Lcy04g010080 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g010080
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr04: 41438348 .. 41442026 (+)
RNA-Seq Expression	Lcy04g010080
Synteny	Lcy04g010080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTTTGCTTGGTAAGTGGTAACTATCTCATTCTGCTATCTTACAATTTGAGTTTCTTATCTATAGCAATTTTAGTATCTTTCTCCATGTTGTCTGCTAGTTTCGCCATCCTATGGTCGTCGTCCCTTCAGTGATGGCTATTGCTTTCTTCTTTAGCTACTCTGTTGCTTCAATATTTTTCTATATTTACTTCATTGGAACAGACTCAAACCTTTCTTTTCTTTATCATCTATATTTTTTAATTGAACACATCATTGGTTCATAAATAATTAAAAGTGAGTGTGATTCCCCACATAAATAATAATTAGGGAAAAATACCTTTTTAGTCCTTGAGTTTTCATTGATAGGTTACTTTGGTCCCTAGATTTTTAAAACATACCCTTTTGGTCCCTGAGTTTTTCAAAATAGATTTAAAAGGTCCTTCCAGTTACTTTTTCTGTTAACTACATTATTATAATGATTTTATATTAGTTTTATATATTTAAAATTACAAAAAGGAAGTTAAATGATTTTTTTTTCTCCTCTGTCTCTATCTTTCTCCTCCCTCCTCTTTCTGCTTTCAGTCTCTTTTCCCACCCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGCCCCATTTGGTCTCTGAGCTTGAGCGAGCACCAATCATTCCTCTATTCTGCATCTTGGTACAAGACCTTCAAAGTCTAGAGAGTTTACAAATTTGAGCCCCAAATCCTAGTGAGAGAAACAAAGACTCAATTTATAGAGAGGGAAAAATTGGTGATTCAATCCAAGGTATACATGAGGGAAACATAGCTAGCATATTATTGAGTACTTGAAGAGAAATAACTCTTTCTTTTCCTCTCTCTCTCTCCCTCTCTTTGTTGATAGTGTAGTGGAAGAACAAAAATGTGAAGAAATGCTAGAACAGAGAGCTAAGAAAGGGAGTCAAAAAATGGGAATTGACCCAATAATCTCACAAGCCATATGCTTTAAATGTGGATCCTCCCAATAGCATCAAAACCCCTCATTGGCCAGCTTTCAATAAAACTAATGGCCAAAACCCAGCAAGGGATCTATTTAGGGCACCGATTTCAGAACCCAAAGAAAAAAAAAAAAAAAAAAAACCACACTTATTTTTCAGTGAACTACAACCCAATCTTGTTGATCTCCTTCCATGGCAGTGAAATTTTGTTCCATTTTCCTGCCTTTGTTGACGGGGAAGAGGGTTGACGGAGAGGAAAAAGAGATCGGGAGAAAGAGTAGGGAGGAGCGAGACTGATGAGAGAGAAAAAATAATTTCTCTCAATTTTTTTAAGTTTTAAATATATAAAAATAATGTAAAATCAATCTGTTAGTGTAGTTAACGAGTAAGTAACTGGAGGGACTATTTAAACCTATTTTGAAAAACTTAGAGGGACTAAAAGAGTATGTTTTGAAAACTGAGAGACTAAAGTGATCTATCAATGAAAACTCAGGGACTAAAAAGGTAATTTTCCCTGAAAATAATTTTTTACTTTCCCAGATTTTTATTTAAAGTATTGTCAACAAAAATATTTTCATGCGTACCAAATGAAAAAACATATGTATGAATTAATGAATTTTCACAAAAAAAAAAAAAAAAAAAAAAGTAGTTGAACTTTAATTGACATTTGTGAGTTTTGTAAGACTTATTCCAGGATCAATTGGCATAAAGCTTATTCCCCACTCCTACATATTGTAAAAAATGTTCAAGATGTCGATGATTTATTGGACACAAAAGTGAATGTTCAAGAACTTATTTGAAACTTTTTAAAGTTTAGGGATTAAATTAACACAACATTAAAAGTATAGAAACTAAACATGTAATTTAACAAAAAAAAAAAAAAAATTCAAGGATCAATTCCTAGGGCCCCATTTGATGACCCTTTAGTTTTTGAAAATTAAGCTTATATACTCCACTTCTACCTCTAGGTTTTTTTTTTTTTGGAAAAAAAAAAATTTTCAAAAACTTGTTTTTGTTTTTTAAATTTGGTTAGGAATTCAAATGTATCCTTAACAAATATGAAAACTATGGTGAGGAAATGAGAAGAAAACAAACCTAATTTTAAAAAACCATTACCAAATGGGACCTAAAGGTCTCGATAACGTTTCCGTTTCTTATTCCTGTTTCTCATTTTTCAAGAAACATATATGTTTGATAACTGATTTTGTTTCTAGTTTCTAACTTTCTAGAAACGGAAGAAAAATTCTACAAAAAGTAGTTTATCACATTTTGTTCTGTTTCTTTTTTTTTCATATTTCATGCATGTACCCATCTTTCTCATCTCATTTTTCTCTCTTTTTTTTTTCTACCACTTCCTTATTTATTTATTTTTTCATTTTTTTCTCTTTTCCGTTATTTCTTTTTTTTTTTTTTTCTTTTTAATCTTTGTTTCTCTTTTCAGTAATTACTTTCTCTTTTTTTTTTTTTTTTAATCTTTTTTCCCTCTTTTCATTAATGAGCTTTTAGTTATTATTTTATATTTAAATCTATATTATTTTTGGTTAATTTTGGTATGATTTTAATTTATTTATTAAATTAATTAACTAATAAGATATTTCACGTTTGCCATTAATTATAAAAAGATATATATTTTTTATTTCTATCTTTTTGATCTTACATGCATTTTTAAAGGAAATCAATTCAAGATATGTGGGTGTATAAACTCGATTGGCTAACCTTAAATAGATGTCTCGATACCACAAACACACACACAAAAAAATATATGAATATCATGTTGTGCAATAAATTAATGATGATTGAAATTTTACAAAGTTTGCAAATATAAAAATTAATCTAATTGAACTAACTTTGTATTGTTAAAAATAAATTGGTTAGATGTCTCTAATGTTCGAGATCTCGAGAGGTATGAGAATGTCTTTATCCATCGATGCTAAGGAATTTATGTGTTTCTATAGATATCAAAGACAAGTGGTTAAGCTTGGCAGACAATTCGATGGAAGCATTAGAGAGGATTTGTGTGGGAGCGTGGTCAATTTGGAACGACAGGAATAATGTGATTCAACAGCGCCAGGTTCCTAGCCCAATGGTTAGATGTGAATGGATTAATGATTACCTGTTAGAATTCTTGAAGGCCAATCCGAAAAGCATGTCTCCTTCTCAAACAATGGAGGACGTTGGAAATATAATCTCTAAGGGAGAAAATTTGATTATGCACACAGATGCATCTGTCATGGGAGGGCAAAGTCCATGCAGTATTGGGATTGTGATGTGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAATGCATTTTCCAAGGCGAATTCATCTCCTTTGGAAGCGGAAGCAATTGCGGTGCTTGAAGCGATGCGTTTGGCTACATTGTTAAATATAAAGAGGCTGACTGTCTTGTCTGATTCATTGACTGTAATAAATTCAACAAACGAGAAGATACAGGTGGAGTCTTCTATTGTGACGTCGTTGTGGGACATTAAAGAAATTCAGAAGCTATTTGACTGTATAACTTTCCATTTTACGAGTCGTAGATTTAATGGCTTTGCTCATAGCGTGGCTCGAATAGGTTTATCTACATCATCACAATTGTGGTTAGGAGACTATCCTGAGTGGATGGTAGGATTGTCGCTCAAGGAGCGATGTTTATTTGTATCCCCCGGAGATTCTATTATGTGTTGA

mRNA sequence

ATGGTTGCTTTGCTTGATATCAAAGACAAGTGGTTAAGCTTGGCAGACAATTCGATGGAAGCATTAGAGAGGATTTGTGTGGGAGCGTGGTCAATTTGGAACGACAGGAATAATGTGATTCAACAGCGCCAGGTTCCTAGCCCAATGGTTAGATGTGAATGGATTAATGATTACCTGTTAGAATTCTTGAAGGCCAATCCGAAAAGCATGTCTCCTTCTCAAACAATGGAGGACGTTGGAAATATAATCTCTAAGGGAGAAAATTTGATTATGCACACAGATGCATCTGTCATGGGAGGGCAAAGTCCATGCAGTATTGGGATTGTGATGTGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAATGCATTTTCCAAGGCGAATTCATCTCCTTTGGAAGCGGAAGCAATTGCGGTGCTTGAAGCGATGCGTTTGGCTACATTGTTAAATATAAAGAGGCTGACTGTCTTGTCTGATTCATTGACTGTAATAAATTCAACAAACGAGAAGATACAGGTGGAGTCTTCTATTGTGACGTCGTTGTGGGACATTAAAGAAATTCAGAAGCTATTTGACTGTATAACTTTCCATTTTACGAGTCGTAGATTTAATGGCTTTGCTCATAGCGTGGCTCGAATAGGTTTATCTACATCATCACAATTGTGGTTAGGAGACTATCCTGAGTGGATGGTAGGATTGTCGCTCAAGGAGCGATGTTTATTTGTATCCCCCGGAGATTCTATTATGTGTTGA

Coding sequence (CDS)

ATGGTTGCTTTGCTTGATATCAAAGACAAGTGGTTAAGCTTGGCAGACAATTCGATGGAAGCATTAGAGAGGATTTGTGTGGGAGCGTGGTCAATTTGGAACGACAGGAATAATGTGATTCAACAGCGCCAGGTTCCTAGCCCAATGGTTAGATGTGAATGGATTAATGATTACCTGTTAGAATTCTTGAAGGCCAATCCGAAAAGCATGTCTCCTTCTCAAACAATGGAGGACGTTGGAAATATAATCTCTAAGGGAGAAAATTTGATTATGCACACAGATGCATCTGTCATGGGAGGGCAAAGTCCATGCAGTATTGGGATTGTGATGTGTGATAAACAAGGGAATTTAAAGGCGGTGCAGAATGCATTTTCCAAGGCGAATTCATCTCCTTTGGAAGCGGAAGCAATTGCGGTGCTTGAAGCGATGCGTTTGGCTACATTGTTAAATATAAAGAGGCTGACTGTCTTGTCTGATTCATTGACTGTAATAAATTCAACAAACGAGAAGATACAGGTGGAGTCTTCTATTGTGACGTCGTTGTGGGACATTAAAGAAATTCAGAAGCTATTTGACTGTATAACTTTCCATTTTACGAGTCGTAGATTTAATGGCTTTGCTCATAGCGTGGCTCGAATAGGTTTATCTACATCATCACAATTGTGGTTAGGAGACTATCCTGAGTGGATGGTAGGATTGTCGCTCAAGGAGCGATGTTTATTTGTATCCCCCGGAGATTCTATTATGTGTTGA

Protein sequence

MVALLDIKDKWLSLADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPKSMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKANSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQKLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWLGDYPEWMVGLSLKERCLFVSPGDSIMC

Homology

[Close]

BLAST of Lcy04g010080 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-16
Identity = 67/231 (29.00%), Postives = 111/231 (48.05%), Query Frame = 0


Query: 11   WLSLADN-SMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPKS 70
            W SL +    + L    +  W IWNDRN++I  +QV     +CEW+  +L    +A   +
Sbjct: 1219 WSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN 1278

Query: 71   MSPSQTMEDVGNII-----SKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAF 130
             SP +T  +   ++     S   +L ++TDA+  G  +  S G ++ D   +L A  +  
Sbjct: 1279 YSP-RTQSNHRPVVQYWRPSSSVSLKLNTDAACRGAST--SFGCIIRDSSCSLVAATSIR 1338

Query: 131  SKANSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDI 190
                 SPL AE   +LE ++ A   N   L V SDSL  I     +I         + +I
Sbjct: 1339 VPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEI 1398

Query: 191  KEIQKLFDCITFHFTSRRFNGFAHSVARIGLSTSS--QLWLGDYPEWMVGL 234
            + +   F  I+F  +SR+ N  AH +A+ G+++ S    WL ++P W++ L
Sbjct: 1399 QALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDL 1446

[Close]

BLAST of Lcy04g010080 vs. ExPASy TrEMBL
Match: A0A7J8L9V7 (RNase H domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_020157 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 58/215 (26.98%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 11  WLS--LADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPK 70
           WL+   +  + E     C G W IW +RN ++ + +  +     + I  Y+LE   +  +
Sbjct: 53  WLTWVFSKGTNEQCRSFCCGLWLIWTNRNKLLYENRSNTSWDISKQIQSYILELEGSRER 112

Query: 71  SMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKAN 130
            +    +         +G+N I+  DA+     S  + G+V+C+++G + A ++   +  
Sbjct: 113 ELIEGNSARSRQG-SQRGKNAILF-DAAFDLKNSRSASGLVVCNEEGKIVAAKSTLHEDI 172

Query: 131 SSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQ 190
           +SP  AEA+A L+A RL   L    + ++ DS TVI     + + +S I   + DI+ ++
Sbjct: 173 ASPFAAEAVAGLQAARLGIQLGFHTVDIIGDSRTVITKCQIRSRDKSEIGAIISDIQSLK 232

Query: 191 KLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWL 224
             +  I FHF  R  N  AHS+AR  L    + +L
Sbjct: 233 DQYRRIKFHFIPRSENKEAHSLARETLKKGREQYL 265

[Close]

BLAST of Lcy04g010080 vs. ExPASy TrEMBL
Match: A0A7J9IIF5 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_018472 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-12
Identity = 57/198 (28.79%), Postives = 100/198 (50.51%), Query Frame = 0


Query: 26  CVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPKSMSPSQTMEDVGNIISK 85
           C   W IWN RN ++ +R+  S  +  + I  Y+ E L+   K      T     +   +
Sbjct: 187 CCALWVIWNSRNQLVHERKHLSGRILAQRIESYIAE-LEGVGKEKHTWGTDRLQKHSEEE 246

Query: 86  GENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKANSSPLEAEAIAVLEAMRL 145
            E+ I+  DA+    +S  + G++  +++G +K ++       SSP  AEA+A L+A++L
Sbjct: 247 PEDTILF-DAAFEANRSRSASGVIARNRRGEMKVLKTTLHSNVSSPFFAEALACLQAVKL 306

Query: 146 ATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQKLFDCITFHFTSRRFNG 205
              L ++ +T+  DS TVI       + +SSI   + DIK    LF  ++F F  +  N 
Sbjct: 307 GVSLGLRSVTIRGDSKTVIKKCQSAERDKSSIGAVINDIKNHSLLFHEVSFQFIQKSENY 366

Query: 206 FAHSVARIGLSTSSQLWL 224
            AH +A+  L+T ++ +L
Sbjct: 367 QAHEIAKETLATENERYL 382

[Close]

BLAST of Lcy04g010080 vs. ExPASy TrEMBL
Match: A0A5B6UEY6 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_003382 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-12
Identity = 60/231 (25.97%), Postives = 114/231 (49.35%), Query Frame = 0


Query: 10   KWL--SLADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANP 69
            +WL  S+A  S+++    CV  W+IW DRN  I +++  +     +++ +Y+ E   A P
Sbjct: 874  QWLTSSIALLSLDSCRFFCVALWAIWGDRNARIHEKRSRTGKEIADFVRNYVKEINGAKP 933

Query: 70   KSMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKA 129
            K +  S+ ++   +     + + ++ D +    +   + G+V+ D +G++ A ++   + 
Sbjct: 934  KVVKSSKNVKRWQH--PPYQTMKINFDGAFDTKEHLSTPGVVVRDNEGSVLASKSRLHEK 993

Query: 130  NSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEI 189
             +S   AEA+A  EA+RL   +  + + +  DSLTVI          S I + ++ I ++
Sbjct: 994  VASAFAAEALACREAVRLGIDMQNEDVIIEGDSLTVIKKCRNVSPDRSLIGSYIFYIHQM 1053

Query: 190  QKLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWLGDYPEWMVGLSLKER 239
            Q  F  I F F SR  N  AH++A   L    + +L    +W V +  + R
Sbjct: 1054 QSFFKAIRFEFISRSENTLAHTIATESLKNKEEFYL----DWGVPIYAEAR 1098

[Close]

BLAST of Lcy04g010080 vs. ExPASy TrEMBL
Match: A0A1U8P7A7 (uncharacterized protein LOC107955819 OS=Gossypium hirsutum OX=3635 GN=LOC107955819 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-11
Identity = 56/225 (24.89%), Postives = 106/225 (47.11%), Query Frame = 0


Query: 3   ALLDIKD--KWLSLADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLL 62
           A+ D+ D   W+    NS +  +  C  AW IW+ RN ++ + +  +     + ++ Y++
Sbjct: 74  AITDLWDWPTWVFTIGNS-QLCQLFCCAAWMIWSSRNQLVHEGKTTTRQELSKLVHSYIV 133

Query: 63  EFLKANPKSMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAV 122
           E      +  +    +    N  ++     ++ DA+     S  + G+++  +     A+
Sbjct: 134 EIDGMEERPSTLGDNIRQRQN--TRSTTATIYVDAAFDNKYSRSASGMMVRGEMDEFLAL 193

Query: 123 QNAFSKANSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTS 182
           ++    A SSP  AEA A L+A++L   L  + +T++ DS TVI   N     +S+I   
Sbjct: 194 KSVLHSAISSPFMAEAYAGLQAVKLGISLGFQSITIIGDSKTVIKKCNSTTIDKSAIGAV 253

Query: 183 LWDIKEIQKLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWLGD 226
           + DI+  ++ F    F F  R  N  AH +A+  L T  +++L D
Sbjct: 254 IRDIQRKKQFFQESHFQFIHRSENRQAHELAKDALRTGEEIYLED 295

[Close]

BLAST of Lcy04g010080 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 67/231 (29.00%), Postives = 111/231 (48.05%), Query Frame = 0


Query: 11   WLSLADN-SMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPKS 70
            W SL +    + L    +  W IWNDRN++I  +QV     +CEW+  +L    +A   +
Sbjct: 1219 WSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSN 1278

Query: 71   MSPSQTMEDVGNII-----SKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAF 130
             SP +T  +   ++     S   +L ++TDA+  G  +  S G ++ D   +L A  +  
Sbjct: 1279 YSP-RTQSNHRPVVQYWRPSSSVSLKLNTDAACRGAST--SFGCIIRDSSCSLVAATSIR 1338

Query: 131  SKANSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDI 190
                 SPL AE   +LE ++ A   N   L V SDSL  I     +I         + +I
Sbjct: 1339 VPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEI 1398

Query: 191  KEIQKLFDCITFHFTSRRFNGFAHSVARIGLSTSS--QLWLGDYPEWMVGL 234
            + +   F  I+F  +SR+ N  AH +A+ G+++ S    WL ++P W++ L
Sbjct: 1399 QALTCCFAFISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDL 1446

[Close]

BLAST of Lcy04g010080 vs. NCBI nr
Match: XP_040948611.1 (uncharacterized protein LOC121217116 [Gossypium hirsutum])

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-13
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 0


Query: 11  WLS--LADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPK 70
           WL+   +  + E     C G WSIW +RN ++ + +  +     + I  Y+LE L+ + +
Sbjct: 52  WLTWVFSQGTNEQCRNFCCGLWSIWTNRNKLLYENRSNASWDISKQIQSYILE-LEGSRE 111

Query: 71  SMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKAN 130
            +    T         +G+N I   DA+     S  + G+V+C+++G + A ++   +  
Sbjct: 112 RVLIEGTSARSRQSSQRGKNAIFF-DAAFDLKNSRSASGLVVCNEEGKIVAAKSTLHEDI 171

Query: 131 SSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQ 190
           +SP  AEA+A L+A RL   L    L ++ DS TVI       + +S I   + DI+ ++
Sbjct: 172 ASPFTAEAVAGLQAARLGIQLGFHTLDIIGDSRTVITKCQNTSRDKSKIGAIISDIQSLK 231

Query: 191 KLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWL 224
             +  I F+F  R  N  AHS+AR  L    + +L
Sbjct: 232 DQYRRIRFYFIPRSENKEAHSLARETLKKGGEQYL 264

[Close]

BLAST of Lcy04g010080 vs. NCBI nr
Match: MBA0549102.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-12
Identity = 58/215 (26.98%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 11  WLS--LADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPK 70
           WL+   +  + E     C G W IW +RN ++ + +  +     + I  Y+LE   +  +
Sbjct: 53  WLTWVFSKGTNEQCRSFCCGLWLIWTNRNKLLYENRSNTSWDISKQIQSYILELEGSRER 112

Query: 71  SMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKAN 130
            +    +         +G+N I+  DA+     S  + G+V+C+++G + A ++   +  
Sbjct: 113 ELIEGNSARSRQG-SQRGKNAILF-DAAFDLKNSRSASGLVVCNEEGKIVAAKSTLHEDI 172

Query: 131 SSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQ 190
           +SP  AEA+A L+A RL   L    + ++ DS TVI     + + +S I   + DI+ ++
Sbjct: 173 ASPFAAEAVAGLQAARLGIQLGFHTVDIIGDSRTVITKCQIRSRDKSEIGAIISDIQSLK 232

Query: 191 KLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWL 224
             +  I FHF  R  N  AHS+AR  L    + +L
Sbjct: 233 DQYRRIKFHFIPRSENKEAHSLARETLKKGREQYL 265

[Close]

BLAST of Lcy04g010080 vs. NCBI nr
Match: MBA0821628.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-12
Identity = 57/198 (28.79%), Postives = 100/198 (50.51%), Query Frame = 0


Query: 26  CVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANPKSMSPSQTMEDVGNIISK 85
           C   W IWN RN ++ +R+  S  +  + I  Y+ E L+   K      T     +   +
Sbjct: 187 CCALWVIWNSRNQLVHERKHLSGRILAQRIESYIAE-LEGVGKEKHTWGTDRLQKHSEEE 246

Query: 86  GENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKANSSPLEAEAIAVLEAMRL 145
            E+ I+  DA+    +S  + G++  +++G +K ++       SSP  AEA+A L+A++L
Sbjct: 247 PEDTILF-DAAFEANRSRSASGVIARNRRGEMKVLKTTLHSNVSSPFFAEALACLQAVKL 306

Query: 146 ATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQKLFDCITFHFTSRRFNG 205
              L ++ +T+  DS TVI       + +SSI   + DIK    LF  ++F F  +  N 
Sbjct: 307 GVSLGLRSVTIRGDSKTVIKKCQSAERDKSSIGAVINDIKNHSLLFHEVSFQFIQKSENY 366

Query: 206 FAHSVARIGLSTSSQLWL 224
            AH +A+  L+T ++ +L
Sbjct: 367 QAHEIAKETLATENERYL 382

[Close]

BLAST of Lcy04g010080 vs. NCBI nr
Match: KAA3456600.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-11
Identity = 60/231 (25.97%), Postives = 114/231 (49.35%), Query Frame = 0


Query: 10   KWL--SLADNSMEALERICVGAWSIWNDRNNVIQQRQVPSPMVRCEWINDYLLEFLKANP 69
            +WL  S+A  S+++    CV  W+IW DRN  I +++  +     +++ +Y+ E   A P
Sbjct: 874  QWLTSSIALLSLDSCRFFCVALWAIWGDRNARIHEKRSRTGKEIADFVRNYVKEINGAKP 933

Query: 70   KSMSPSQTMEDVGNIISKGENLIMHTDASVMGGQSPCSIGIVMCDKQGNLKAVQNAFSKA 129
            K +  S+ ++   +     + + ++ D +    +   + G+V+ D +G++ A ++   + 
Sbjct: 934  KVVKSSKNVKRWQH--PPYQTMKINFDGAFDTKEHLSTPGVVVRDNEGSVLASKSRLHEK 993

Query: 130  NSSPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEI 189
             +S   AEA+A  EA+RL   +  + + +  DSLTVI          S I + ++ I ++
Sbjct: 994  VASAFAAEALACREAVRLGIDMQNEDVIIEGDSLTVIKKCRNVSPDRSLIGSYIFYIHQM 1053

Query: 190  QKLFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWLGDYPEWMVGLSLKER 239
            Q  F  I F F SR  N  AH++A   L    + +L    +W V +  + R
Sbjct: 1054 QSFFKAIRFEFISRSENTLAHTIATESLKNKEEFYL----DWGVPIYAEAR 1098

[Close]

BLAST of Lcy04g010080 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.8e-05
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 130 SPLEAEAIAVLEAMRLATLLNIKRLTVLSDSLTVINSTNEKIQVESSIVTSLWDIKEIQK 189
           SPL AEA A+  AM  A  L    L VLSDS +++++ N  + + + I   L +I+ I+ 
Sbjct: 203 SPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSL-NEIFGLLVEIRSIRN 262

Query: 190 LFDCITFHFTSRRFNGFAHSVARIGLSTSSQLWL 224
            F  I+F F  R  N  A + A++ L  S  + L
Sbjct: 263 RFRSISFQFIPRLVNSIADAAAKLSLCISGNIGL 295

The following BLAST results are available for this feature:

BLAST of Lcy04g010080 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g010080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	7.4e-16	29.00	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A7J8L9V7	1.7e-12	26.98	RNase H domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_020157 ...	[more]
A0A7J9IIF5	2.2e-12	28.79	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_018472 PE=4 S...	[more]
A0A5B6UEY6	5.0e-12	25.97	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_003382 PE=4 SV=1	[more]
A0A1U8P7A7	1.9e-11	24.89	uncharacterized protein LOC107955819 OS=Gossypium hirsutum OX=3635 GN=LOC1079558...	[more]

BLAST of Lcy04g010080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	1.5e-15	29.00	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_040948611.1	7.1e-13	28.37	uncharacterized protein LOC121217116 [Gossypium hirsutum]	[more]
MBA0549102.1	3.5e-12	26.98	hypothetical protein [Gossypium lobatum]	[more]
MBA0821628.1	4.6e-12	28.79	hypothetical protein [Gossypium armourianum]	[more]
KAA3456600.1	1.0e-11	25.97	reverse transcriptase [Gossypium australe]	[more]

BLAST of Lcy04g010080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10000.1	5.8e-05	35.11	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 93..212 e-value: 3.1E-19 score: 69.0
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 117..216 score: 9.685842
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 88..220 e-value: 1.5E-16 score: 62.5
None	No IPR available	PANTHER	PTHR47074:SF30	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 68..211
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 68..211
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 93..212 e-value: 6.23195E-20 score: 80.436
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 89..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g010080.1	Lcy04g010080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity