Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA
mRNA sequence
ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA
Coding sequence (CDS)
ATGGGGAGATCCAAGATCCTTTTATTTTCAATAGCATTGTTTTTGGCTCTGATTACCGACACAGAGGGTCAATGGCAGCCACCTGAAGTTGCTCCTCGTCCACTCTGCGCCTCCCAGATAGCACTAGCAAACTATGCCTGTGCAATGTTGCCTTACTCCACAGTCCTGCCACCTCCGCCTCCATCACCGGTACTCTCTGATAGCCATGAACGCCAAGGTTCTCACCCCAGCCACCGCCCTAGCCACAACCATCGACACGAACACCACCACCCTAGCCACAACCATCGGCACGAACACCACCACAGACACCAGCACAAGATTCCGCTATCGCCATTGGAGGAGAATTGTTGCAAATGGGTGCAGCAGTTGGATAGCGAATGCATATGTGGGCTGTTATCCCGCCTGCCTGTATTTCTAGGGCGGCCTCAGCATAACTTTTCTGTTACTGTTGGTGGTTCTTGTGATGCTACATACTCTTGCGGAGGAGGAATGAAAGTCTAA
Protein sequence
MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV
Homology
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match:
A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 7.0e-55
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
MGR KIL+ S+ LFL LITD+E QWQPP VAPRPLCASQI LANYACA LPY+ + PPPP
Sbjct: 1 MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
PS LS++ + QGS P H H H HHHRH HKIPL+P+EENCCKWV
Sbjct: 61 PSSSLSNNQDSQGS----------------PVHGHHHGHHHRHHHKIPLTPIEENCCKWV 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
QQ+DSEC+C LLSRLP FL RP HNFSVT+GGSC+ATY C GGMK+
Sbjct: 121 QQVDSECVCELLSRLPAFLKRPIHNFSVTIGGSCNATYWC-GGMKI 149
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match:
A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1)
HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 0
Query: 23 GQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSH 82
GQWQPP VAPRPLCASQIALANYACA LPYS +LPPPPPS LS +H+ QGS
Sbjct: 83 GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGS-------- 142
Query: 83 NHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRP 142
P H H H HHHRH HKIPLSP+EENCCKWVQQ+DSEC+C LLSRLP FL RP
Sbjct: 143 --------PVHTHHHGHHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRP 202
Query: 143 QHNFSVTVGG--SCDATYSCGGGMKV 167
HNFSV +GG SC+ATYSC GGMK+
Sbjct: 203 IHNFSVIIGGSLSCNATYSC-GGMKI 211
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match:
A0A068U4W8 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00016024001 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 7.3e-28
Identity = 79/179 (44.13%), Postives = 100/179 (55.87%), Query Frame = 0
Query: 1 MGRSKILLFSIAL-FLALITDTEGQW----QPPEVAPRPLCASQIALANYACAMLPYSTV 60
M KIL ++ L FL + T GQW PP +APRPLCASQ ALA++ACA LPY
Sbjct: 1 MDEPKILKLAVFLVFLVVQPRTNGQWIPRPIPPPIAPRPLCASQFALASHACAFLPYVPS 60
Query: 61 LPPPPPSPVLSDSHERQGSHPSHRPSHNHRHEHHHP-SHNHRHEHHHRHQHK-------- 120
P PP P L + H+ SH H H HEH H H H HEH H H+HK
Sbjct: 61 PSPSPPPPSLIERHDSLKHQLSHDHKHEHEHEHEHQHEHEHEHEHEHEHEHKDGHRHEHR 120
Query: 121 -----IPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSC 161
++P+E +CC W+ +DSEC+C LL LP FL RP H ++V+V SC+ T+ C
Sbjct: 121 HRRHGHTMTPVEASCCHWLGTIDSECVCDLLVYLPPFLSRPVHEYTVSVKDSCNVTFQC 179
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match:
A0A1Q3CRD9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 9.6e-28
Identity = 77/155 (49.68%), Postives = 94/155 (60.65%), Query Frame = 0
Query: 9 FSIALFLALITDTEGQWQP--PEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLS 68
F I +FLAL+ EGQ +P P PRPLC SQ++LANYAC LP+S PP PPSP
Sbjct: 10 FLIMVFLALLHRLEGQPRPVLPIPPPRPLCPSQVSLANYACLALPFSPGAPPTPPSPDDP 69
Query: 69 DSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSE 128
D P RH HHH HRH+HH HQ +P EENCC+WV+++D
Sbjct: 70 DD-----------PDLGGRHHHHH----HRHKHHKHHQ-----TPEEENCCRWVKEVDDV 129
Query: 129 CICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCG 162
C+C LL RLP FL RP H+++V V SC+ TYSCG
Sbjct: 130 CVCDLLVRLPAFLARPVHDYTVVVSQSCNVTYSCG 144
BLAST of Lcy05g007000 vs. ExPASy TrEMBL
Match:
A0A2P5CXK7 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_115260 PE=4 SV=1)
HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
M R K L + LFL L+ EG+ V PRP+CASQ ALANYAC+M+PYS + PP P
Sbjct: 1 MERVKTLTQTFLLFLLLVLKIEGKLTGAAVTPRPVCASQYALANYACSMIPYSPLPPPAP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
+P L +H H+ RH H H H HRH HH + EE+CC+W+
Sbjct: 61 STPSLDANH------------HHGRHHHGHGGHRHRHRHHGTQE--------EEDCCRWL 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGG 163
++D++C+C +L LP FL RP H +++ VG +C+ TY+CGG
Sbjct: 121 YEIDTDCVCDMLVHLPDFLSRPVHEYTLVVGDTCNVTYTCGG 142
BLAST of Lcy05g007000 vs. NCBI nr
Match:
XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida])
HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
MGR KIL+FS+ LFLALITDTEGQWQPP+VAPRPLCASQIALANYACAMLPYSTVLPPPP
Sbjct: 1 MGRFKILIFSVTLFLALITDTEGQWQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
PS LSD+HE QGS P+ HR H H+H HHH HQ KIPLSP+EENCCKWV
Sbjct: 61 PSLSLSDNHESQGS-----PNQRHR-------HTHQHGHHHGHQQKIPLSPMEENCCKWV 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
QQLDSECICGLLSRLP FL RPQHNFSVTVGGSCDATYSCGGG+K+
Sbjct: 121 QQLDSECICGLLSRLPAFLERPQHNFSVTVGGSCDATYSCGGGIKI 154
BLAST of Lcy05g007000 vs. NCBI nr
Match:
XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus])
HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
MGR KIL+ S+ LFL LITD+E QWQPP VAPRPLCASQI LANYACA LPY+ + PPPP
Sbjct: 1 MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
PS LS++ + QGS P H H H HHHRH HKIPL+P+EENCCKWV
Sbjct: 61 PSSSLSNNQDSQGS----------------PVHGHHHGHHHRHHHKIPLTPIEENCCKWV 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGGMKV 167
QQ+DSEC+C LLSRLP FL RP HNFSVT+GGSC+ATY C GGMK+
Sbjct: 121 QQVDSECVCELLSRLPAFLKRPIHNFSVTIGGSCNATYWC-GGMKI 149
BLAST of Lcy05g007000 vs. NCBI nr
Match:
XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 206.1 bits (523), Expect = 2.4e-49
Identity = 107/163 (65.64%), Postives = 120/163 (73.62%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
MGR KILLF++ LFLALI DTE QWQPP+VAPRP C SQIALAN ACAMLPYST + P
Sbjct: 1 MGRFKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYST-MALSP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
PS LSD+HE G P+HR H H H H HQH+I LSP+EENCCKWV
Sbjct: 61 PSVSLSDNHESHGPPPNHR---------------HLHTHWHGHQHQISLSPMEENCCKWV 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGSCDATYSCGGG 164
QQLDS+C+C LLSRLP FL RPQH S +VGGSC+AT+SCGGG
Sbjct: 121 QQLDSQCLCRLLSRLPAFLERPQHKISFSVGGSCNATFSCGGG 147
BLAST of Lcy05g007000 vs. NCBI nr
Match:
KAA0057606.1 (hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK20987.1 hypothetical protein E5676_scaffold328G00120 [Cucumis melo var. makuwa])
HSP 1 Score: 201.4 bits (511), Expect = 5.9e-48
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 0
Query: 23 GQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPPPSPVLSDSHERQGSHPSHRPSH 82
GQWQPP VAPRPLCASQIALANYACA LPYS +LPPPPPS LS +H+ QGS
Sbjct: 83 GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGS-------- 142
Query: 83 NHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWVQQLDSECICGLLSRLPVFLGRP 142
P H H H HHHRH HKIPLSP+EENCCKWVQQ+DSEC+C LLSRLP FL RP
Sbjct: 143 --------PVHTHHHGHHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRP 202
Query: 143 QHNFSVTVGG--SCDATYSCGGGMKV 167
HNFSV +GG SC+ATYSC GGMK+
Sbjct: 203 IHNFSVIIGGSLSCNATYSC-GGMKI 211
BLAST of Lcy05g007000 vs. NCBI nr
Match:
KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 176.4 bits (446), Expect = 2.0e-40
Identity = 94/153 (61.44%), Postives = 108/153 (70.59%), Query Frame = 0
Query: 1 MGRSKILLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
M R KIL+F++ LFLALI DTE QWQPP+VAPRP C SQIALAN ACAMLPYST + P
Sbjct: 1 MERFKILIFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYST-MALSP 60
Query: 61 PSPVLSDSHERQGSHPSHRPSHNHRHEHHHPSHNHRHEHHHRHQHKIPLSPLEENCCKWV 120
PS LSD+HE G P+H+ H H H HQH+I LSP+EENCCKWV
Sbjct: 61 PSLSLSDNHESHGLPPNHK---------------HLRTHWHGHQHQISLSPMEENCCKWV 120
Query: 121 QQLDSECICGLLSRLPVFLGRPQHNFSVTVGGS 154
QQLDS+C+C LLSRLP FL RPQH S +VGG+
Sbjct: 121 QQLDSQCLCRLLSRLPAFLERPQHKISFSVGGN 137
BLAST of Lcy05g007000 vs. TAIR 10
Match:
AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20
Identity = 75/243 (30.86%), Postives = 103/243 (42.39%), Query Frame = 0
Query: 7 LLFSIALFLALITDTEGQWQPPEVAPRPLCASQIALANYACAMLPYSTVLPP----PPPS 66
L ++ L LAL + T GQ PRPLCASQ ALANYAC+ LP TV PP PPP+
Sbjct: 4 LFIAVTLALALSSFTRGQRVIQIPPPRPLCASQYALANYACSRLPMHTVPPPAPITPPPA 63
Query: 67 PVL-----------------------------------------SDSHERQG-------- 126
P+ D H+
Sbjct: 64 PIAPPPPEHDHHDHDHDHDHDHDHDDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRD 123
Query: 127 -------------SHPSHRPSHNHRHEHHHPSHNHRHE--------------------HH 163
+H H +H+H ++H+ +H+H H+ HH
Sbjct: 124 RDRDRDRDRDHDRAHDDHDHNHDHDNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHHRHH 183
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KAN7 | 7.0e-55 | 66.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1 | [more] |
A0A5A7UTY5 | 2.9e-48 | 69.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A068U4W8 | 7.3e-28 | 44.13 | Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00016024001 PE=4 ... | [more] |
A0A1Q3CRD9 | 9.6e-28 | 49.68 | Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4... | [more] |
A0A2P5CXK7 | 6.2e-27 | 43.21 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain ... | [more] |
Match Name | E-value | Identity | Description | |
XP_038899044.1 | 7.4e-67 | 79.52 | uncharacterized protein LOC120086453 [Benincasa hispida] | [more] |
XP_031744964.1 | 1.4e-54 | 66.27 | uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical ... | [more] |
XP_023548911.1 | 2.4e-49 | 65.64 | uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo] | [more] |
KAA0057606.1 | 5.9e-48 | 69.18 | hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK2098... | [more] |
KAG7014427.1 | 2.0e-40 | 61.44 | hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
AT3G63095.1 | 1.9e-20 | 30.86 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |