Lcy04g020370 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g020370
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SPARK domain-containing protein
Location	Chr04: 51868142 .. 51868822 (+)
RNA-Seq Expression	Lcy04g020370
Synteny	Lcy04g020370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACTTTGCCCTCAAACAATACAAACATCCTCCTAGAGACGATCGATACAACATGGGTAACTGTTGCAGAGGTCAATCCTCCACCAAGGCAGCGACAGGCGGCGACCAGAGGGCTCCGGCGCCGAAGAACCACAGTCAGAGAAAGCACTCCGATGGAGAAAATGGAGCCAATTCTTGTTGTTGTTCTAGTACGAAGGGCTCAGACTCAGAAGGAGGTAATTTGAGAGAAGTGAAAATAAGGATGACGAAGAAGGAGCTAGAGGAATTGGTTGGATGGTTGAACATGGCGGATTCTAGTTTTGAACATGTAATGGCTCGCCTTGTGAACGTCATCAGCGATCAAAGTGGTGATAATGAAGAAGATGATAACAGTGGCCAAGTGGTGAAATTGCGCCAGCAACGTTCGTGGAGGCCTTCTCTGCAGAGCATTCCAGAGATTAACTGAAGTACGTATTTGAAGTATATATATGATTTTAATTACTTTTTCCACTTATTATAATTATAATGAAGTTACTTTTTTTCTTTTTTTAATTACTTGGGTTCTATGCTTATTATATGGAAATATATGATTTCTTCACATTACTTTGTCTCATACGATTAGGGGACGAAATGGTGAGAAGATATGGGATGGTTTCAAAAGAGGATATGAAACAACGTGATTATTTTGTAAGAGAAGTGAA

mRNA sequence

CAAACTTTGCCCTCAAACAATACAAACATCCTCCTAGAGACGATCGATACAACATGGGTAACTGTTGCAGAGGTCAATCCTCCACCAAGGCAGCGACAGGCGGCGACCAGAGGGCTCCGGCGCCGAAGAACCACAGTCAGAGAAAGCACTCCGATGGAGAAAATGGAGCCAATTCTTGTTGTTGTTCTAGTACGAAGGGCTCAGACTCAGAAGGAGGTAATTTGAGAGAAGTGAAAATAAGGATGACGAAGAAGGAGCTAGAGGAATTGGTTGGATGGTTGAACATGGCGGATTCTAGTTTTGAACATGTAATGGCTCGCCTTGTGAACGTCATCAGCGATCAAAGTGGTGATAATGAAGAAGATGATAACAGTGGCCAAGTGGTGAAATTGCGCCAGCAACGTTCGTGGAGGCCTTCTCTGCAGAGCATTCCAGAGATTAACTGAAGGGACGAAATGGTGAGAAGATATGGGATGGTTTCAAAAGAGGATATGAAACAACGTGATTATTTTGTAAGAGAAGTGAA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACCAAGGCAGCGACAGGCGGCGACCAGAGGGCTCCGGCGCCGAAGAACCACAGTCAGAGAAAGCACTCCGATGGAGAAAATGGAGCCAATTCTTGTTGTTGTTCTAGTACGAAGGGCTCAGACTCAGAAGGAGGTAATTTGAGAGAAGTGAAAATAAGGATGACGAAGAAGGAGCTAGAGGAATTGGTTGGATGGTTGAACATGGCGGATTCTAGTTTTGAACATGTAATGGCTCGCCTTGTGAACGTCATCAGCGATCAAAGTGGTGATAATGAAGAAGATGATAACAGTGGCCAAGTGGTGAAATTGCGCCAGCAACGTTCGTGGAGGCCTTCTCTGCAGAGCATTCCAGAGATTAACTGA

Protein sequence

MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLRQQRSWRPSLQSIPEIN

Homology

[Close]

BLAST of Lcy04g020370 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 9.4e-39
Identity = 94/131 (71.76%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCCRGQSST   +GGD+RA  PKN  QR+H     GA SC   ST    S+ GNLRE+
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRH-----GAGSC---STTIKGSKEGNLREL 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDN--EEDDNSGQVVKLRQQRS 120
           KIRMTKKEL+EL+GWLNMADSSFE VMARLVNVISDQ+GD+  E+D+N GQ+VKLRQQRS
Sbjct: 61  KIRMTKKELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRS 120

Query: 121 WRPSLQSIPEI 130
           WRPSLQSIPEI
Sbjct: 121 WRPSLQSIPEI 123

[Close]

BLAST of Lcy04g020370 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36
Identity = 89/129 (68.99%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCC+GQ ST      D+R P  KNH QR+H +G    +SCC   T        NLREV
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEG----SSCCSKET--------NLREV 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLRQQRSWR 120
           KIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQ+GDN    N+ QVVKLRQQRSWR
Sbjct: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVINDQNGDN----NNDQVVKLRQQRSWR 113

Query: 121 PSLQSIPEI 130
           PSLQSIPEI
Sbjct: 121 PSLQSIPEI 113

[Close]

BLAST of Lcy04g020370 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36
Identity = 89/129 (68.99%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCC+GQ ST      D+R P  KNH QR+H +G    +SCC   T        NLREV
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEG----SSCCSKET--------NLREV 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLRQQRSWR 120
           KIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQ+GDN    N+ QVVKLRQQRSWR
Sbjct: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVINDQNGDN----NNDQVVKLRQQRSWR 113

Query: 121 PSLQSIPEI 130
           PSLQSIPEI
Sbjct: 121 PSLQSIPEI 113

[Close]

BLAST of Lcy04g020370 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.0e-30
Identity = 80/129 (62.02%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCC+ QSST    G     P  KNH QR++ +G                S+  NLREV
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEG---------------SSKETNLREV 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLRQQRSWR 120
           KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVI+ Q+GDN    N+ QVVKLRQQRSWR
Sbjct: 61  KIRMTKKELQELVGWLNMADSSFEQVMARLVNVINYQNGDN----NNDQVVKLRQQRSWR 110

Query: 121 PSLQSIPEI 130
           PSLQSIPE+
Sbjct: 121 PSLQSIPEM 110

[Close]

BLAST of Lcy04g020370 vs. ExPASy TrEMBL
Match: A0A2I4DRY0 (uncharacterized protein LOC108982886 OS=Juglans regia OX=51240 GN=LOC108982886 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-09
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSD-----------GENGANSCCCSSTKG 60
           MGNCCR +S +    G D  +   K   +  H +           GENG  +   S T  
Sbjct: 1   MGNCCRRESRSMVWAGDDWGSLTSKIDEEADHQNTNYNVERLRLLGENGDFALSNSPTST 60

Query: 61  SDSEGGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQ 120
             + G   REV++++TKKELEELVG +++   S + V+A+L++  +D   D  E D+   
Sbjct: 61  GTTTGAATREVRVKITKKELEELVGRVDVRGLSAKQVLAQLMDA-ADHIYDEAEHDH--- 120

Query: 121 VVKLRQQRSWRPSLQSIPEIN 131
                  RSWRP+LQSIPE+N
Sbjct: 121 -------RSWRPALQSIPEVN 130

[Close]

BLAST of Lcy04g020370 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 94/131 (71.76%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCCRGQSST   +GGD+RA  PKN  QR+H     GA SC   ST    S+ GNLRE+
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRH-----GAGSC---STTIKGSKEGNLREL 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDN--EEDDNSGQVVKLRQQRS 120
           KIRMTKKEL+EL+GWLNMADSSFE VMARLVNVISDQ+GD+  E+D+N GQ+VKLRQQRS
Sbjct: 61  KIRMTKKELKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRS 120

Query: 121 WRPSLQSIPEI 130
           WRPSLQSIPEI
Sbjct: 121 WRPSLQSIPEI 123

[Close]

BLAST of Lcy04g020370 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-38
Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCCRGQSST   +GGD+RA  PKN SQR+H     GANSC   ST    S+ GNLRE+
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRALPPKNLSQRRH-----GANSC---STTIKGSKEGNLREL 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDD--NSGQVVKLRQQRS 120
           KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVIS+ +GD+ E+D  N GQ+VKLRQQRS
Sbjct: 61  KIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRS 120

Query: 121 WRPSLQSIPEI 130
           WRPSLQSIPEI
Sbjct: 121 WRPSLQSIPEI 123

[Close]

BLAST of Lcy04g020370 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 4.1e-36
Identity = 92/131 (70.23%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCCRGQSST   +G ++RA  PKN  QR+H     GA+SC   ST    S+ GN+RE+
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRH-----GASSC---STTIKGSKEGNMREL 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDN--EEDDNSGQVVKLRQQRS 120
           KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVIS+Q+GD+  EED N GQ+VKLRQQRS
Sbjct: 61  KIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRS 120

Query: 121 WRPSLQSIPEI 130
           WRPSLQSIPEI
Sbjct: 121 WRPSLQSIPEI 123

[Close]

BLAST of Lcy04g020370 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 5.3e-36
Identity = 91/131 (69.47%), Postives = 105/131 (80.15%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCCRGQSST   +G ++RA  PKN  QR+H     GA+SC   ST    S+ GN+RE+
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRH-----GASSC---STTIKGSKEGNMREL 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDD--NSGQVVKLRQQRS 120
           KIRMTKKEL+ELVGWLNMADSSFE VMARLVNVIS+Q+GD+ E+D  N GQ+VKLRQQRS
Sbjct: 61  KIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRS 120

Query: 121 WRPSLQSIPEI 130
           WRPSLQSIPEI
Sbjct: 121 WRPSLQSIPEI 123

[Close]

BLAST of Lcy04g020370 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 89/129 (68.99%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRKHSDGENGANSCCCSSTKGSDSEGGNLREV 60
           MGNCC+GQ ST      D+R P  KNH QR+H +G    +SCC   T        NLREV
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEG----SSCCSKET--------NLREV 60

Query: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLRQQRSWR 120
           KIRMTKKELEELVGWLNMADSSFEHVMARLVNVI+DQ+GDN    N+ QVVKLRQQRSWR
Sbjct: 61  KIRMTKKELEELVGWLNMADSSFEHVMARLVNVINDQNGDN----NNDQVVKLRQQRSWR 113

Query: 121 PSLQSIPEI 130
           PSLQSIPEI
Sbjct: 121 PSLQSIPEI 113

[Close]

BLAST of Lcy04g020370 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 1   MGNCCRGQSSTKAATGGDQRAPAPKNHSQRK----HSDGENGANSCCCSS--TKGSDSEG 60
           MGNC      T  +  GD      K   +R+    H D ++G      +S  T  S S  
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  GNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQSGDNEEDDNSGQVVKLR 120
              RE+KIR+TKKELE+L+  + +   + E ++++L+    DQ G +  D  +       
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTN------- 120

Query: 121 QQRSWRPSLQSIPEIN 131
             + W+P LQSIPE++
Sbjct: 121 HHQPWKPVLQSIPEMD 129

The following BLAST results are available for this feature:

BLAST of Lcy04g020370 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g020370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IM02	9.4e-39	71.76	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A5D3CNX5	3.3e-36	68.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	3.3e-36	68.99	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A0A0KHU7	8.0e-30	62.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A2I4DRY0	7.8e-09	36.17	uncharacterized protein LOC108982886 OS=Juglans regia OX=51240 GN=LOC108982886 P...	[more]

BLAST of Lcy04g020370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977330.1	1.9e-38	71.76	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
XP_023544016.1	2.5e-38	72.52	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]
KAG6603773.1	4.1e-36	70.23	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	5.3e-36	69.47	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008441100.1	6.9e-36	68.99	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]

BLAST of Lcy04g020370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	3.2e-07	30.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..130
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..129
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g020370.1	Lcy04g020370.1	mRNA