Lcy04g008650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g008650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr04: 39675484 .. 39677216 (+)
RNA-Seq Expression	Lcy04g008650
Synteny	Lcy04g008650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCTCCCTTTTATTTTCCGTAATTTATTGCTGTATGATTTCGTATGCGCTTTCCTTTGTTGGGTTAATTCATTCTTTCGTTTTTATGACATTTGGGGCTTTTATGATGTCGGTTACGTAGAATCATCCGGCTTCTCATATTCAATTCTTTTTCCTTAATTGACACCCAGATGTTTCATTTTTCAATTGTTCATTCGTTTGTCGTGGCAAGATGCTTTCAATTAGATTCTGGAGTCGCAATTTGATTCAATGACCTAGGGTAGAGAAATTGTATTGGATAGTTTTGGACCTTTCTTCTGGGATTATCGTGTTGCTTCGTTGAATTACTCGGATTTCCATCTTAGCTGGTGAAACTAGCGCGCCAATTTTCCCAATTCTGTTCAGGAATGTGGATTCGATACACCTCTTCGTCATGAGTACAAGCTTTATGCTAGTTGAGCTACCCTAACTTATAAGGGTTTCCACCCTATTGCTTTGCTATACACTATTTGAACGTCTAGGTTAGCTCACAACCCTCGTCCTTATCAGACGGATAATTGTGTCTTACAAGTTGTTATTTGGACAACGTGTAAGTTACAATGGTGGTCTCTTTTTCAGAAGAAGCTGCTGAATGGGCTGAATGGGCTGAATTGAGTTTCATCTTATACAGCATCCATCTAACCAATATGGAAGATTATTGGGTGTGGCCTTATGAAAAGGGGGGATTATTCTCAACAAAATCATTGCTCAATAGCTTGGTTTCGGTGAAAAAAGACAAACCTTGCCTCTATACAGAGGCCATATGGACTGGTGCCTACCCAAAAAGGATTAAATTCTTCATTTGGGAATTTTCCCACTCAGCTTTAAACACTATAGACAGACTCCAAAGGAAATTCCCTAACATGGCTCTATCCCCAAACAGGTGTATTCTCTGCAAATCCGATATGGAGACTCAATCTCATATTTTCATTTGTTGTCTGGTAGCTCAAAATTTTTGGAACGAGTTGAGATTAGCTTTTAATTGGGAGATCGCTCTTCCAAAAGATCCAGTAATCCACTCATGCTTTTATCATCTCTACTTTTGGGTCATCCATTTAAACGCACAAAGGAGCTTCTTTGGCAGAATATGATTCAGACATTGGTATGGTCGATTTGGATGGAAAGAAACCATCGAACTTTTGAATCTAAGGAAAAGCCATATCCGGTTCTTTTTGACAATGTTCTTTTCCATGCATTATCTTAGTGTAAATTGAATTCTCTCTTTTCCTCTTATAGTTTAATATCACTTTTGACCAATTGGAGATGTTTATTGTAACTCCATTTGTTCGGTGCTTTCTCCTCCCCTTTTTTTTGTAATTTCATATAGCAATGAAATTGTTTCTTATCCCAAAAAAAAAAAAAAAAAAGCATAAGCCTCCCGCATTTTTTGAACATAATATTACATGGCTTGCAACTCTCATGCTTGAGTTTCTTTGGAGACACTGAGTTTTTGGATGTAATGTCAAATTCCAATTTGTATCAAGGAATTTTTTTTTTAATGTTGGTATAACTACATGGAAAATTTCTCTGGAGTGAGTAATGTGACAAGTGATAGTGTTATTAGCCTTTTGTTGAAGATATATTCCGTTTAATTAAAACTATTCGGTGCGTCTTTCTTCCATGGTTCTAGAAAGATCTAGTTCCATACCATATTACGTACTATATGGTCAGTATATCATGGGTTCAATGTCAGTTCCTCCGTCCAAGAAAAG

mRNA sequence

CTTTTTCTCCCTTTTATTTTCCGTAATTTATTGCTGTATGATTTCGTATGCGCTTTCCTTTGTTGGGTTAATTCATTCTTTCGTTTTTATGACATTTGGGGCTTTTATGATGTCGGTTACGTAGAATCATCCGGCTTCTCATATTCAATTCTTTTTCCTTAATTGACACCCAGATGTTTCATTTTTCAATTGTTCATTCGTTTGTCGTGGCAAGATGCTTTCAATTAGATTCTGGAGTCGCAATTTGATTCAATGACCTAGGGTAGAGAAATTGTATTGGATAGTTTTGGACCTTTCTTCTGGGATTATCGTGTTGCTTCGTTGAATTACTCGGATTTCCATCTTAGCTGGTGAAACTAGCGCGCCAATTTTCCCAATTCTGTTCAGGAATGTGGATTCGATACACCTCTTCGTCATGAGTACAAGCTTTATGCTAGTTGAGCTACCCTAACTTATAAGGGTTTCCACCCTATTGCTTTGCTATACACTATTTGAACGTCTAGGTTAGCTCACAACCCTCGTCCTTATCAGACGGATAATTGTGTCTTACAAGTTGTTATTTGGACAACGTGTAAGTTACAATGGTGGTCTCTTTTTCAGAAGAAGCTGCTGAATGGGCTGAATGGGCTGAATTGAGTTTCATCTTATACAGCATCCATCTAACCAATATGGAAGATTATTGGGTGTGGCCTTATGAAAAGGGGGGATTATTCTCAACAAAATCATTGCTCAATAGCTTGGTTTCGGTGAAAAAAGACAAACCTTGCCTCTATACAGAGGCCATATGGACTGGTGCCTACCCAAAAAGGATTAAATTCTTCATTTGGGAATTTTCCCACTCAGCTTTAAACACTATAGACAGACTCCAAAGGAAATTCCCTAACATGGCTCTATCCCCAAACAGGTGTATTCTCTGCAAATCCGATATGGAGACTCAATCTCATATTTTCATTTGTTGTCTGGTAGCTCAAAATTTTTGGAACGAGTTGAGATTAGCTTTTAATTGGGAGATCGCTCTTCCAAAAGATCCAGTAATCCACTCATGCTTTTATCATCTCTACTTTTGGGTCATCCATTTAAACGCACAAAGGAGCTTCTTTGGCAGAATATGATTCAGACATTGGTATGGTCGATTTGGATGGAAAGAAACCATCGAACTTTTGAATCTAAGGAAAAGCCATATCCGGTTCTTTTTGACAATGTTCTTTTCCATGCATTATCTTAGTGTAAATTGAATTCTCTCTTTTCCTCTTATAGTTTAATATCACTTTTGACCAATTGGAGATGTTTATTGTAACTCCATTTGTTCGGTGCTTTCTCCTCCCCTTTTTTTTGTAATTTCATATAGCAATGAAATTGTTTCTTATCCCAAAAAAAAAAAAAAAAAAGCATAAGCCTCCCGCATTTTTTGAACATAATATTACATGGCTTGCAACTCTCATGCTTGAGTTTCTTTGGAGACACTGAGTTTTTGGATGTAATGTCAAATTCCAATTTGTATCAAGGAATTTTTTTTTTAATGTTGGTATAACTACATGGAAAATTTCTCTGGAGTGAGTAATGTGACAAGTGATAGTGTTATTAGCCTTTTGTTGAAGATATATTCCGTTTAATTAAAACTATTCGGTGCGTCTTTCTTCCATGGTTCTAGAAAGATCTAGTTCCATACCATATTACGTACTATATGGTCAGTATATCATGGGTTCAATGTCAGTTCCTCCGTCCAAGAAAAG

Coding sequence (CDS)

ATGGTGGTCTCTTTTTCAGAAGAAGCTGCTGAATGGGCTGAATGGGCTGAATTGAGTTTCATCTTATACAGCATCCATCTAACCAATATGGAAGATTATTGGGTGTGGCCTTATGAAAAGGGGGGATTATTCTCAACAAAATCATTGCTCAATAGCTTGGTTTCGGTGAAAAAAGACAAACCTTGCCTCTATACAGAGGCCATATGGACTGGTGCCTACCCAAAAAGGATTAAATTCTTCATTTGGGAATTTTCCCACTCAGCTTTAAACACTATAGACAGACTCCAAAGGAAATTCCCTAACATGGCTCTATCCCCAAACAGGTGTATTCTCTGCAAATCCGATATGGAGACTCAATCTCATATTTTCATTTGTTGTCTGGTAGCTCAAAATTTTTGGAACGAGTTGAGATTAGCTTTTAATTGGGAGATCGCTCTTCCAAAAGATCCAGTAATCCACTCATGCTTTTATCATCTCTACTTTTGGGTCATCCATTTAAACGCACAAAGGAGCTTCTTTGGCAGAATATGA

Protein sequence

MVVSFSEEAAEWAEWAELSFILYSIHLTNMEDYWVWPYEKGGLFSTKSLLNSLVSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALNTIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNWEIALPKDPVIHSCFYHLYFWVIHLNAQRSFFGRI

Homology

[Close]

BLAST of Lcy04g008650 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 35   VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
            +W      +F T S+  ++    +S     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 943  LWNLNSNNIFDTASVKRAIAEAPISPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 1002

Query: 95   TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
            T DRLQ++ PN  LSPN C +C    E  +H+FI C  +Q  W++ +   NW
Sbjct: 1003 TADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1053

[Close]

BLAST of Lcy04g008650 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L    VS     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 286 LWKLNSNNIFDTASVKKILSEAPVSPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 345

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
           T DRLQ++ PN ALSPN C +C    E  +H+FI C  +Q  W++ +    W
Sbjct: 346 TADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKW 396

[Close]

BLAST of Lcy04g008650 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L    VS     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 243 LWKLNSNNIFDTASVKKILSEAPVSPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 302

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
           T DRLQ++ PN ALSPN C +C    E  +H+FI C  +Q  W++ +    W
Sbjct: 303 TADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKW 353

[Close]

BLAST of Lcy04g008650 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-15
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L     S     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 835 LWKLNSNNIFDTASIKKDLSEASASPTNFHPSLY-KTLWKVDFPKKCKFFIWTLIHGCIN 894

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNWEIALPKD 150
           T DRLQ++ PN  LSPN C +C    E  +H+FI C  +Q  W++ +    W  + P D
Sbjct: 895 TADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPND 951

[Close]

BLAST of Lcy04g008650 vs. ExPASy TrEMBL
Match: A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-15
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 15  WAELSFILYSIHLTNMEDYWVWPYEKGGLFSTKSLLNSLVSVKKDKPCLYTE----AIWT 74
           WAEL   L +    N  D   W     G +S  S+  +L+   +    L  +     +W 
Sbjct: 662 WAELKNSLNASFCENGRDSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWK 721

Query: 75  GAYPKRIKFFIWEFSHSALNTIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQ 134
            + PK+ KFFIW   + ++NT D+L ++ PN+   P+ C++CK + E + H+FI C +A+
Sbjct: 722 SSIPKKCKFFIWTLLYDSVNTADQLTKRMPNLCSRPSWCVMCKRNEEDRIHLFILCPIAK 781

Query: 135 NFWNEL--RLAFNWEIALPKDPVIHSC 156
           + WN +   L  N     PKD  I  C
Sbjct: 782 SIWNLISSHLKSNVNCLSPKDLCITMC 808

[Close]

BLAST of Lcy04g008650 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-15
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 35   VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
            +W      +F T S+  ++    +S     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 943  LWNLNSNNIFDTASVKRAIAEAPISPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 1002

Query: 95   TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
            T DRLQ++ PN  LSPN C +C    E  +H+FI C  +Q  W++ +   NW
Sbjct: 1003 TADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNW 1053

[Close]

BLAST of Lcy04g008650 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-15
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L    VS     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 286 LWKLNSNNIFDTASVKKILSEAPVSPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 345

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
           T DRLQ++ PN ALSPN C +C    E  +H+FI C  +Q  W++ +    W
Sbjct: 346 TADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKW 396

[Close]

BLAST of Lcy04g008650 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-15
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L    VS     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 243 LWKLNSNNIFDTASVKKILSEAPVSPANFHPNLY-KTLWKVEFPKKCKFFIWTLIHGCIN 302

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNW 143
           T DRLQ++ PN ALSPN C +C    E  +H+FI C  +Q  W++ +    W
Sbjct: 303 TADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKW 353

[Close]

BLAST of Lcy04g008650 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-15
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L     S     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 741 LWKLNSNNIFDTASIKKDLSEASASPTNFHPSLY-KTLWKVDFPKKCKFFIWTLIHGCIN 800

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNWEIALPKD 150
           T DRLQ++ PN  LSPN C +C    E  +H+FI C  +Q  W++ +    W  + P D
Sbjct: 801 TADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPND 857

[Close]

BLAST of Lcy04g008650 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-15
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 35  VWPYEKGGLFSTKSLLNSL----VSVKKDKPCLYTEAIWTGAYPKRIKFFIWEFSHSALN 94
           +W      +F T S+   L     S     P LY + +W   +PK+ KFFIW   H  +N
Sbjct: 835 LWKLNSNNIFDTASIKKDLSEASASPTNFHPSLY-KTLWKVDFPKKCKFFIWTLIHGCIN 894

Query: 95  TIDRLQRKFPNMALSPNRCILCKSDMETQSHIFICCLVAQNFWNELRLAFNWEIALPKD 150
           T DRLQ++ PN  LSPN C +C    E  +H+FI C  +Q  W++ +    W  + P D
Sbjct: 895 TADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPND 951

The following BLAST results are available for this feature:

BLAST of Lcy04g008650 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g008650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I7	2.6e-15	35.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	3.4e-15	37.50	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	3.4e-15	37.50	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	4.4e-15	35.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CJ08	4.4e-15	31.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy04g008650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039950.1	5.3e-15	35.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044451.1	7.0e-15	37.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	7.0e-15	37.50	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	9.1e-15	35.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	9.1e-15	35.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g008650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 44..133 e-value: 1.1E-14 score: 54.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g008650.1	Lcy04g008650.1	mRNA