Lcy04g009130 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g009130
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionjosephin-like protein
LocationChr04: 40330200 .. 40330961 (-)
RNA-Seq ExpressionLcy04g009130
SyntenyLcy04g009130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAAAGAGAGAGAGATCTTGGTCAGAGACAGCTAACATAAAGTTAGCTACATGAAGAAAAAAAGAAAAAAACCAAACATATGTGTTTTTGAGAAAGTCCTAAACTCCACATTTGGTTTACTCTACACTCAATCAAACCAAACCCTGAAAACTTCTACCCTCTTGTTTTTCTTTGTTTGTCTGATCAAAACCCAAAATTGATCTTGAATTCTCCAACAAAAAAGGAACAAAAATGTCGAAATTAAGCTCAAGCAGAAGGGTGAGTTTCAGCTCAGATCAGCCCACACCTCTCCAAAGAAACAAGAAAAGGGTCATCACTGTATTCTGGGTTTTCCGGCTGCCGAAACCCGGCAGGTTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGCGTCAAAGTCGCCAAAGTTCTCCGCTATGTCTCTTTCAGAAAGAGATCTTCGTCTTCGAAGAATAATAACAACGCAGTCTCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTTCTTCAGCTGTTTGATTTTTATTTTTCTTTTCCAGTCATGTTCTGTAACTGTTAATTAAGGTAATTTCTTGGTTCTTACTTTGTTTCATAATGTTTTTTTTTTCCTTTTTTTCTCTCGAAAAATTGGTTAAATTGTGGTTGTATTAGTTCTCGAACTTTTAGGAGTACGTTTGTTTACCATAAAAAAAAT

mRNA sequence

ATTGAAAGAGAGAGAGATCTTGGTCAGAGACAGCTAACATAAAGTTAGCTACATGAAGAAAAAAAGAAAAAAACCAAACATATGTGTTTTTGAGAAAGTCCTAAACTCCACATTTGGTTTACTCTACACTCAATCAAACCAAACCCTGAAAACTTCTACCCTCTTGTTTTTCTTTGTTTGTCTGATCAAAACCCAAAATTGATCTTGAATTCTCCAACAAAAAAGGAACAAAAATGTCGAAATTAAGCTCAAGCAGAAGGGTGAGTTTCAGCTCAGATCAGCCCACACCTCTCCAAAGAAACAAGAAAAGGGTCATCACTGTATTCTGGGTTTTCCGGCTGCCGAAACCCGGCAGGTTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGCGTCAAAGTCGCCAAAGTTCTCCGCTATGTCTCTTTCAGAAAGAGATCTTCGTCTTCGAAGAATAATAACAACGCAGTCTCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTTCTTCAGCTGTTTGATTTTTATTTTTCTTTTCCAGTCATGTTCTGTAACTGTTAATTAAGGTAATTTCTTGGTTCTTACTTTGTTTCATAATGTTTTTTTTTTCCTTTTTTTCTCTCGAAAAATTGGTTAAATTGTGGTTGTATTAGTTCTCGAACTTTTAGGAGTACGTTTGTTTACCATAAAAAAAAT

Coding sequence (CDS)

ATGTCGAAATTAAGCTCAAGCAGAAGGGTGAGTTTCAGCTCAGATCAGCCCACACCTCTCCAAAGAAACAAGAAAAGGGTCATCACTGTATTCTGGGTTTTCCGGCTGCCGAAACCCGGCAGGTTCTCGCCGGAAAGTTTCCTCCGCCGCCTCGGCGTCAAAGTCGCCAAAGTTCTCCGCTATGTCTCTTTCAGAAAGAGATCTTCGTCTTCGAAGAATAATAACAACGCAGTCTCTGGTTCTAATTTCAACAGATCCCATTCGGTTTCGGACTCCATGGAAGAATCTCACAGAGCTGAAGCTGTTAAAGATTGCATCCAGTTCTTCAACTCTTCTTCTTCTTCAGCTGTTTGA

Protein sequence

MSKLSSSRRVSFSSDQPTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGVKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSSSSSAV
Homology
BLAST of Lcy04g009130 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 89/126 (70.63%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQ----------PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRL 61
           +KLSSSRRVSFSSDQ          P    RN+KR+ITVFWVFRLPK GR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GVKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNS 118
           G KV KVLRYVS RKRS+S  ++++  SGSNFNRSHSVS+SMEESHRAEAVKDCI FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

BLAST of Lcy04g009130 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.3e-33
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQ--------PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGV 61
           +KLSSSRRVSFSSDQ        P    RN+KR+ITVFWVF+LPK GR  P SFLRR+G 
Sbjct: 3   TKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGA 62

Query: 62  KVAKVLRYVSFRKRS---SSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFN 116
           KV KVLRYVS RKRS   +S  ++++  SGSNFNRSHSVS+SMEESHRAEAVKDCI FFN
Sbjct: 63  KVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFN 122

BLAST of Lcy04g009130 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.9e-33
Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQPTPLQ-RNKKRVITVFWVFRLPKPGRFSPESFLRRLGVKVAKVLR 61
           +KLSS RRVSFSSDQ    + R +KR I VFWVFRLPK  RFSPE FLRRLG K+AKVLR
Sbjct: 3   TKLSSGRRVSFSSDQAAAAKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAKVLR 62

Query: 62  YVSFRKRSSSSKNNN---NAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSSSSSA 117
           YVS RKRS+SS N++   N    S FNRSHSVSDSMEESHRAEAVKDCIQFFNSS+SS+
Sbjct: 63  YVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNSSS 121

BLAST of Lcy04g009130 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 0

Query: 6   SSRRVSFSSD---QPTPLQR----------NKKRVITVFWVFRLPKPGRFSPESFLRRLG 65
           +S+RVSFS D   +PT L +          N++RV+   + FRL +  RFSP   LRRLG
Sbjct: 5   TSKRVSFSPDVNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRRLG 64

Query: 66  VKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSS 115
            KVA+ LR+VS R+ S+S K ++   S SN  RS S+++S+ +SHRAEA++DCI+F NSS
Sbjct: 65  AKVARALRFVSMRRNSNSHKVSS---SSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSS 122

BLAST of Lcy04g009130 vs. ExPASy TrEMBL
Match: A0A6A2XKB5 (Sulfoquinovosyldiacylglycerol 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117056pilonHSYRG01249 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.2e-14
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 0

Query: 6   SSRRVSFS---SDQPTPLQR-----------NKKRVITVFWVFRLPKPGRFSPESFLRRL 65
           +S+RVSFS    ++PT   +           NK+RV+ +F  FR+ +  RFSP +FLR +
Sbjct: 5   TSKRVSFSPHIGERPTMFLKHGGSSSTTTRGNKRRVVGIF-TFRVVESSRFSPATFLRHV 64

Query: 66  GVKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNS 115
           G KVA  LR+VS R  SSS K     VSGS  +RS S+++S+ ESHRAEA++DCI+F NS
Sbjct: 65  GAKVAGALRFVSIRGNSSSRK-----VSGSKLSRSRSLTESV-ESHRAEAIEDCIEFLNS 120

BLAST of Lcy04g009130 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36
Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0

Query: 1   MSKLSSSRRVSFSSDQ----PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGVKVA 60
           MSK+ SSR VS  SD+    PT LQRN+KRVITV WVFRLPK GRFSPESFLRR+G KVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTTLQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSSSSSA 118
           KV+RYVS +KRS  SK    A + +NFNRSHSVSDSMEESHRAEAVKDCI FFNSSSSSA
Sbjct: 61  KVVRYVSLKKRSECSK---KASAATNFNRSHSVSDSMEESHRAEAVKDCIHFFNSSSSSA 118

BLAST of Lcy04g009130 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 89/126 (70.63%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQ----------PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRL 61
           +KLSSSRRVSFSSDQ          P    RN+KR+ITVFWVFRLPK GR  P SFLRR+
Sbjct: 3   TKLSSSRRVSFSSDQGAAAATSAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRI 62

Query: 62  GVKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNS 118
           G KV KVLRYVS RKRS+S  ++++  SGSNFNRSHSVS+SMEESHRAEAVKDCI FFNS
Sbjct: 63  GAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFNS 122

BLAST of Lcy04g009130 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 92/131 (70.23%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQ---------PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLG 61
           +KLSSSRRVSFSSDQ         P    RN+KR+ITVFWVFRLPK GR  P SFLRR+G
Sbjct: 3   TKLSSSRRVSFSSDQGAAAASAAKPAAFPRNRKRLITVFWVFRLPKSGRLFPGSFLRRIG 62

Query: 62  VKVAKVLRYVSFRKRS------SSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCI 118
            KV KVLRYVS RKRS      SSS ++++  SGSNFNRSHSVS+SMEESHRAEAVKDCI
Sbjct: 63  AKVVKVLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCI 122

BLAST of Lcy04g009130 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 7.6e-34
Identity = 88/120 (73.33%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MSKLSSSRRVSFSSDQ----PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGVKVA 60
           MSK+ SSR VS  SD+    PT LQRN+KRVITV WVFRLPK GRFSPESFLRR+G KVA
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVA 60

Query: 61  KVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSSSSSA 117
           KVLR VS +KRS  SK    A + +NFNRSHSVSDSMEESHRAEAV+DCI FFNSSSSS+
Sbjct: 61  KVLRAVSLKKRSECSK---KASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSSS 117

BLAST of Lcy04g009130 vs. NCBI nr
Match: XP_022977351.1 (uncharacterized protein LOC111477703 [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 0

Query: 2   SKLSSSRRVSFSSDQ--------PTPLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGV 61
           +KLSSSRRVSFSSDQ        P    RN+KR+ITVFWVF+LPK GR  P SFLRR+G 
Sbjct: 3   TKLSSSRRVSFSSDQGAAAAAAKPAAFPRNRKRLITVFWVFQLPKSGRLFPGSFLRRIGA 62

Query: 62  KVAKVLRYVSFRKRS---SSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFN 116
           KV KVLRYVS RKRS   +S  ++++  SGSNFNRSHSVS+SMEESHRAEAVKDCI FFN
Sbjct: 63  KVVKVLRYVSLRKRSASPASCSSSSSLKSGSNFNRSHSVSESMEESHRAEAVKDCINFFN 122

BLAST of Lcy04g009130 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-06
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 41  RFSP--ESFLRRLGVKVAKVLRYVSFRKRSSS----------SKNNNNAVSGSNFNRSHS 100
           R SP     ++R+G + AK LR++SFR+ ++           S +++++ S     RS S
Sbjct: 50  RSSPAARKLIQRIGARFAKTLRFISFRRNTTDRRKTSSFLLPSSSSSSSSSAIYMKRSKS 109

Query: 101 VSDSMEESHRAEAVKDCIQFFNSS 113
           V+++  ESHRAEA++DCI+F NSS
Sbjct: 110 VNET--ESHRAEAIEDCIEFLNSS 131

BLAST of Lcy04g009130 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0

Query: 35  RLPKPGRFSPESFLRRLGVKVAKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSME 94
           RLP+    +    ++ LG K AK LR V  RK+  S  +  ++ SG +      +     
Sbjct: 44  RLPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKRSPPSKVSSFSGRS---QPPIIPINN 103

Query: 95  ESHRAEAVKDCIQFFNSSSS 115
           +SHR+EA++DCIQF NSSSS
Sbjct: 104 DSHRSEAIEDCIQFINSSSS 120

BLAST of Lcy04g009130 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 6   SSRRVSFSSDQ--------PT--PLQRNKKRVITVFWVFRLPKPGRFSPESFLRRLGVKV 65
           +S+RV FS D         PT    +  ++RV+   + F        + +  LR +G +V
Sbjct: 5   ASKRVRFSPDPEANDELIFPTHSSSRHGRRRVVVGIFSFSF-SDSPATTKRLLRSIGDRV 64

Query: 66  AKVLRYVSFRKRSSSSKNNNNAVSGSNFNRSHSVSDSMEESHRAEAVKDCIQFFNSSSS 115
            K  RY+SF + ++ +  ++++   S+     S S +  ESHRAEA++DCI+F NS SS
Sbjct: 65  GKTFRYISFGRMNTKTTPSSSSNVSSSLYLMKSKSLNGSESHRAEAIEDCIEFLNSCSS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GFL96.7e-3670.63josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1[more]
A0A6J1IJN35.3e-3368.80uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703... [more]
A0A0A0L2K76.9e-3373.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1[more]
A0A061EQH23.2e-1447.54Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1[more]
A0A6A2XKB57.2e-1447.97Sulfoquinovosyldiacylglycerol 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117... [more]
Match NameE-valueIdentityDescription
XP_023518083.18.1e-3675.21uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo][more]
XP_022950374.11.4e-3570.63josephin-like protein [Cucurbita moschata][more]
KAG6603596.16.9e-3570.23hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595400.17.6e-3473.33hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977351.11.1e-3268.80uncharacterized protein LOC111477703 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G09032.14.2e-0638.10unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G07300.17.2e-0638.75josephin protein-related [more]
AT5G01225.17.2e-0631.93unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..89
NoneNo IPR availablePANTHERPTHR34355:SF1JOSEPHIN-LIKE PROTEINcoord: 6..115
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g009130.1Lcy04g009130.1mRNA