Lcy04g009060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g009060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr04: 40268115 .. 40270605 (-)
RNA-Seq Expression	Lcy04g009060
Synteny	Lcy04g009060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCACACACTCACCCTTCCCCCCCTCTCAACTCGCCGCGAAATTCTCGCCGTCGTAATGGCCGCCACCTCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCGCCGACGTGCGGCCGAGTTCCGGGCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAGAGCCCGGCGAAGAAATCGCCGTCGTCGAAGCAGATATCAGACCGGCCGCTGTGGTTCCCCGGAGCGAAGGCGCCGGAATGGCTGGACGGAAGCCTGGTCGGCGACTACGGGTTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTACGATCTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGAGATTCGAGAGCTCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACTGGCGTCACTTGGCAAGACGCCGGAAAGGTGAGTTTTATTTTTTATTTTTCTTTTCATCCATTTTTAGTTTCTTTATTATGATTTTGGTAAATTACATCTTGCATTATTATATTAATTTAGCATTTTATATATGAGGATGATATAAAATAAATAGATAAATAGTTTTTTTTTTCTTTTCCAACAAAATGTATTTTGATACTAATGATCAAGGTTAAAGCATTCTATAGTATTATTATATTAATTTAGCATAGGTCAATTGATACAATGTTTGTACCAATGATCAAAAGATATCATCTCTCAATTCTACATGTTGTCAAAAATAAAAAGTAAAAACAAAATGAATATTATTCACAAATAGGTAAATATATTGGTGGAATGTTTCTTTTTCCAATTAGTCTATATTATTTAGAAAAGTTTTTGCTTACCTCATATATTTTCAATTGTACTATTTTCACCATGGGTGAATGTTGAAATTGGGTATGGTACTTAGTAAATTAATAAAATTTTAGAGTAGGAATTGGAATTAGTCTCTCTTCAATTATATTTAGTTAGTTCATATTTATGAGAAATTTTATTAAATATATATATTGAAATTTAAACGCATGCATTATTTAGATTTCATTGAGTATGCATGTATCGTAATAATTTAGGTATGGTTAATGTATTTTGGTTAAATTATCAAAAATACCCTTGAACTATGGAGTTGTTTTCAATAATACCCTCGAACTTTCAAATTTCAAGAGCTAAAATGAAATTTTTGTTAGTTCAGGGGTATAATTGATAATTTAACCATGTATTTATTAATTTGTATATATGTATGGTATTAAAATTATTTTCTCTTTCTTTGTTTAAGGACATTTTTTAATAAAAAAAAATTTTATGTTTCTTGATATATATATTATTGGATAAACACACAATTTTCTTATTGGTTGTCTAAGAACTTCAATAAAGTGGCAAGTTATCATGACATTTTGAATGGTATATTTTCTGCAACATGTGAAATACATGGATTTTCAATTTTGCAGATCAGCTTGTATGACTCATAAAAATTAAAATAAGAGTAATTTAAACTCAATTAACAATATTTCAATTTTAAAAGAAAAAAAGAAGAGGAAAAACAATGAATCTTAACTTCTTCCTTCTTAATCATCTTGAATTTAAACATAGTTACACCAATCTCTTTTCCCACTTATCCTTGTATTATTTCCCTATCATTAATCTCTGCCTTTTAAAGAAAAAATTACAACTAACCCACATTAAAATTTCCATTATTCATCCAAAGAATTATCATTGATGAACCAAAATTGTGAAAACAAAAATGCAGGTAGAATTAGTGGAAGGTTCATCCTACCTTGGGCAGCCCCTTCCCTTCTCCATCACCACATTGATCTGGATCGAAGTTCTCGTGATCGGATACATCGAGTTTCAAAGGAACTCCGAGCTCGACCCCGAGAAGAGATTGTATCCTGGAGGCAAGTATTTTGACCCCTTGGGCTTGGCCGAGGATCCCGAAAAGAAAGCCATCCTACAATTGGCTGAGATCAAGCATGCTCGCCTTGCCATGGTTGCCTTCCTTGGCTTCGCTGTTCAAGCTGCTGTCACTGGCAAAGGCCCGCTCAACAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCCTCTTCTTAAGCTCCTCGAATTTACGTGTTGATGTGTTCTCTAGTTTGTAAAAACTTGACCGAGTAATATGATGAGTTGTAAGTACTTTCATTCGAAATCCGTATGTCAAATTATATATTAATAACGCCTATGACAAAGAAAATGTTATTAATTTATTTTTTGAAACTATAGGTAATAATGATGGATCTATATTAGGTGGTTTTAATTTTAAAAAATTATTTGAAAATCAAATATCATGATGTATAATTGCAATAATATCTTATCAACAAAAAAAAATTAGAAAAG

mRNA sequence

CATCACACACTCACCCTTCCCCCCCTCTCAACTCGCCGCGAAATTCTCGCCGTCGTAATGGCCGCCACCTCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCGCCGACGTGCGGCCGAGTTCCGGGCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAGAGCCCGGCGAAGAAATCGCCGTCGTCGAAGCAGATATCAGACCGGCCGCTGTGGTTCCCCGGAGCGAAGGCGCCGGAATGGCTGGACGGAAGCCTGGTCGGCGACTACGGGTTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTACGATCTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGAGATTCGAGAGCTCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACTGGCGTCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCATCCTACCTTGGGCAGCCCCTTCCCTTCTCCATCACCACATTGATCTGGATCGAAGTTCTCGTGATCGGATACATCGAGTTTCAAAGGAACTCCGAGCTCGACCCCGAGAAGAGATTGTATCCTGGAGGCAAGTATTTTGACCCCTTGGGCTTGGCCGAGGATCCCGAAAAGAAAGCCATCCTACAATTGGCTGAGATCAAGCATGCTCGCCTTGCCATGGTTGCCTTCCTTGGCTTCGCTGTTCAAGCTGCTGTCACTGGCAAAGGCCCGCTCAACAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCCTCTTCTTAAGCTCCTCGAATTTACGTGTTGATGTGTTCTCTAGTTTGTAAAAACTTGACCGAGTAATATGATGAGTTGTAAGTACTTTCATTCGAAATCCGTATGTCAAATTATATATTAATAACGCCTATGACAAAGAAAATGTTATTAATTTATTTTTTGAAACTATAGGTAATAATGATGGATCTATATTAGGTGGTTTTAATTTTAAAAAATTATTTGAAAATCAAATATCATGATGTATAATTGCAATAATATCTTATCAACAAAAAAAAATTAGAAAAG

Coding sequence (CDS)

ATGGCCGCCACCTCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCGCCGACGTGCGGCCGAGTTCCGGGCGAGTCCAAGCCCGATTCTCATTCGGCAAAAAGAAGAGCCCGGCGAAGAAATCGCCGTCGTCGAAGCAGATATCAGACCGGCCGCTGTGGTTCCCCGGAGCGAAGGCGCCGGAATGGCTGGACGGAAGCCTGGTCGGCGACTACGGGTTCGATCCGTTCGGGTTGGGGAAACCGGCGGAGTATTTGCAGTACGATCTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGAGATTCGAGAGCTCGGAAGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTTGGATTGCAGAGATTCCGTGAGTGCGAGCTCATCCATGGAAGGTGGGCCATGTTGGCCACACTCGGTGCTCTCTCTGTTGAATGGCTCACTGGCGTCACTTGGCAAGACGCCGGAAAGGTAGAATTAGTGGAAGGTTCATCCTACCTTGGGCAGCCCCTTCCCTTCTCCATCACCACATTGATCTGGATCGAAGTTCTCGTGATCGGATACATCGAGTTTCAAAGGAACTCCGAGCTCGACCCCGAGAAGAGATTGTATCCTGGAGGCAAGTATTTTGACCCCTTGGGCTTGGCCGAGGATCCCGAAAAGAAAGCCATCCTACAATTGGCTGAGATCAAGCATGCTCGCCTTGCCATGGTTGCCTTCCTTGGCTTCGCTGTTCAAGCTGCTGTCACTGGCAAAGGCCCGCTCAACAACTGGGCAACCCATCTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCCTCTTCTTAA

Protein sequence

MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS

Homology

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BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 1.2e-136
Identity = 240/290 (82.76%), Postives = 261/290 (90.00%), Query Frame = 0


Query: 1   MAATS---AATSSFIGTRLA-DVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFP 60
           MAATS   AA SS +GTR+A  + P SGR  A F FGKKK+  KKS      +DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 61  GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVK 120
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E+++ K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 121 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYL 180
           STPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYL
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 181 GQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQL 240
           GQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGK+FDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 241 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

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BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 1.6e-133
Identity = 238/289 (82.35%), Postives = 261/289 (90.31%), Query Frame = 0


Query: 1   MAATS--AATSSFIGTR-LADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPG 60
           MAATS  AA SS +GTR ++D+  +S R  ARF FG KK+  KK+ +   ISDRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKS 120
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLG 180

Query: 181 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGK+FDPLGLA DP KKA LQLA
Sbjct: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           EIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287

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BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.7e-114
Identity = 208/270 (77.04%), Postives = 228/270 (84.44%), Query Frame = 0


Query: 4   TSAATSSFIGTRLADVRPSSGRVQAR--FSFGKKK--SPAKKSPSSKQISDRPLWFPGAK 63
           T+AA S   G R+ D RP +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 64  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTP 123
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ESSE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 124 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQP 183
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 184 LPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEI 243
           LPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG YFDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 244 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 270
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

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BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0


Query: 53  LWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIG-TRFE 112
           LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G +    +  
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 111

Query: 113 SSEVKS-TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV 172
             EV S     PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W +AGKVEL 
Sbjct: 112 PDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL- 171

Query: 173 EGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEK 232
           +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA + E+
Sbjct: 172 DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEE 231

Query: 233 KAI-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA 269
           +A  L+ AEIKHARLAMV+F G+ VQA  TG+G L + A
Sbjct: 232 RAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

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BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.9e-38
Identity = 106/280 (37.86%), Postives = 146/280 (52.14%), Query Frame = 0


Query: 7   ATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPEWLDG 66
           A++S +   +A V PS     ++  F     P   + +  +I     W PG   P +LDG
Sbjct: 2   ASNSLMSCGIAAVYPSL-LSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 61

Query: 67  SLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQPYTE 126
           S  GD+GFDP GLG+ PA                                          
Sbjct: 62  SAPGDFGFDPLGLGEVPA------------------------------------------ 121

Query: 127 VFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG--SSYLGQPLPF- 186
              L+R++E ELIH RWAMLA  G L  E L    W  A +   + G  ++YLG P+P+ 
Sbjct: 122 --NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWG 181

Query: 187 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 246
           ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG ++DP+K   L++ EIK+ 
Sbjct: 182 TLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNG 235

Query: 247 RLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 282
           RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 242 RLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

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BLAST of Lcy04g009060 vs. ExPASy TrEMBL
Match: A0A6J1HPL7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466190 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 4.2e-156
Identity = 274/286 (95.80%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKA 60
           MAATSAATSSFIGTRLADVR SSGRVQARFSFGKKKSPAKKSPSSKQI DRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 60

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPF 120
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE+SEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELVEGSSYLGQPL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 181 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIK 240
           PFS+T LIWIEVLVIGYIEFQRN+EL+PEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Lcy04g009060 vs. ExPASy TrEMBL
Match: A0A6J1EVQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438232 PE=3 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 2.1e-155
Identity = 273/286 (95.45%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKA 60
           MAATSAATSSFIGTRLADVR SSGRVQARFSFGKKKSPAKK PSSKQI DRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKLPSSKQIPDRPLWFPGAKA 60

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPF 120
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE+SEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELVEGSSYLGQPL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 181 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIK 240
           PFS+T LIWIEVLVIGYIEFQRN+EL+PEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Lcy04g009060 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.9e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSFIGTRLA++ PSSGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           S+TTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. ExPASy TrEMBL
Match: A0A0A0KXI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G308550 PE=3 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.9e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSF+GTRLA++ PSSGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           SITTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 3.9e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSFIGTRLA++ PSSGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           S+TTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. NCBI nr
Match: XP_022966541.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >XP_023517083.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7027389.1 Chlorophyll a-b binding protein CP29.2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 560.5 bits (1443), Expect = 8.6e-156
Identity = 274/286 (95.80%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKA 60
           MAATSAATSSFIGTRLADVR SSGRVQARFSFGKKKSPAKKSPSSKQI DRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKSPSSKQIPDRPLWFPGAKA 60

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPF 120
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE+SEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELVEGSSYLGQPL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 181 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIK 240
           PFS+T LIWIEVLVIGYIEFQRN+EL+PEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Lcy04g009060 vs. NCBI nr
Match: XP_022931964.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 558.1 bits (1437), Expect = 4.3e-155
Identity = 273/286 (95.45%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MAATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKA 60
           MAATSAATSSFIGTRLADVR SSGRVQARFSFGKKKSPAKK PSSKQI DRPLWFPGAKA
Sbjct: 1   MAATSAATSSFIGTRLADVRSSSGRVQARFSFGKKKSPAKKLPSSKQIPDRPLWFPGAKA 60

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPF 120
           PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD+IGTRFE+SEVKSTPF
Sbjct: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDLIGTRFENSEVKSTPF 120

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPYTEVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVELVEGSSYLGQPL
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPL 180

Query: 181 PFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIK 240
           PFS+T LIWIEVLVIGYIEFQRN+EL+PEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIK
Sbjct: 181 PFSLTALIWIEVLVIGYIEFQRNAELEPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSSS
Sbjct: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSSS 286

[Close]

BLAST of Lcy04g009060 vs. NCBI nr
Match: XP_004147887.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN54365.1 hypothetical protein Csa_017948 [Cucumis sativus])

HSP 1 Score: 553.9 bits (1426), Expect = 8.1e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSF+GTRLA++ PSSGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           SITTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. NCBI nr
Match: XP_008449241.1 (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo] >KAA0045037.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa] >TYJ96289.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa])

HSP 1 Score: 553.9 bits (1426), Expect = 8.1e-154
Identity = 270/283 (95.41%), Postives = 278/283 (98.23%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSFIGTRLA++ PSSGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           S+TTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKKA+LQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 553.9 bits (1426), Expect = 8.1e-154
Identity = 270/283 (95.41%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 3   ATSAATSSFIGTRLADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPGAKAPE 62
           AT+AATSSFIGTRLA++RP SGRVQARF FGKKKSP KKSPSSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAELRPCSGRVQARFGFGKKKSPPKKSPSSKTISDRPLWFPGAKAPE 61

Query: 63  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTPFQP 122
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFES+EVKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 123 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 182
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 183 SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEIKHA 242
           SITTLIWIEVLVIGYIEFQRN+ELDPEKRLYPGGK+FDPLGLAEDPEKK +LQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKHA 241

Query: 243 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSS 286
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of Lcy04g009060 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 487.3 bits (1253), Expect = 8.6e-138
Identity = 240/290 (82.76%), Postives = 261/290 (90.00%), Query Frame = 0


Query: 1   MAATS---AATSSFIGTRLA-DVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFP 60
           MAATS   AA SS +GTR+A  + P SGR  A F FGKKK+  KKS      +DRPLW+P
Sbjct: 1   MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60

Query: 61  GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVK 120
           GA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E+++ K
Sbjct: 61  GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120

Query: 121 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYL 180
           STPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYL
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 181 GQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQL 240
           GQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGK+FDPLGLA DPEK A LQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240

Query: 241 AEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           AEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

[Close]

BLAST of Lcy04g009060 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-134
Identity = 238/289 (82.35%), Postives = 261/289 (90.31%), Query Frame = 0


Query: 1   MAATS--AATSSFIGTR-LADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPG 60
           MAATS  AA SS +GTR ++D+  +S R  ARF FG KK+  KK+ +   ISDRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKS 120
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLG
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLG 180

Query: 181 QPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLA 240
           QPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGK+FDPLGLA DP KKA LQLA
Sbjct: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLA 240

Query: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 287
           EIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 241 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287

[Close]

BLAST of Lcy04g009060 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-115
Identity = 208/270 (77.04%), Postives = 228/270 (84.44%), Query Frame = 0


Query: 4   TSAATSSFIGTRLADVRPSSGRVQAR--FSFGKKK--SPAKKSPSSKQISDRPLWFPGAK 63
           T+AA S   G R+ D RP +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 64  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTP 123
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ESSE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 124 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQP 183
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 184 LPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLAEDPEKKAILQLAEI 243
           LPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG YFDPLGLA DPEK   L+LAEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 244 KHARLAMVAFLGFAVQAAVTGKGPLNNWAT 270
           KH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of Lcy04g009060 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-69
Identity = 134/185 (72.43%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MAATS--AATSSFIGTR-LADVRPSSGRVQARFSFGKKKSPAKKSPSSKQISDRPLWFPG 60
           MAATS  AA SS +GTR ++D+  +S R  ARF FG KK+  KK+ +   ISDRPLWFPG
Sbjct: 1   MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKT--VISDRPLWFPG 60

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKS 120
           AK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E+ + KS
Sbjct: 61  AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKS 120

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKV  +  SS L 
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLR 180

Query: 181 QPLPF 183
             L F
Sbjct: 181 LCLAF 183

[Close]

BLAST of Lcy04g009060 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-66
Identity = 124/169 (73.37%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 4   TSAATSSFIGTRLADVRPSSGRVQAR--FSFGKKK--SPAKKSPSSKQISDRPLWFPGAK 63
           T+AA S   G R+ D RP +GRVQAR  FSFGKKK   P KKS   +   DR +WFPGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 64  APEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESSEVKSTP 123
            PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   ESSE+K TP
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 124 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVE 169
           FQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVE
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of Lcy04g009060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	1.2e-136	82.76	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	1.6e-133	82.35	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	1.7e-114	77.04	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	1.1e-65	60.27	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	9.9e-38	37.86	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Lcy04g009060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HPL7	4.2e-156	95.80	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EVQ5	2.1e-155	95.45	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3BBB3	3.9e-154	95.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KXI3	3.9e-154	95.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3BMH8	3.9e-154	95.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Lcy04g009060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966541.1	8.6e-156	95.80	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima] >X...	[more]
XP_022931964.1	4.3e-155	95.45	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita moschata]	[more]
XP_004147887.1	8.1e-154	95.41	chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN5436...	[more]
XP_008449241.1	8.1e-154	95.41	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis m...	[more]
XP_038882769.1	8.1e-154	95.41	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Lcy04g009060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	8.6e-138	82.76	light harvesting complex photosystem II	[more]
AT3G08940.2	1.2e-134	82.35	light harvesting complex photosystem II	[more]
AT2G40100.1	1.2e-115	77.04	light harvesting complex photosystem II	[more]
AT3G08940.1	1.3e-69	72.43	light harvesting complex photosystem II	[more]
AT2G40100.2	1.4e-66	73.37	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 54..286 e-value: 1.2E-69 score: 236.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 60..256 e-value: 6.0E-51 score: 173.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..51
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 1..286
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..284
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g009060.1	Lcy04g009060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding