Lcy05g007000 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g007000
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein
LocationChr05: 6665821 .. 6666321 (+)
RNA-Seq ExpressionLcy05g007000
SyntenyLcy05g007000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA

mRNA sequence

ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA

Coding sequence (CDS)

ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA

Protein sequence

MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV
Homology
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match: A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.0e-55
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           MGR KIL+ S+ LFL LITD+E QWQPP VAPRPLCASQI LANYACA LPY+ + PPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
           PS  LS++ + QGS                P H H H HHHRH HKIPL+P+EENCCKWV
Sbjct: 61  PSSSLSNNQDSQGS----------------PVHGHHHGHHHRHHHKIPLTPIEENCCKWV 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
           QQ+DSEC+C LLSRLP FL RP HNFSVT+GGSC+ATY C GGMK+
Sbjct: 121 QQVDSECVCELLSRLPAFLKRPIHNFSVTIGGSCNATYWC-GGMKI 149

BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match: A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 0

Query: 23  GQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSH 82
           GQWQPP VAPRPLCASQIALANYACA LPYS +LPPPPPS  LS +H+ QGS        
Sbjct: 83  GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGS-------- 142

Query: 83  NHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRP 142
                   P H H H HHHRH HKIPLSP+EENCCKWVQQ+DSEC+C LLSRLP FL RP
Sbjct: 143 --------PVHTHHHGHHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRP 202

Query: 143 QHNFSVTVGG--SCDATYSCGGGMKV 167
            HNFSV +GG  SC+ATYSC GGMK+
Sbjct: 203 IHNFSVIIGGSLSCNATYSC-GGMKI 211

BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match: A0A068U4W8 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00016024001 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.3e-28
Identity = 79/179 (44.13%), Postives = 100/179 (55.87%), Query Frame = 0

Query: 1   MGRSKILLFSIAL-FLALITDTEGQW----QPPEVAPRPLCASQIALANYACAMLPYSTV 60
           M   KIL  ++ L FL +   T GQW     PP +APRPLCASQ ALA++ACA LPY   
Sbjct: 1   MDEPKILKLAVFLVFLVVQPRTNGQWIPRPIPPPIAPRPLCASQFALASHACAFLPYVPS 60

Query: 61  LPPPPPSPVLSDSHERQGSHPSHRPSHNHRHEHHHP-SHNHRHEHHHRHQHK-------- 120
             P PP P L + H+      SH   H H HEH H   H H HEH H H+HK        
Sbjct: 61  PSPSPPPPSLIERHDSLKHQLSHDHKHEHEHEHEHQHEHEHEHEHEHEHEHKDGHRHEHR 120

Query: 121 -----IPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSC 161
                  ++P+E +CC W+  +DSEC+C LL  LP FL RP H ++V+V  SC+ T+ C
Sbjct: 121 HRRHGHTMTPVEASCCHWLGTIDSECVCDLLVYLPPFLSRPVHEYTVSVKDSCNVTFQC 179

BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match: A0A1Q3CRD9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 9.6e-28
Identity = 77/155 (49.68%), Postives = 94/155 (60.65%), Query Frame = 0

Query: 9   FSIALFLALITDTEGQWQP--PEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLS 68
           F I +FLAL+   EGQ +P  P   PRPLC SQ++LANYAC  LP+S   PP PPSP   
Sbjct: 10  FLIMVFLALLHRLEGQPRPVLPIPPPRPLCPSQVSLANYACLALPFSPGAPPTPPSPDDP 69

Query: 69  DSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSE 128
           D            P    RH HHH    HRH+HH  HQ     +P EENCC+WV+++D  
Sbjct: 70  DD-----------PDLGGRHHHHH----HRHKHHKHHQ-----TPEEENCCRWVKEVDDV 129

Query: 129 CICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCG 162
           C+C LL RLP FL RP H+++V V  SC+ TYSCG
Sbjct: 130 CVCDLLVRLPAFLARPVHDYTVVVSQSCNVTYSCG 144

BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match: A0A2P5CXK7 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_115260 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           M R K L  +  LFL L+   EG+     V PRP+CASQ ALANYAC+M+PYS + PP P
Sbjct: 1   MERVKTLTQTFLLFLLLVLKIEGKLTGAAVTPRPVCASQYALANYACSMIPYSPLPPPAP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
            +P L  +H            H+ RH H H  H HRH HH   +        EE+CC+W+
Sbjct: 61  STPSLDANH------------HHGRHHHGHGGHRHRHRHHGTQE--------EEDCCRWL 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGG 163
            ++D++C+C +L  LP FL RP H +++ VG +C+ TY+CGG
Sbjct: 121 YEIDTDCVCDMLVHLPDFLSRPVHEYTLVVGDTCNVTYTCGG 142

BLAST of Lcy05g007000 vs. NCBI nr
Match: XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           MGR KIL+FS+ LFLALITDTEGQWQPP+VAPRPLCASQIALANYACAMLPYSTVLPPPP
Sbjct: 1   MGRFKILIFSVTLFLALITDTEGQWQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
           PS  LSD+HE QGS     P+  HR       H H+H HHH HQ KIPLSP+EENCCKWV
Sbjct: 61  PSLSLSDNHESQGS-----PNQRHR-------HTHQHGHHHGHQQKIPLSPMEENCCKWV 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
           QQLDSECICGLLSRLP FL RPQHNFSVTVGGSCDATYSCGGG+K+
Sbjct: 121 QQLDSECICGLLSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI 154

BLAST of Lcy05g007000 vs. NCBI nr
Match: XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           MGR KIL+ S+ LFL LITD+E QWQPP VAPRPLCASQI LANYACA LPY+ + PPPP
Sbjct: 1   MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
           PS  LS++ + QGS                P H H H HHHRH HKIPL+P+EENCCKWV
Sbjct: 61  PSSSLSNNQDSQGS----------------PVHGHHHGHHHRHHHKIPLTPIEENCCKWV 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
           QQ+DSEC+C LLSRLP FL RP HNFSVT+GGSC+ATY C GGMK+
Sbjct: 121 QQVDSECVCELLSRLPAFLKRPIHNFSVTIGGSCNATYWC-GGMKI 149

BLAST of Lcy05g007000 vs. NCBI nr
Match: XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-49
Identity = 107/163 (65.64%), Postives = 120/163 (73.62%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           MGR KILLF++ LFLALI DTE QWQPP+VAPRP C SQIALAN ACAMLPYST +   P
Sbjct: 1   MGRFKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYST-MALSP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
           PS  LSD+HE  G  P+HR               H H H H HQH+I LSP+EENCCKWV
Sbjct: 61  PSVSLSDNHESHGPPPNHR---------------HLHTHWHGHQHQISLSPMEENCCKWV 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGG 164
           QQLDS+C+C LLSRLP FL RPQH  S +VGGSC+AT+SCGGG
Sbjct: 121 QQLDSQCLCRLLSRLPAFLERPQHKISFSVGGSCNATFSCGGG 147

BLAST of Lcy05g007000 vs. NCBI nr
Match: KAA0057606.1 (hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK20987.1 hypothetical protein E5676_scaffold328G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 5.9e-48
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 0

Query: 23  GQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSH 82
           GQWQPP VAPRPLCASQIALANYACA LPYS +LPPPPPS  LS +H+ QGS        
Sbjct: 83  GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGS-------- 142

Query: 83  NHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRP 142
                   P H H H HHHRH HKIPLSP+EENCCKWVQQ+DSEC+C LLSRLP FL RP
Sbjct: 143 --------PVHTHHHGHHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRP 202

Query: 143 QHNFSVTVGG--SCDATYSCGGGMKV 167
            HNFSV +GG  SC+ATYSC GGMK+
Sbjct: 203 IHNFSVIIGGSLSCNATYSC-GGMKI 211

BLAST of Lcy05g007000 vs. NCBI nr
Match: KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 94/153 (61.44%), Postives = 108/153 (70.59%), Query Frame = 0

Query: 1   MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
           M R KIL+F++ LFLALI DTE QWQPP+VAPRP C SQIALAN ACAMLPYST +   P
Sbjct: 1   MERFKILIFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYST-MALSP 60

Query: 61  PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
           PS  LSD+HE  G  P+H+               H   H H HQH+I LSP+EENCCKWV
Sbjct: 61  PSLSLSDNHESHGLPPNHK---------------HLRTHWHGHQHQISLSPMEENCCKWV 120

Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGS 154
           QQLDS+C+C LLSRLP FL RPQH  S +VGG+
Sbjct: 121 QQLDSQCLCRLLSRLPAFLERPQHKISFSVGGN 137

BLAST of Lcy05g007000 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20
Identity = 75/243 (30.86%), Postives = 103/243 (42.39%), Query Frame = 0

Query: 7   LLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPP----PPPS 66
           L  ++ L LAL + T GQ       PRPLCASQ ALANYAC+ LP  TV PP    PPP+
Sbjct: 4   LFIAVTLALALSSFTRGQRVIQIPPPRPLCASQYALANYACSRLPMHTVPPPAPITPPPA 63

Query: 67  PVL-----------------------------------------SDSHERQG-------- 126
           P+                                           D H+           
Sbjct: 64  PIAPPPPEHDHHDHDHDHDHDHDHDDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRD 123

Query: 127 -------------SHPSHRPSHNHRHEHHHPSHNHRHE--------------------HH 163
                        +H  H  +H+H ++H+  +H+H H+                    HH
Sbjct: 124 RDRDRDRDRDHDRAHDDHDHNHDHDNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHHRHH 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAN77.0e-5566.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1[more]
A0A5A7UTY52.9e-4869.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A068U4W87.3e-2844.13Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00016024001 PE=4 ... [more]
A0A1Q3CRD99.6e-2849.68Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4... [more]
A0A2P5CXK76.2e-2743.21Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain ... [more]
Match NameE-valueIdentityDescription
XP_038899044.17.4e-6779.52uncharacterized protein LOC120086453 [Benincasa hispida][more]
XP_031744964.11.4e-5466.27uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical ... [more]
XP_023548911.12.4e-4965.64uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo][more]
KAA0057606.15.9e-4869.18hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK2098... [more]
KAG7014427.12.0e-4061.44hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT3G63095.11.9e-2030.86Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..105
NoneNo IPR availablePANTHERPTHR34377TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEINcoord: 11..163
NoneNo IPR availablePANTHERPTHR34377:SF6SUBFAMILY NOT NAMEDcoord: 11..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g007000.1Lcy05g007000.1mRNA