Lcy05g006230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g006230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	nuclear transcription factor Y subunit B-1-like
Location	Chr05: 5816331 .. 5817668 (-)
RNA-Seq Expression	Lcy05g006230
Synteny	Lcy05g006230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAGTTATAACCTAAAAAGAGCATTTAGATGGATCAGTCTCACATAGACATCATCAATATATACAAGTGGTAGAGACAAGTTGGGCACTTGAAAGGAGCAACGTGTCTACGTTTTAGAGGATAGAAAAAGCCTCTTTTTTTTCCCTTTTTTTTTCTCCTTTCCCTTTCTTTTTTAGATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAACTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATAGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCCATAATAATAGTAATAATAATCATGATGCATGAGAGAGATAATTGAAGAAATTATTTGTCTCAAGGATTTAGAAAGGAAAAAAGATGCAACTTTCCTCTTTTTCTCTCACTTCTTTCAATTGGGTTATGGTTTTTTTGAGTTTGTTGAGATGGGTTTTTGAGATATCAAACATGATAGGCTCAAATGGGGAAAATTGGGGAAATGGGGTTTTGTTTTTGTTTTTTTGTATTTGATTTTCTGACTTGAAAACAAATATGTTTTTGTGGGGCTTTGTTTGGTTTTTTTTTTTTTTTGGTTCTTGAGTTAACTTTGTGTTTGTTTGTTAGCTTGAGATTTGAGGATGTGTAATACCAAAAACTTTTGGACACATTTAGGGTTTGGTTTGAGATGTATAATTGGATGCTACTACTAATTAATGATCTCTCTCTCTCTCTGTTTGTTGATTTTTTTTTTCTCTTCATTGCATGGGGTTTTATTAAGTATGAGACTTTCAGATGGGTATGTCTAATTTTTGGAGCCTTAAGAAGAATAATGAAGTTTAAAATCATTCTTCTTCATCCTTTCAAAAAAAACTTTGAACTGATCTTCTCTTCCCCCTATAGTGTGCTTCTCTCTGTTTGTTCCCCTAAGAAACTTTCCCAAGTTCTGCTTATGTCATTAAGGATCTCCTTAACTTATTATATGTGTGTGTGTGTAAGAATGAGG

mRNA sequence

AAAAAAAAAAAAAAAGTTATAACCTAAAAAGAGCATTTAGATGGATCAGTCTCACATAGACATCATCAATATATACAAGTGGTAGAGACAAGTTGGGCACTTGAAAGGAGCAACGTGTCTACGTTTTAGAGGATAGAAAAAGCCTCTTTTTTTTCCCTTTTTTTTTCTCCTTTCCCTTTCTTTTTTAGATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAACTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATAGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCCATAATAATAGTAATAATAATCATGATGCATGAGAGAGATAATTGAAGAAATTATTTGTCTCAAGGATTTAGAAAGGAAAAAAGATGCAACTTTCCTCTTTTTCTCTCACTTCTTTCAATTGGGTTATGGTTTTTTTGAGTTTGTTGAGATGGGTTTTTGAGATATCAAACATGATAGGCTCAAATGGGGAAAATTGGGGAAATGGGGTTTTGTTTTTGTTTTTTTGTATTTGATTTTCTGACTTGAAAACAAATATGTTTTTGTGGGGCTTTGTTTGGTTTTTTTTTTTTTTTGGTTCTTGAGTTAACTTTGTGTTTGTTTGTTAGCTTGAGATTTGAGGATGTGTAATACCAAAAACTTTTGGACACATTTAGGGTTTGGTTTGAGATGTATAATTGGATGCTACTACTAATTAATGATCTCTCTCTCTCTCTGTTTGTTGATTTTTTTTTTCTCTTCATTGCATGGGGTTTTATTAAGTATGAGACTTTCAGATGGGTATGTCTAATTTTTGGAGCCTTAAGAAGAATAATGAAGTTTAAAATCATTCTTCTTCATCCTTTCAAAAAAAACTTTGAACTGATCTTCTCTTCCCCCTATAGTGTGCTTCTCTCTGTTTGTTCCCCTAAGAAACTTTCCCAAGTTCTGCTTATGTCATTAAGGATCTCCTTAACTTATTATATGTGTGTGTGTGTAAGAATGAGG

Coding sequence (CDS)

ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCCGCGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCGATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAACTTCGTGACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATAGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCCATAATAATAGTAATAATAATCATGATGCATGA

Protein sequence

MDDNTGKQERLVEFKYDFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA

Homology

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BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.2e-42
Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 42  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEK 101
           ++VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFI+FVTGEASDKCHKEK
Sbjct: 47  MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEK 106

Query: 102 RKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGER 141
           RKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 107 RKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

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BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-38
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 17  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKE 76
           D  +GGG+ G +  G S        +  +EQDR LPIANV RIMK+ LP NAKISK+AKE
Sbjct: 5   DRDSGGGQNGNNQNGQS-------SLSPREQDRFLPIANVSRIMKKALPANAKISKDAKE 64

Query: 77  TMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREI 136
           TMQECVSEFI+FVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REI
Sbjct: 65  TMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 121

Query: 137 EGER 141
           EGER
Sbjct: 125 EGER 121

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BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-37
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 26  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 85
           GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEF
Sbjct: 12  GGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 71

Query: 86  INFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNK 145
           I+F+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NK
Sbjct: 72  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NK 129

Query: 146 GCCHNNSNNNHDA 159
           G   +   +N DA
Sbjct: 132 GSGKSGDGSNRDA 129

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BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-37
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 24  RVGGSTGGSSEEAG--SGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQEC 83
           + GG  GGS E  G  S   + V+EQDR LPIAN+ RIMK+ LP N KI+K+AKETMQEC
Sbjct: 5   QTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQEC 64

Query: 84  VSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERA 143
           VSEFI+FVT EASDKC +EKRKT+NGDD+  A+ATLGF+DY +PL+ YL+RYRE+EG+  
Sbjct: 65  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTK 124

Query: 144 QQNKG 147
              KG
Sbjct: 125 GSGKG 129

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BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.6e-37
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 19  STGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETM 78
           + GGG  G S G      G G     KEQDR LPIANV RIMK+ LP NAKISKE+KET+
Sbjct: 31  AAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETV 90

Query: 79  QECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEG 138
           QECVSEFI+FVTGEASDKC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL RYRE EG
Sbjct: 91  QECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEG 150

Query: 139 ERA 142
           E+A
Sbjct: 151 EKA 153

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BLAST of Lcy05g006230 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           DDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNA---HDA 156

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BLAST of Lcy05g006230 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGR 60
           MDDNT   ERLVEFKYDF+TGGG   VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           FDDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT---HDA 157

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BLAST of Lcy05g006230 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MD+NTG  ER VEFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHD 158
           DDYAEPLRRYLVRYR++EGERAQQNKGCC+NN+NNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNNN 158

[Close]

BLAST of Lcy05g006230 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.1e-71
Identity = 138/158 (87.34%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MD+NTG  ER +EFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHD 158
           DDYAEPLRRYLVRYR++EGERAQQNKGCC+N++NNN++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNNN 158

[Close]

BLAST of Lcy05g006230 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 135/150 (90.00%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 9   ERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPN 68
           ER VEFKYDF+ GG   VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRIMKQILPPN
Sbjct: 3   ERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPN 62

Query: 69  AKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 128
           AKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR
Sbjct: 63  AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 122

Query: 129 RYLVRYREIEGERAQQNKGCCHNNSNNNHD 158
           RYLVRYR++EGERAQQNKGCC+NN+NNN++
Sbjct: 123 RYLVRYRDMEGERAQQNKGCCNNNNNNNNN 152

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BLAST of Lcy05g006230 vs. NCBI nr
Match: XP_022953161.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFSTGGGR--VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGR 60
           MDDNT   ERLVEFKYDF+TGGG   VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           FDDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT---HDA 157

[Close]

BLAST of Lcy05g006230 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           DDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT---HDA 156

[Close]

BLAST of Lcy05g006230 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 143/159 (89.94%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFST-GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MDDNT   ERLVEFKYDF+T GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           DDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNA---HDA 156

[Close]

BLAST of Lcy05g006230 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 7.3e-72
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFSTGGGR-VGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRI 60
           MD+NTG  ERLVEFKYDF+ GGG  VGGSTGGSSEEAG+GVG VVKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHD 158
           DDYAEPLRRYLVRYRE+EGERAQQNKGCC   +NNNHD
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCC---NNNNHD 155

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BLAST of Lcy05g006230 vs. NCBI nr
Match: KAG6575846.1 (Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 9.5e-72
Identity = 143/162 (88.27%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MDDNTGKQERLVEFKYDFST----GGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANV 60
           MDDNT   ERLVEFKYDF+T    GGG VGGSTGGSSEEAGSG+G  VKEQDRLLPIANV
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANV 60

Query: 61  GRIMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALAT 120
           GRIMKQILPPNAKISKEAKETMQECVSEFI+FVTGEASDKCHKEKRKTVNGDDICCALAT
Sbjct: 61  GRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT 120

Query: 121 LGFDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSNNNHDA 159
           LGFDDYAEPLRRYL+RYREIEGERAQQNKGCC+NN+   HDA
Sbjct: 121 LGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT---HDA 159

[Close]

BLAST of Lcy05g006230 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 171.8 bits (434), Expect = 4.4e-43
Identity = 82/99 (82.83%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 42  VVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFINFVTGEASDKCHKEK 101
           ++VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFI+FVTGEASDKCHKEK
Sbjct: 47  MMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEK 106

Query: 102 RKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGER 141
           RKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 107 RKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of Lcy05g006230 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 17  DFSTGGGRVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKE 76
           D  +GGG+ G +  G S        +  +EQDR LPIANV RIMK+ LP NAKISK+AKE
Sbjct: 5   DRDSGGGQNGNNQNGQS-------SLSPREQDRFLPIANVSRIMKKALPANAKISKDAKE 64

Query: 77  TMQECVSEFINFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREI 136
           TMQECVSEFI+FVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REI
Sbjct: 65  TMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 121

Query: 137 EGER 141
           EGER
Sbjct: 125 EGER 121

[Close]

BLAST of Lcy05g006230 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 26  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 85
           GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEF
Sbjct: 12  GGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 71

Query: 86  INFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNK 145
           I+F+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NK
Sbjct: 72  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NK 129

Query: 146 GCCHNNSNNNHDA 159
           G   +   +N DA
Sbjct: 132 GSGKSGDGSNRDA 129

[Close]

BLAST of Lcy05g006230 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 26  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 85
           GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEF
Sbjct: 12  GGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 71

Query: 86  INFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNK 145
           I+F+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NK
Sbjct: 72  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NK 129

Query: 146 GCCHNNSNNNHDA 159
           G   +   +N DA
Sbjct: 132 GSGKSGDGSNRDA 129

[Close]

BLAST of Lcy05g006230 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 81/133 (60.90%), Postives = 98/133 (73.68%), Query Frame = 0


Query: 26  GGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 85
           GG +GGS           V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEF
Sbjct: 12  GGESGGS-----------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 71

Query: 86  INFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNK 145
           I+F+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+    NK
Sbjct: 72  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD----NK 129

Query: 146 GCCHNNSNNNHDA 159
           G   +   +N DA
Sbjct: 132 GSGKSGDGSNRDA 129

The following BLAST results are available for this feature:

BLAST of Lcy05g006230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	6.2e-42	82.83	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.9e-38	66.13	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SLG0	2.1e-37	60.90	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q67XJ2	2.1e-37	63.20	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
Q0J7P4	4.6e-37	65.04	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Lcy05g006230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM11	2.1e-72	89.94	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	2.1e-72	89.38	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BT19	1.0e-71	88.61	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	5.1e-71	87.34	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	1.4e-68	90.00	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Lcy05g006230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953161.1	4.3e-72	89.38	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]	[more]
XP_023549145.1	4.3e-72	89.94	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991512.1	4.3e-72	89.94	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_038876756.1	7.3e-72	90.51	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
KAG6575846.1	9.5e-72	88.27	Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Lcy05g006230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	4.4e-43	82.83	nuclear factor Y, subunit B5	[more]
AT5G47640.1	1.3e-39	66.13	nuclear factor Y, subunit B2	[more]
AT2G38880.2	1.5e-38	60.90	nuclear factor Y, subunit B1	[more]
AT2G38880.3	1.5e-38	60.90	nuclear factor Y, subunit B1	[more]
AT2G38880.1	1.5e-38	60.90	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 116..134 score: 34.09 coord: 78..96 score: 46.41 coord: 97..115 score: 34.21
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 34..155
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..158 e-value: 1.1E-43 score: 150.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 47..155
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 50..114 e-value: 9.4E-27 score: 93.1
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 34..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g006230.1	Lcy05g006230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding