] >KGN46404.1 hypothetical ...	[more]
ADN33694.1	4.5e-53	79.33	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of Lcy05g008640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63060.1	8.2e-29	46.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G07330.1	7.7e-19	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..160
None	No IPR available	PANTHER	PTHR33919:SF9	RIBOSOME BIOGENESIS NEP1-LIKE PROTEIN	coord: 1..158
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g008640.1	Lcy05g008640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane