Lcy05g001700 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g001700
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC7-like isoform X1
LocationChr05: 1629315 .. 1634167 (+)
RNA-Seq ExpressionLcy05g001700
SyntenyLcy05g001700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCACGTGCAGCACCCCTTGCCTCTCCCAACCGTATCTCCCTCTCTCGCTCACGCTGAACTAGCCGCCGCACGTCTGAGTAGCAGCTTCATTCCCGCGCCGCCGCCGCTTGTCCGAGCAGCAGCCTTTATCCACCTTCTTCTTTATCTCTCTCTCTCTCGGCCGCATCTTTCCTTCCCTCTCTCTCCGTCGCCGGCAACAACTGCTGGCAGCAGCGAATCGCCGGGCATCGCTAGAAGGGCGAACCTGAGAGCGAGGCAAGCTGGGAACGGGCTGAAGCTGACGATTCGAAGACAAAGTCCCTTCTCGTCATCGAAGACCCCAGTCGTCACGCCCCGTGTCTGTTGGGAGAGGGTTTGGTCGCGTCCAGTCCCGGTTCTGCCACTGTGAAGCCGCCGTCGCTGCAGATTCCTGGTCGTCGCCGGTGGTCGTGGGTTGTAGCAGCCTTGGTCGCGGATTGATGATCGTTTGGGTAAGCTTCAAATCGATTCCTTGGCCATTAAAGTTTTTAGTGATTTTTCTGGTGCGTTAAAACTTACCCATGGATTTTCCAAAACGATTTTAGATCCGTTTGGTTTCCGTTCGCGTTTAAATTCGGGAATTGGCATCATTTAGCCGCTGTCCGGAAGAGGATTGAAGGATTTGGGTTGTGTGAAGGGCGTCCTAGGAGAAATTCCTCTTTAATTGCTTTGGGTTCAAAGCCAGGTAAGTGAGTCTATTGTTGAAGTTTTTAATTGGGAGCATGTTTGATTTTCCATATTCTATGTGTTTCCTGAGTTATTCGAACAGGTATATGTTTATGTAAAATTGTTAAAGTATGAAATTTATTATGAATGTTTGCAAACGTTGAATTTGGAAATTTCTGAATTGTTGGTCTCTCGAAAATTTCATAATATGTATGAGTTTAAATGACATTTGAATTTCTTAAATTTTGGAGGGTACATGAAATTGATGTACTTATCCCTACATAGGACTTAGGGACATGAAATTGATGTACCTGAGTTGAGATTCGTGGAATTGACGTTCCTCAATAGGCGGCACATGAAATTGATGTGTCTAAGATAGGCATGAAATTGATGTATATCTAAGTTTATAGAGGAAAAATATTAGAGCCACCAAAATGTGATTGTTATTGATTCTAGAAGCATGCAAACGCGTGACCCAATCTCAATAGTAGGGTCACTTCCTAAGTACTTTAAATATTCATTTTTTTTAAAAAAATATTTTCCAAGTAAAGGCAAAGGCGCATGGGGCGGTTGATCGAGCTTGTTGGAATAGTCATGGGAGTCTAGAAAGCATTGTTTTCATCGTTTACGTTTCCGCATTCAAAGTTACTTTTAAATTTCATGATTGATTTACGCTTGACTTCAAATTTTAGAGGCCATGAAGAGTTTTGTTTAAACTTAAGGTTTCAAGATTTGTGACTTTGTTTTGACCATGGGATATCGATTATCTTTTGTTTTGAGGTGTTGTTCATATCGTTTTTATTTTGAAATATAAACATTCTTTACATTCTTGTGGGTCTCCATAGCATGCATGAGTATTGAACCCAATTAGCTTATTCTTAGAGTCGGGTTCTTACATATTGAATCACACAAGCCTTTTATCGAATGAAGATTTAAGGTCATAGACATTTGAGAATATACCTCCTATTTGTATTTATTTACTGTGAGGATACTAGTAGAGATGTATTGGTGATGTAGTGGAAATAGTTGTAGAAGGGCATAATGGTAATTAGGGGTGGTGTTTTGTTTATAAATAGGGGAGTTAGGTTCTTAGAGGGTGGAGGGTTTTGTGTGGTATTGTCCATTGTGGGACTTTAGGGAGAGACATAGCCCTCTCGAAAGGCTATAGTTATATTGTAGTTTCGATTTGATTTTGCAATATAGTAGTATTCCGTGTTCTCTGTGTTCGGGTGCCTAACATATACCTAGAGTAATTTTCTCCTTTCTTCTACACTCAGGGAGATGGCATTTAGAGGGCGAGGGCGAGGACGAGGTGGCGGTGGTGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTCTTCCCGGAGGTGGGTAGTTCTGTAAGCTAGAAAAGTCCTAACTTCTACTTGGTTTGAATTGGTGGACTGATAGTATATGCTAGCAAACTTCCTTGATGCTTGACTGAGTTCAAATCAGCATACCTTTGTAAATTATATGTGCTTTATTTCACTTATATTTACTGTGGCGCTGATATTCGAGTCATGTGAACTTTAAATAGTTTGAAAGATGAATTAAGGCTGTTGGTTATTGATGAAATCTGTTATACATTGTTTTGTATTTTTAAGTATCTTTTTTCCCCTTTCTCCTTGATATTTTTACTTCTTTTCTGGTTAACTATGAACTTGAAAGTATGGTTGCTTCTTTCCCGAGAAAATGACCAAATATAGTTTGAAATTTTGAACGTATGACCTTAAAAGTATTTGAGTTGGCAGCTTGTCCTTAAAAGGTTTTTGCTCTCACATTGTTAAGTACAATTTTTTTTTTCCTAAAAAAAAGAACAAATTTGATTTTTCTCCTTTTTTTTTTTAATATCGATTTTTCTCCTTGTTATTTAAGCATATATTTGCATGTCTTCTATTTCATGCTTTTTACTTTAAAATAATTGTTGCTAAGGTCCCGTTTGATAATCATTTGTTTTTTGGTTTTTGGCTTTTGAAAATTAAATCTATAAACACTATTCCCACTTATAAGTTTCCTTGTTTTATTATATACTTTCTTTTCATGTTTTCAAAAACCAACTCAAGTTTTGAAAACTAAAAAAAGTAGTTTTCAAAAACTTGTTTTTTGTTTTTGAAAATTGGCTAAGAAGTCAAATGTGTCCTTAAGCAAAGATGCAAACCATGGTAAGAAAATTGGAAGAAAACAAACATAAATTTCAAAAACCAAATAGTTATTAAACGGGGTCTAAATAACCGAGATTATTGGTTTTCTTATATATTGATATCCATCACTCTATTTATAGAGTTCTTAGTTGATGAAAATCACAAATGCTGTAAATAGTTCAGGCAGCCACAGAGCATTTCTCTTCTTAACTTCCTAGTGGGAAATGTTAATTCGAAGATAATATGCATCGAATTCTAGTACATATACTTGCGCGTTTACTGGTTTATTTCCTTTCCTAAGGAGATGTTTTCTTGCACAATTACAGAATGTAACTCTACCGAGCGTCAGTGATGTGCCTGAAGAAAAAAGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATGTCATGAAAAGTTAGTGTTGCTTCTAACTTCTCTTTTCTTCTGAAAGCAATGTTATTGCCCTTCTGTCTCGAACATTTTGTTGCAAAAAAATCGGTAATTTTTGTACATTACTTGGATTTTTGTATCAGAGATGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAGTAGTACTTTGAAACGTGATTCCCTTGCACAAATTCTACAGCTCACATCTAGGAACTTTCCTGAAGAATTGGTCGAAGGTTTGCAGTCTGAGATCTCTCAGAAAGCGATAAGAGTGATACTAAGATCATCTGTCTATTTACTGCAATCCTTTCTCTTCGGTTAAATTTCAGGTTTCAAAGGGAAATTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGTTTGTTGGGACAATAAGAGTTTTTCTCTCTCAACCAGTTCAAATGCCTATGCTACTTCTGTTTGTCACCTGTTGATGGATCCTTGTTGGTATATGTCCTGTTACAGGGCTGCAAAAATTGGACTTTCTGGAGAAGCGTGAAGAATCTTTCAAAGTAAGACATTTTGCCACCTCAATCTCTCATTCCCTTTATAACTGCTAGTCACTTGAATCTTTTCTTCTTTTAATTCTTATGGCAGTTTATGATGAGAAATTGTTGTACATGCACTCTTGCTCTGCAAGATCCCTGTGCTGATTTTTTCTTTTCTTGACTTCATTAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGATGAAGAAGAAGACGATGCACAGTCCGAGGAACTTACTGACGATGATTATTATCAGGTTTGGATAGAAGCTGTTGGATTTCTTGTGTGCTTCAATATAAATCTAAATCTTCACAAGAGCTTTTTGTAGGAGTGTCCATTTTTATGATTTGCCTAGACTTCTTATATTCTCTCTTGAAAGTTTCTTATACTGACATCGTTGAGTTGCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGAAGGTGGAGGTATGGTTTTTATTCTAATGGCGAGACAATATTGTAAGAATTTGAGTTTAGAACATTTTGTTCTATTTATTATATATATATATATTACAATGGGGTAGGGATTTGAAACTATGATGCGTTGAACTAACTTGTGTTAGCCTTCCTAAAGTAATATATTACTTTATGGATTCTGATTTCTGAATACATGTACTGATGTATATAGTTTCATAACATTGCAGACGAACCAGAATATTAGTCCCTATGGAAAATGGTGGTAAGATTTGGCAGGGCATTAGGGCTTTCTCCAACCCCAGGCATTTAATTGGTAGGGCATTGGATTGATTAACCAGATTTACATATTTTTTTAATAAGGTTTAAATTTCCTCCTTTCTTTCTTCTTTTGAGGATGTAAAGTATTCTATTTTTTAAAATTATTAAATTTAAGTTCAAATCATATTTTAGTTCTTCAATTTTCATGATTATTCTTTTCTGGTCTATGAAACTTGCATAATGAACAATATGTCTATATTGAATTTTTCTTTGAAC

mRNA sequence

CTCACGTGCAGCACCCCTTGCCTCTCCCAACCGTATCTCCCTCTCTCGCTCACGCTGAACTAGCCGCCGCACGTCTGAGTAGCAGCTTCATTCCCGCGCCGCCGCCGCTTGTCCGAGCAGCAGCCTTTATCCACCTTCTTCTTTATCTCTCTCTCTCTCGGCCGCATCTTTCCTTCCCTCTCTCTCCGTCGCCGGCAACAACTGCTGGCAGCAGCGAATCGCCGGGCATCGCTAGAAGGGCGAACCTGAGAGCGAGGCAAGCTGGGAACGGGCTGAAGCTGACGATTCGAAGACAAAGTCCCTTCTCGTCATCGAAGACCCCAGTCGTCACGCCCCGTGTCTGTTGGGAGAGGGTTTGGTCGCGTCCAGTCCCGGTTCTGCCACTGTGAAGCCGCCGTCGCTGCAGATTCCTGGTCGTCGCCGGTGGTCGTGGGTTGTAGCAGCCTTGGTCGCGGATTGATGATCGTTTGGATCCGTTTGGTTTCCGTTCGCGTTTAAATTCGGGAATTGGCATCATTTAGCCGCTGTCCGGAAGAGGATTGAAGGATTTGGGTTGTGTGAAGGGCGTCCTAGGAGAAATTCCTCTTTAATTGCTTTGGGTTCAAAGCCAGGGAGATGGCATTTAGAGGGCGAGGGCGAGGACGAGGTGGCGGTGGTGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTCTTCCCGGAGAATGTAACTCTACCGAGCGTCAGTGATGTGCCTGAAGAAAAAAGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATGTCATGAAAAAGATGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAGTAGTACTTTGAAACGTGATTCCCTTGCACAAATTCTACAGCTCACATCTAGGAACTTTCCTGAAGAATTGGTCGAAGGTTTCAAAGGGAAATTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTGGAGAAGCGTGAAGAATCTTTCAAAGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGATGAAGAAGAAGACGATGCACAGTCCGAGGAACTTACTGACGATGATTATTATCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGAAGGTGGAGGTATGGTTTTTATTCTAATGGCGAGACAATATTGTAAGAATTTGAGTTTAGAACATTTTGTTCTATTTATTATATATATATATATTACAATGGGGTAGGGATTTGAAACTATGATGCGTTGAACTAACTTGTGTTAGCCTTCCTAAAGTAATATATTACTTTATGGATTCTGATTTCTGAATACATGTACTGATGTATATAGTTTCATAACATTGCAGACGAACCAGAATATTAGTCCCTATGGAAAATGGTGGTAAGATTTGGCAGGGCATTAGGGCTTTCTCCAACCCCAGGCATTTAATTGGTAGGGCATTGGATTGATTAACCAGATTTACATATTTTTTTAATAAGGTTTAAATTTCCTCCTTTCTTTCTTCTTTTGAGGATGTAAAGTATTCTATTTTTTAAAATTATTAAATTTAAGTTCAAATCATATTTTAGTTCTTCAATTTTCATGATTATTCTTTTCTGGTCTATGAAACTTGCATAATGAACAATATGTCTATATTGAATTTTTCTTTGAAC

Coding sequence (CDS)

ATGGCATTTAGAGGGCGAGGGCGAGGACGAGGTGGCGGTGGTGGGACCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTCTTCCCGGAGAATGTAACTCTACCGAGCGTCAGTGATGTGCCTGAAGAAAAAAGCTTGGTTATTTGTAACTCCAAGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAGAATGTCATGAAAAAGATGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAGTAGTACTTTGAAACGTGATTCCCTTGCACAAATTCTACAGCTCACATCTAGGAACTTTCCTGAAGAATTGGTCGAAGGTTTCAAAGGGAAATTGCGGAACAAACGAAAAGTTCAATGGAATCCCGAGTCAGGGCTGCAAAAATTGGACTTTCTGGAGAAGCGTGAAGAATCTTTCAAAGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGATGAAGAAGAAGACGATGCACAGTCCGAGGAACTTACTGACGATGATTATTATCAGAACGAATACTTCGACGATGATGAAGATGATTACAACATGGAAGATGAAGGTGGAGGTATGGTTTTTATTCTAATGGCGAGACAATATTGTAAGAATTTGAGTTTAGAACATTTTGTTCTATTTATTATATATATATATATTACAATGGGGTAG

Protein sequence

MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKASPFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDDYYQNEYFDDDEDDYNMEDEGGGMVFILMARQYCKNLSLEHFVLFIIYIYITMG
Homology
[Close]
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match: A0A6J1DMV9 (ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=3673 GN=LOC111021466 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.3e-94
Identity = 190/202 (94.06%), Postives = 197/202 (97.52%), Query Frame = 0 

Query: 1   MAFR-GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKA 60
           MAFR GRGRGRGGGGG FQYAKQEPFELFPENVTLPSVSDVPEEK LVICNS+LLNYWKA
Sbjct: 1   MAFRGGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSRLLNYWKA 60

Query: 61  SPFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120
           SPF+LEENV+KKMQRTEIEKFSDRSK +STLKRDSLAQILQLTSRNFPEELVEGFKGKLR
Sbjct: 61  SPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120

Query: 121 NKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDD 180
           NKRKVQWNPESGLQKLDFLEKREES KGQDKDDKEKKEGEEGEDE++EEDDAQSEELTDD
Sbjct: 121 NKRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDD 180

Query: 181 DYYQNEYFDDDEDDYNMEDEGG 202
           DYYQNEYFDDDEDDYNMED+GG
Sbjct: 181 DYYQNEYFDDDEDDYNMEDDGG 202

[Close]
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match: A0A6J1GNY2 (glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.2e-90
Identity = 182/201 (90.55%), Postives = 194/201 (96.52%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE K LVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQ+TEIE+FSDR+KS+STLKRDSLAQILQLTSRNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDFLEKREES KGQ+KDDKEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGG 200

[Close]
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match: A0A6J1JVL5 (DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 GN=LOC111488719 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 7.2e-90
Identity = 182/201 (90.55%), Postives = 193/201 (96.02%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE K LVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQ+ EIE+FSDR+KS+STLKRDSLAQILQLTSRNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKIEIERFSDRAKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDFLEKREES KGQ+KDDKEKKEGE  EDEDEEED+AQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEEDEAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNMEDEGG
Sbjct: 181 YYQNEYFDDDEDDYNMEDEGG 200

[Close]
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match: A0A5D3BVU1 (DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00450 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.0e-89
Identity = 178/204 (87.25%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS++PEE +L +     L YWKAS
Sbjct: 1   MAFRGRGRGRGGGGGSFQYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQRTEIEKFSDR K +STLKRDSLAQI+QLTSRNFPEELVEGFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL+K+DFLEKREES KGQDK+DKEKKEGEEGEDEDEEE+DAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGGGMV 205
           YYQNEYFDDDEDDYNME+EGGG +
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGGGFL 204

[Close]
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match: A0A1S3CGV4 (DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 5.2e-88
Identity = 177/201 (88.06%), Postives = 189/201 (94.03%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG+FQYAKQEPFELFPENVTLPSVS++PEE +L +     L YWKAS
Sbjct: 1   MAFRGRGRGRGGGGGSFQYAKQEPFELFPENVTLPSVSEMPEELALAMGQINFLKYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQRTEIEKFSDR K +STLKRDSLAQI+QLTSRNFPEELVEGFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEIEKFSDRLKMNSTLKRDSLAQIIQLTSRNFPEELVEGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL+K+DFLEKREES KGQDK+DKEKKEGEEGEDEDEEE+DAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLKKMDFLEKREESLKGQDKEDKEKKEGEEGEDEDEEEEDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGG 201

[Close]
BLAST of Lcy05g001700 vs. NCBI nr
Match: XP_022154143.1 (ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154151.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154160.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_022154168.1 ribosomal L1 domain-containing protein CG13096-like [Momordica charantia])

HSP 1 Score: 355.9 bits (912), Expect = 2.6e-94
Identity = 190/202 (94.06%), Postives = 197/202 (97.52%), Query Frame = 0 

Query: 1   MAFR-GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKA 60
           MAFR GRGRGRGGGGG FQYAKQEPFELFPENVTLPSVSDVPEEK LVICNS+LLNYWKA
Sbjct: 1   MAFRGGRGRGRGGGGGAFQYAKQEPFELFPENVTLPSVSDVPEEKGLVICNSRLLNYWKA 60

Query: 61  SPFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120
           SPF+LEENV+KKMQRTEIEKFSDRSK +STLKRDSLAQILQLTSRNFPEELVEGFKGKLR
Sbjct: 61  SPFFLEENVLKKMQRTEIEKFSDRSKLNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLR 120

Query: 121 NKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDD 180
           NKRKVQWNPESGLQKLDFLEKREES KGQDKDDKEKKEGEEGEDE++EEDDAQSEELTDD
Sbjct: 121 NKRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEEDEEDDAQSEELTDD 180

Query: 181 DYYQNEYFDDDEDDYNMEDEGG 202
           DYYQNEYFDDDEDDYNMED+GG
Sbjct: 181 DYYQNEYFDDDEDDYNMEDDGG 202

[Close]
BLAST of Lcy05g001700 vs. NCBI nr
Match: XP_038898864.1 (glutamic acid-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 354.4 bits (908), Expect = 7.6e-94
Identity = 188/201 (93.53%), Postives = 194/201 (96.52%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGRGGGGG FQYAKQEPFELFPENVTLP VSD+PEEKSL I N+K LNYWKAS
Sbjct: 1   MAFRGRGRGRGGGGGAFQYAKQEPFELFPENVTLPIVSDMPEEKSLAIRNNKFLNYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQRTE+EKFSDRSKS+STLKRDSLAQILQLTSRNFPEELV+GFKGKLR 
Sbjct: 61  PFYLEENVMKKMQRTEVEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVDGFKGKLRT 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGLQKLDFLEKREES KGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGG 201

[Close]
BLAST of Lcy05g001700 vs. NCBI nr
Match: XP_023548752.1 (DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-90
Identity = 184/201 (91.54%), Postives = 194/201 (96.52%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE K LVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQRTEIE+FSDR+KS+STLKRDSLAQILQLTSRNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQRTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDFLEKREES KGQ+KDDKEKKEGE  EDEDEEEDDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEEDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGG 200

[Close]
BLAST of Lcy05g001700 vs. NCBI nr
Match: XP_022953194.1 (glutamic acid-rich protein-like [Cucurbita moschata])

HSP 1 Score: 341.3 bits (874), Expect = 6.7e-90
Identity = 182/201 (90.55%), Postives = 194/201 (96.52%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE K LVICNS+LLNYWKAS
Sbjct: 1   MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 60

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQ+TEIE+FSDR+KS+STLKRDSLAQILQLTSRNFPEELVEGFKGKLR+
Sbjct: 61  PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 120

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDFLEKREES KGQ+KDDKEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 121 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 180

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 181 YYQNEYFDDDEDDYNMEEEGG 200

[Close]
BLAST of Lcy05g001700 vs. NCBI nr
Match: KAG6575499.1 (hypothetical protein SDJN03_26138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 6.7e-90
Identity = 182/201 (90.55%), Postives = 194/201 (96.52%), Query Frame = 0 

Query: 1   MAFRGRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKAS 60
           MAFRGRGRGR GGGG+FQYAKQEPFELFPENVTLP+VSD+PE K LVICNS+LLNYWKAS
Sbjct: 126 MAFRGRGRGR-GGGGSFQYAKQEPFELFPENVTLPNVSDIPEAKGLVICNSRLLNYWKAS 185

Query: 61  PFYLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRN 120
           PFYLEENVMKKMQ+TEIE+FSDR+KS+STLKRDSLAQILQLTSRNFPEELVEGFKGKLR+
Sbjct: 186 PFYLEENVMKKMQKTEIERFSDRTKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRS 245

Query: 121 KRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDD 180
           KRKVQWNPESGL KLDFLEKREES KGQ+KDDKEKKEGE  EDEDEE+DDAQSEELTDDD
Sbjct: 246 KRKVQWNPESGLTKLDFLEKREESLKGQNKDDKEKKEGEGEEDEDEEDDDAQSEELTDDD 305

Query: 181 YYQNEYFDDDEDDYNMEDEGG 202
           YYQNEYFDDDEDDYNME+EGG
Sbjct: 306 YYQNEYFDDDEDDYNMEEEGG 325

[Close]
BLAST of Lcy05g001700 vs. TAIR 10
Match: AT4G01590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-21
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 0 

Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENVMKKMQR--TEIEKFSDRSK-SSSTLKRDSLAQILQLTSRNFPEELVEGFKG 120
           SP++L +  + K ++    IE++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD  EK E  FK + K++K     EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFKVEGKEEK-----EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDEG 201
            + DY QN+ FDDD+DDYN ED+G
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]
BLAST of Lcy05g001700 vs. TAIR 10
Match: AT4G01590.2 (unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-21
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 0 

Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENVMKKMQR--TEIEKFSDRSK-SSSTLKRDSLAQILQLTSRNFPEELVEGFKG 120
           SP++L +  + K ++    IE++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD  EK E  FK + K++K     EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFKVEGKEEK-----EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDEG 201
            + DY QN+ FDDD+DDYN ED+G
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]
BLAST of Lcy05g001700 vs. TAIR 10
Match: AT4G01590.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1). )

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-21
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 0 

Query: 1   MAFRG-RGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLLNYWKA 60
           M+++G RG+ +G GG    Y K EPF +FPE +TLP    +  +  LV        +W+ 
Sbjct: 1   MSWKGARGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVQSYFTFNKFWRN 60

Query: 61  SPFYLEENVMKKMQR--TEIEKFSDRSK-SSSTLKRDSLAQILQLTSRNFPEELVEGFKG 120
           SP++L +  + K ++    IE++SD  K    + K  S    L L   NFP+EL+   + 
Sbjct: 61  SPYHLGDGGVSKKEKESLNIERYSDSLKPKMKSNKNGSFFDFLVLRPDNFPKELLGDTRR 120

Query: 121 KLRNKRKVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEEL 180
           + R  ++ +W+ E+ LQKLD  EK E  FK + K++K     EEGED DEE  +++ EE 
Sbjct: 121 EQRPVKRAKWSQEADLQKLDVFEKLEAKFKVEGKEEK-----EEGED-DEEVVESEGEES 180

Query: 181 TDDDYYQNEYFDDDEDDYNMEDEG 201
            + DY QN+ FDDD+DDYN ED+G
Sbjct: 181 DNGDYDQNQDFDDDDDDYNNEDDG 194

[Close]
BLAST of Lcy05g001700 vs. TAIR 10
Match: AT4G35680.1 (Arabidopsis protein of unknown function (DUF241) )

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-16
Identity = 72/199 (36.18%), Postives = 107/199 (53.77%), Query Frame = 0 

Query: 5   GRGRGRGGGGGTFQYAKQEPFELFPENVTLPSVSDVPEEKSLVICNSKLL--NYWKASPF 64
           GRG+ +G GG    Y K EPF +FPE +TLP    +  +  LV+  S      +W  SP+
Sbjct: 331 GRGKPKGYGG---DYGKPEPFVIFPE-ITLPDPKSISTDSQLVVVQSYFTFNKFWMNSPY 390

Query: 65  YLEENVMKKMQRTEIEKFSDRSKSSSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRNKR 124
           +L +  + K           + K+S  ++R            NF +ELV   + + R  +
Sbjct: 391 HLCDGGVSK-----------KEKASLDIERPD----------NFSKELVGDTRREQRPVK 450

Query: 125 KVQWNPESGLQKLDFLEKREESFKGQDKDDKEKKEGEEGEDEDEEEDDAQSEELTDDDYY 184
           + +W+ E+ LQKLD  EK E  FK Q  ++K     E+GED DE+  +++ EE  + DY 
Sbjct: 451 RAKWSQEADLQKLDVFEKLESKFKTQGNEEK-----EDGED-DEQVVESEGEESDNGDYD 498

Query: 185 QNEYFDDDEDDYNMEDEGG 202
           QN+ FDDDEDDYN E++GG
Sbjct: 511 QNQDFDDDEDDYNHEEDGG 498

The following BLAST results are available for this feature:
BLAST of Lcy05g001700 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g001700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DMV91.3e-9494.06ribosomal L1 domain-containing protein CG13096-like OS=Momordica charantia OX=36... [more]
A0A6J1GNY23.2e-9090.55glutamic acid-rich protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455808 PE... [more]
A0A6J1JVL57.2e-9090.55DNA-directed RNA polymerase III subunit rpc31-like OS=Cucurbita maxima OX=3661 G... [more]
A0A5D3BVU18.0e-8987.25DNA-directed RNA polymerase III subunit RPC7-like isoform X1 OS=Cucumis melo var... [more]
A0A1S3CGV45.2e-8888.06DNA-directed RNA polymerase III subunit OS=Cucumis melo OX=3656 GN=LOC103500773 ... [more]
BLAST of Lcy05g001700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154143.12.6e-9494.06ribosomal L1 domain-containing protein CG13096-like [Momordica charantia] >XP_02... [more]
XP_038898864.17.6e-9493.53glutamic acid-rich protein-like isoform X2 [Benincasa hispida][more]
XP_023548752.11.3e-9091.54DNA-directed RNA polymerase III subunit rpc31-like [Cucurbita pepo subsp. pepo][more]
XP_022953194.16.7e-9090.55glutamic acid-rich protein-like [Cucurbita moschata][more]
KAG6575499.16.7e-9090.55hypothetical protein SDJN03_26138, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g001700 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01590.15.4e-2138.73unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein... [more]
AT4G01590.25.4e-2138.73unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein... [more]
AT4G01590.35.4e-2138.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G35680.12.3e-1636.18Arabidopsis protein of unknown function (DUF241) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PFAMPF11705RNA_pol_3_Rpc31coord: 4..192
e-value: 4.3E-14
score: 53.3
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 1..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..157
NoneNo IPR availablePANTHERPTHR15367:SF2DNA-DIRECTED RNA POLYMERASE III SUBUNITcoord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g001700.1Lcy05g001700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006383 transcription by RNA polymerase III
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity